data_4WA5 # _model_server_result.job_id jCgEcOA1Pa7B57kZbWzQHw _model_server_result.datetime_utc '2024-12-01 06:40:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wa5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4WA5 # _exptl.entry_id 4WA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.31 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ZANAMIVIR _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WA5 _cell.length_a 90.452 _cell.length_b 90.452 _cell.length_c 108.979 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_685 -x+1,-y+3,z -1 0 0 0 -1 0 0 0 1 90.452 271.356 0 3 'crystal symmetry operation' 3_765 -y+2,x+1,z 0 -1 0 1 0 0 0 0 1 180.904 90.452 0 4 'crystal symmetry operation' 4_475 y-1,-x+2,z 0 1 0 -1 0 0 0 0 1 -90.452 180.904 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B FUC 2 B 2 FUC B 1 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 90 1_555 A SG CYS 337 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 42 A CYS 122 1_555 A SG CYS 47 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf3 A SG CYS 102 A CYS 182 1_555 A SG CYS 149 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 A SG CYS 151 A CYS 231 1_555 A SG CYS 156 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 A SG CYS 197 A CYS 277 1_555 A SG CYS 210 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 199 A CYS 279 1_555 A SG CYS 208 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf7 A SG CYS 236 A CYS 316 1_555 A SG CYS 255 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 A SG CYS 341 A CYS 421 1_555 A SG CYS 366 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 64 A ASN 144 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A O ASP 212 A ASP 292 1_555 D CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc2 A O GLY 216 A GLY 296 1_555 D CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 A OD2 ASP 242 A ASP 322 1_555 D CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc4 A O TYR 264 A TYR 344 1_555 D CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C12 H20 N4 O7' _chem_comp.formula_weight 332.31 _chem_comp.id ZMR _chem_comp.mon_nstd_flag . _chem_comp.name ZANAMIVIR _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '4-GUANIDINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID;4-guanidino-Neu5Ac2en;MODIFIED SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A ZMR doub 429 n n C1 O1B ZMR sing 430 n n C1 C2 ZMR sing 431 n n C2 C3 ZMR doub 432 n n C2 O6 ZMR sing 433 n n C3 C4 ZMR sing 434 n n C3 H3 ZMR sing 435 n n C4 C5 ZMR sing 436 n n C4 NE ZMR sing 437 n n C4 H4 ZMR sing 438 n n C5 N5 ZMR sing 439 n n C5 C6 ZMR sing 440 n n C5 H5 ZMR sing 441 n n N5 C10 ZMR sing 442 n n N5 HN5 ZMR sing 443 n n C10 O10 ZMR doub 444 n n C10 C11 ZMR sing 445 n n C11 H111 ZMR sing 446 n n C11 H112 ZMR sing 447 n n C11 H113 ZMR sing 448 n n C6 O6 ZMR sing 449 n n C6 C7 ZMR sing 450 n n C6 H6 ZMR sing 451 n n C7 O7 ZMR sing 452 n n C7 C8 ZMR sing 453 n n C7 H7 ZMR sing 454 n n O7 HO7 ZMR sing 455 n n C8 O8 ZMR sing 456 n n C8 C9 ZMR sing 457 n n C8 H8 ZMR sing 458 n n O8 HO8 ZMR sing 459 n n C9 O9 ZMR sing 460 n n C9 H91 ZMR sing 461 n n C9 H92 ZMR sing 462 n n O9 HO9 ZMR sing 463 n n NE CZ ZMR sing 464 n n CZ NH1 ZMR doub 465 n n CZ NH2 ZMR sing 466 n n NH1 HNH1 ZMR sing 467 n n NH2 HN21 ZMR sing 468 n n NH2 HN22 ZMR sing 469 n n O1B HO1B ZMR sing 470 n n NE HNE ZMR sing 471 n n # _atom_sites.entry_id 4WA5 _atom_sites.fract_transf_matrix[1][1] 0.011056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZMR A 1 501 469 ZMR ZMR . D 4 CA A 1 504 1 CA CA . E 5 HOH A 1 601 32 HOH HOH . E 5 HOH A 2 602 1 HOH HOH . E 5 HOH A 3 603 9 HOH HOH . E 5 HOH A 4 604 5 HOH HOH . E 5 HOH A 5 605 29 HOH HOH . E 5 HOH A 6 606 15 HOH HOH . E 5 HOH A 7 607 28 HOH HOH . E 5 HOH A 8 608 4 HOH HOH . E 5 HOH A 9 609 21 HOH HOH . E 5 HOH A 10 610 13 HOH HOH . E 5 HOH A 11 611 39 HOH HOH . E 5 HOH A 12 612 2 HOH HOH . E 5 HOH A 13 613 3 HOH HOH . E 5 HOH A 14 614 6 HOH HOH . E 5 HOH A 15 615 7 HOH HOH . E 5 HOH A 16 616 8 HOH HOH . E 5 HOH A 17 617 10 HOH HOH . E 5 HOH A 18 618 11 HOH HOH . E 5 HOH A 19 619 12 HOH HOH . E 5 HOH A 20 620 14 HOH HOH . E 5 HOH A 21 621 16 HOH HOH . E 5 HOH A 22 622 17 HOH HOH . E 5 HOH A 23 623 18 HOH HOH . E 5 HOH A 24 624 19 HOH HOH . E 5 HOH A 25 625 20 HOH HOH . E 5 HOH A 26 626 22 HOH HOH . E 5 HOH A 27 627 23 HOH HOH . E 5 HOH A 28 628 24 HOH HOH . E 5 HOH A 29 629 25 HOH HOH . E 5 HOH A 30 630 26 HOH HOH . E 5 HOH A 31 631 27 HOH HOH . E 5 HOH A 32 632 30 HOH HOH . E 5 HOH A 33 633 31 HOH HOH . E 5 HOH A 34 634 33 HOH HOH . E 5 HOH A 35 635 34 HOH HOH . E 5 HOH A 36 636 35 HOH HOH . E 5 HOH A 37 637 36 HOH HOH . E 5 HOH A 38 638 37 HOH HOH . E 5 HOH A 39 639 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZMR . . . C 3 23.079 114.538 133.385 1 15.36 ? C1 ZMR 501 A 1 HETATM 2 O O1A ZMR . . . C 3 24.196 114.672 133.897 1 15.32 ? O1A ZMR 501 A 1 HETATM 3 O O1B ZMR . . . C 3 22.506 113.457 133.429 1 15.15 ? O1B ZMR 501 A 1 HETATM 4 C C2 ZMR . . . C 3 22.4 115.579 132.65 1 16.3 ? C2 ZMR 501 A 1 HETATM 5 C C3 ZMR . . . C 3 23.048 116.687 132.215 1 16.59 ? C3 ZMR 501 A 1 HETATM 6 C C4 ZMR . . . C 3 22.427 117.655 131.24 1 15.73 ? C4 ZMR 501 A 1 HETATM 7 C C5 ZMR . . . C 3 20.906 117.467 131.343 1 16.59 ? C5 ZMR 501 A 1 HETATM 8 N N5 ZMR . . . C 3 20.154 118.231 130.362 1 15.43 ? N5 ZMR 501 A 1 HETATM 9 C C10 ZMR . . . C 3 19.393 119.294 130.664 1 15.18 ? C10 ZMR 501 A 1 HETATM 10 O O10 ZMR . . . C 3 19.338 119.793 131.754 1 13.63 ? O10 ZMR 501 A 1 HETATM 11 C C11 ZMR . . . C 3 18.678 119.897 129.477 1 15.59 ? C11 ZMR 501 A 1 HETATM 12 C C6 ZMR . . . C 3 20.389 116.018 131.319 1 17.04 ? C6 ZMR 501 A 1 HETATM 13 O O6 ZMR . . . C 3 21.001 115.267 132.334 1 17.53 ? O6 ZMR 501 A 1 HETATM 14 C C7 ZMR . . . C 3 18.929 115.785 131.679 1 18.21 ? C7 ZMR 501 A 1 HETATM 15 O O7 ZMR . . . C 3 18.779 115.913 133.089 1 19.35 ? O7 ZMR 501 A 1 HETATM 16 C C8 ZMR . . . C 3 18.374 114.396 131.331 1 18.35 ? C8 ZMR 501 A 1 HETATM 17 O O8 ZMR . . . C 3 18.873 114.014 130.02 1 18.53 ? O8 ZMR 501 A 1 HETATM 18 C C9 ZMR . . . C 3 16.827 114.391 131.407 1 18.41 ? C9 ZMR 501 A 1 HETATM 19 O O9 ZMR . . . C 3 16.24 114.967 130.203 1 19.92 ? O9 ZMR 501 A 1 HETATM 20 N NE ZMR . . . C 3 22.608 119.073 131.622 1 16.12 ? NE ZMR 501 A 1 HETATM 21 C CZ ZMR . . . C 3 22.663 120.008 130.714 1 15 ? CZ ZMR 501 A 1 HETATM 22 N NH1 ZMR . . . C 3 22.56 119.722 129.377 1 14.64 ? NH1 ZMR 501 A 1 HETATM 23 N NH2 ZMR . . . C 3 22.809 121.255 131.065 1 13.91 ? NH2 ZMR 501 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #