data_4WAB # _model_server_result.job_id 6T8eNHBp4Zt7WkpNV0FXhg _model_server_result.datetime_utc '2024-11-28 16:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4WAB # _exptl.entry_id 4WAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.475 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WAB _cell.length_a 86.72 _cell.length_b 86.72 _cell.length_c 180.36 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 43.36 75.101723 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -43.36 75.101723 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 Cl2 F3 N5 O4' _chem_comp.formula_weight 618.475 _chem_comp.id LVJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C22 LVJ doub 230 n n C22 C23 LVJ sing 231 n n C22 N4 LVJ sing 232 n n C23 C26 LVJ sing 233 n n C23 C25 LVJ sing 234 n n C23 C24 LVJ sing 235 n n N4 C21 LVJ sing 236 n n C21 C19 LVJ sing 237 n n C19 C18 LVJ sing 238 n y C19 C20 LVJ doub 239 n y C18 C17 LVJ doub 240 n y C17 C16 LVJ sing 241 n y C16 CL LVJ sing 242 n n C16 C15 LVJ doub 243 n y C20 CL1 LVJ sing 244 n n C20 C15 LVJ sing 245 n y C15 N3 LVJ sing 246 n n N3 C1 LVJ sing 247 n n C1 N1 LVJ doub 248 n y C1 N LVJ sing 249 n y N1 C2 LVJ sing 250 n y C2 C11 LVJ sing 251 n y C2 C3 LVJ doub 252 n y C11 N LVJ sing 253 n y C11 C10 LVJ doub 254 n y N C LVJ sing 255 n n C10 C5 LVJ sing 256 n y C5 O LVJ sing 257 n n C5 C4 LVJ doub 258 n y O C6 LVJ sing 259 n n C6 C7 LVJ sing 260 n n C7 O1 LVJ sing 261 n n C7 C9 LVJ sing 262 n n C7 C8 LVJ sing 263 n n C4 C3 LVJ sing 264 n y C4 C12 LVJ sing 265 n n C12 O2 LVJ doub 266 n n C12 N2 LVJ sing 267 n n N2 C13 LVJ sing 268 n n C14 F LVJ sing 269 n n C14 F1 LVJ sing 270 n n C14 F2 LVJ sing 271 n n N4 H4 LVJ sing 272 n n C26 H261 LVJ sing 273 n n C26 H262 LVJ sing 274 n n C26 H263 LVJ sing 275 n n C25 H251 LVJ sing 276 n n C25 H252 LVJ sing 277 n n C25 H253 LVJ sing 278 n n C24 H241 LVJ sing 279 n n C24 H242 LVJ sing 280 n n C24 H243 LVJ sing 281 n n C21 H211 LVJ sing 282 n n C21 H212 LVJ sing 283 n n C18 H18 LVJ sing 284 n n C17 H17 LVJ sing 285 n n N3 H3 LVJ sing 286 n n C3 HA LVJ sing 287 n n C10 H10 LVJ sing 288 n n C HC1 LVJ sing 289 n n C HC2 LVJ sing 290 n n C HC3 LVJ sing 291 n n C6 H61C LVJ sing 292 n n C6 H62C LVJ sing 293 n n O1 H1 LVJ sing 294 n n C9 H91C LVJ sing 295 n n C9 H92C LVJ sing 296 n n C9 H93C LVJ sing 297 n n C8 H81C LVJ sing 298 n n C8 H82C LVJ sing 299 n n C8 H83C LVJ sing 300 n n N2 H2 LVJ sing 301 n n C13 H131 LVJ sing 302 n n C13 H132 LVJ sing 303 n n C13 C14 LVJ sing 304 n n # _atom_sites.entry_id 4WAB _atom_sites.fract_transf_matrix[1][1] 0.011531 _atom_sites.fract_transf_matrix[1][2] 0.006658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 201 1172 GSH GSH . C 3 LVJ A 1 202 1173 LVJ LVJ . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 18 HOH HOH . D 4 HOH A 3 303 4 HOH HOH . D 4 HOH A 4 304 11 HOH HOH . D 4 HOH A 5 305 7 HOH HOH . D 4 HOH A 6 306 12 HOH HOH . D 4 HOH A 7 307 2 HOH HOH . D 4 HOH A 8 308 3 HOH HOH . D 4 HOH A 9 309 6 HOH HOH . D 4 HOH A 10 310 9 HOH HOH . D 4 HOH A 11 311 10 HOH HOH . D 4 HOH A 12 312 14 HOH HOH . D 4 HOH A 13 313 16 HOH HOH . D 4 HOH A 14 314 21 HOH HOH . D 4 HOH A 15 315 22 HOH HOH . D 4 HOH A 16 316 24 HOH HOH . D 4 HOH A 17 317 26 HOH HOH . D 4 HOH A 18 318 27 HOH HOH . D 4 HOH A 19 319 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 LVJ . . . C 3 18.325 53.524 79.336 1 72.86 ? O3 LVJ 202 A 1 HETATM 2 C C22 LVJ . . . C 3 17.904 52.461 78.902 1 72.4 ? C22 LVJ 202 A 1 HETATM 3 C C23 LVJ . . . C 3 17.854 52.16 77.401 1 74.81 ? C23 LVJ 202 A 1 HETATM 4 C C26 LVJ . . . C 3 18.856 53.041 76.664 1 75.52 ? C26 LVJ 202 A 1 HETATM 5 C C25 LVJ . . . C 3 18.215 50.695 77.153 1 75.56 ? C25 LVJ 202 A 1 HETATM 6 C C24 LVJ . . . C 3 16.452 52.437 76.857 1 70.73 ? C24 LVJ 202 A 1 HETATM 7 N N4 LVJ . . . C 3 17.466 51.491 79.71 1 72.14 ? N4 LVJ 202 A 1 HETATM 8 C C21 LVJ . . . C 3 17.508 51.605 81.162 1 67.46 ? C21 LVJ 202 A 1 HETATM 9 C C19 LVJ . . . C 3 18.077 50.379 81.84 1 55.36 ? C19 LVJ 202 A 1 HETATM 10 C C18 LVJ . . . C 3 17.233 49.479 82.493 1 52.74 ? C18 LVJ 202 A 1 HETATM 11 C C17 LVJ . . . C 3 17.729 48.304 83.018 1 57.63 ? C17 LVJ 202 A 1 HETATM 12 C C16 LVJ . . . C 3 19.074 48.012 82.909 1 57.85 ? C16 LVJ 202 A 1 HETATM 13 CL CL LVJ . . . C 3 19.665 46.509 83.533 1 47.16 ? CL LVJ 202 A 1 HETATM 14 C C20 LVJ . . . C 3 19.429 50.082 81.768 1 48.93 ? C20 LVJ 202 A 1 HETATM 15 CL CL1 LVJ . . . C 3 20.5 51.237 81.056 1 47.08 ? CL1 LVJ 202 A 1 HETATM 16 C C15 LVJ . . . C 3 19.96 48.897 82.291 1 51.03 ? C15 LVJ 202 A 1 HETATM 17 N N3 LVJ . . . C 3 21.346 48.593 82.191 1 59.87 ? N3 LVJ 202 A 1 HETATM 18 C C1 LVJ . . . C 3 22.007 48.419 81.016 1 60.92 ? C1 LVJ 202 A 1 HETATM 19 N N1 LVJ . . . C 3 21.487 48.523 79.82 1 62.88 ? N1 LVJ 202 A 1 HETATM 20 C C2 LVJ . . . C 3 22.545 48.269 78.946 1 63.02 ? C2 LVJ 202 A 1 HETATM 21 C C11 LVJ . . . C 3 23.707 48.003 79.674 1 59.99 ? C11 LVJ 202 A 1 HETATM 22 N N LVJ . . . C 3 23.336 48.109 81.007 1 55.73 ? N LVJ 202 A 1 HETATM 23 C C LVJ . . . C 3 24.198 47.945 82.173 1 56.83 ? C LVJ 202 A 1 HETATM 24 C C10 LVJ . . . C 3 24.911 47.706 79.051 1 61.74 ? C10 LVJ 202 A 1 HETATM 25 C C5 LVJ . . . C 3 24.927 47.693 77.666 1 74.87 ? C5 LVJ 202 A 1 HETATM 26 O O LVJ . . . C 3 26.052 47.379 76.95 1 90.78 ? O LVJ 202 A 1 HETATM 27 C C6 LVJ . . . C 3 27.246 47.043 77.684 1 97.62 ? C6 LVJ 202 A 1 HETATM 28 C C7 LVJ . . . C 3 28.24 46.421 76.732 1 95.33 ? C7 LVJ 202 A 1 HETATM 29 O O1 LVJ . . . C 3 28.562 47.395 75.719 1 96.75 ? O1 LVJ 202 A 1 HETATM 30 C C9 LVJ . . . C 3 27.638 45.205 76.038 1 88.07 ? C9 LVJ 202 A 1 HETATM 31 C C8 LVJ . . . C 3 29.527 46.047 77.463 1 92.36 ? C8 LVJ 202 A 1 HETATM 32 C C4 LVJ . . . C 3 23.782 47.988 76.905 1 71.01 ? C4 LVJ 202 A 1 HETATM 33 C C3 LVJ . . . C 3 22.582 48.263 77.561 1 68.18 ? C3 LVJ 202 A 1 HETATM 34 C C12 LVJ . . . C 3 23.706 48.102 75.413 1 66.48 ? C12 LVJ 202 A 1 HETATM 35 O O2 LVJ . . . C 3 22.62 48.191 74.849 1 61.76 ? O2 LVJ 202 A 1 HETATM 36 N N2 LVJ . . . C 3 24.856 48.163 74.739 1 74.21 ? N2 LVJ 202 A 1 HETATM 37 C C13 LVJ . . . C 3 24.939 48.518 73.33 1 76.38 ? C13 LVJ 202 A 1 HETATM 38 C C14 LVJ . . . C 3 24.85 47.215 72.454 1 85.21 ? C14 LVJ 202 A 1 HETATM 39 F F LVJ . . . C 3 25.079 47.458 71.178 1 82.59 ? F LVJ 202 A 1 HETATM 40 F F1 LVJ . . . C 3 23.649 46.654 72.516 1 94.48 ? F1 LVJ 202 A 1 HETATM 41 F F2 LVJ . . . C 3 25.732 46.292 72.838 1 78.87 ? F2 LVJ 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #