data_4WAV
#
_model_server_result.job_id            D584OG3D7Nj03zUpMoQVFw 
_model_server_result.datetime_utc      '2024-11-27 13:11:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4WAV 
#
_exptl.entry_id    4WAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WAV 
_cell.length_a            29.86 
_cell.length_b            131.942 
_cell.length_c            235.423 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 224 A LYS 224 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? 
covale ? covale2 B NZ LYS 224 B LYS 224 1_555 F C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                MPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 MPG sing 224 n n 
C2 C1 MPG sing 225 n n 
C3 C4 MPG sing 226 n n 
C4 C5 MPG sing 227 n n 
C5 C6 MPG sing 228 n n 
C6 C7 MPG sing 229 n n 
C7 C8 MPG sing 230 n n 
C8 C9 MPG sing 231 n n 
C9 C10 MPG doub 232 z n 
C10 C11 MPG sing 233 n n 
C11 C12 MPG sing 234 n n 
C12 C13 MPG sing 235 n n 
C13 C14 MPG sing 236 n n 
C14 C15 MPG sing 237 n n 
C15 C16 MPG sing 238 n n 
C16 C17 MPG sing 239 n n 
C17 C18 MPG sing 240 n n 
O1 C1 MPG sing 241 n n 
O1 CX3 MPG sing 242 n n 
CXD O2 MPG sing 243 n n 
CXD C21 MPG sing 244 n n 
CXD CX3 MPG sing 245 n n 
C21 O3 MPG sing 246 n n 
C2 H21C MPG sing 247 n n 
C2 H22C MPG sing 248 n n 
C3 H31C MPG sing 249 n n 
C3 H32C MPG sing 250 n n 
CX3 O4 MPG doub 251 n n 
C4 H41C MPG sing 252 n n 
C4 H42C MPG sing 253 n n 
C5 H51C MPG sing 254 n n 
C5 H52C MPG sing 255 n n 
C6 H61C MPG sing 256 n n 
C6 H62C MPG sing 257 n n 
C7 H71C MPG sing 258 n n 
C7 H72C MPG sing 259 n n 
C8 H81C MPG sing 260 n n 
C8 H82C MPG sing 261 n n 
C9 H9 MPG sing 262 n n 
C10 H10 MPG sing 263 n n 
C11 H111 MPG sing 264 n n 
C11 H112 MPG sing 265 n n 
C12 H121 MPG sing 266 n n 
C12 H122 MPG sing 267 n n 
C13 H131 MPG sing 268 n n 
C13 H132 MPG sing 269 n n 
C14 H141 MPG sing 270 n n 
C14 H142 MPG sing 271 n n 
C15 H151 MPG sing 272 n n 
C15 H152 MPG sing 273 n n 
C16 H161 MPG sing 274 n n 
C16 H162 MPG sing 275 n n 
C17 H171 MPG sing 276 n n 
C17 H172 MPG sing 277 n n 
C18 H181 MPG sing 278 n n 
C18 H182 MPG sing 279 n n 
C18 H183 MPG sing 280 n n 
C1 HX31 MPG sing 281 n n 
C1 HX32 MPG sing 282 n n 
CXD HXD MPG sing 283 n n 
O2 H2 MPG sing 284 n n 
C21 H211 MPG sing 285 n n 
C21 H212 MPG sing 286 n n 
O3 H3 MPG sing 287 n n 
#
_atom_sites.entry_id                     4WAV 
_atom_sites.fract_transf_matrix[1][1]    0.03349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RET A 1 301 260 RET RET . 
D 3 MPG A 1 302 301 MPG MPG . 
E 3 MPG A 1 303 302 MPG MPG . 
F 2 RET B 1 301 260 RET RET . 
G 4 HOH A 1 401 49 HOH HOH . 
G 4 HOH A 2 402 212 HOH HOH . 
G 4 HOH A 3 403 9 HOH HOH . 
G 4 HOH A 4 404 79 HOH HOH . 
G 4 HOH A 5 405 11 HOH HOH . 
G 4 HOH A 6 406 48 HOH HOH . 
G 4 HOH A 7 407 68 HOH HOH . 
G 4 HOH A 8 408 99 HOH HOH . 
G 4 HOH A 9 409 58 HOH HOH . 
G 4 HOH A 10 410 196 HOH HOH . 
G 4 HOH A 11 411 197 HOH HOH . 
G 4 HOH A 12 412 157 HOH HOH . 
G 4 HOH A 13 413 70 HOH HOH . 
G 4 HOH A 14 414 206 HOH HOH . 
G 4 HOH A 15 415 52 HOH HOH . 
G 4 HOH A 16 416 230 HOH HOH . 
G 4 HOH A 17 417 222 HOH HOH . 
G 4 HOH A 18 418 101 HOH HOH . 
G 4 HOH A 19 419 103 HOH HOH . 
G 4 HOH A 20 420 214 HOH HOH . 
G 4 HOH A 21 421 76 HOH HOH . 
G 4 HOH A 22 422 54 HOH HOH . 
G 4 HOH A 23 423 231 HOH HOH . 
G 4 HOH A 24 424 71 HOH HOH . 
G 4 HOH A 25 425 59 HOH HOH . 
G 4 HOH A 26 426 86 HOH HOH . 
G 4 HOH A 27 427 97 HOH HOH . 
G 4 HOH A 28 428 85 HOH HOH . 
G 4 HOH A 29 429 43 HOH HOH . 
G 4 HOH A 30 430 121 HOH HOH . 
G 4 HOH A 31 431 42 HOH HOH . 
G 4 HOH A 32 432 232 HOH HOH . 
G 4 HOH A 33 433 65 HOH HOH . 
G 4 HOH A 34 434 36 HOH HOH . 
G 4 HOH A 35 435 73 HOH HOH . 
G 4 HOH A 36 436 242 HOH HOH . 
G 4 HOH A 37 437 45 HOH HOH . 
G 4 HOH A 38 438 53 HOH HOH . 
G 4 HOH A 39 439 72 HOH HOH . 
G 4 HOH A 40 440 8 HOH HOH . 
G 4 HOH A 41 441 123 HOH HOH . 
G 4 HOH A 42 442 69 HOH HOH . 
G 4 HOH A 43 443 195 HOH HOH . 
G 4 HOH A 44 444 21 HOH HOH . 
G 4 HOH A 45 445 104 HOH HOH . 
G 4 HOH A 46 446 228 HOH HOH . 
G 4 HOH A 47 447 78 HOH HOH . 
G 4 HOH A 48 448 162 HOH HOH . 
G 4 HOH A 49 449 223 HOH HOH . 
G 4 HOH A 50 450 66 HOH HOH . 
G 4 HOH A 51 451 201 HOH HOH . 
G 4 HOH A 52 452 96 HOH HOH . 
G 4 HOH A 53 453 221 HOH HOH . 
G 4 HOH A 54 454 10 HOH HOH . 
G 4 HOH A 55 455 213 HOH HOH . 
G 4 HOH A 56 456 95 HOH HOH . 
G 4 HOH A 57 457 4 HOH HOH . 
G 4 HOH A 58 458 35 HOH HOH . 
G 4 HOH A 59 459 64 HOH HOH . 
G 4 HOH A 60 460 94 HOH HOH . 
G 4 HOH A 61 461 207 HOH HOH . 
G 4 HOH A 62 462 28 HOH HOH . 
G 4 HOH A 63 463 32 HOH HOH . 
G 4 HOH A 64 464 62 HOH HOH . 
G 4 HOH A 65 465 218 HOH HOH . 
G 4 HOH A 66 466 98 HOH HOH . 
G 4 HOH A 67 467 210 HOH HOH . 
G 4 HOH A 68 468 198 HOH HOH . 
G 4 HOH A 69 469 90 HOH HOH . 
G 4 HOH A 70 470 55 HOH HOH . 
G 4 HOH A 71 471 6 HOH HOH . 
G 4 HOH A 72 472 100 HOH HOH . 
G 4 HOH A 73 473 200 HOH HOH . 
G 4 HOH A 74 474 163 HOH HOH . 
G 4 HOH A 75 475 63 HOH HOH . 
G 4 HOH A 76 476 7 HOH HOH . 
G 4 HOH A 77 477 84 HOH HOH . 
G 4 HOH A 78 478 208 HOH HOH . 
G 4 HOH A 79 479 5 HOH HOH . 
G 4 HOH A 80 480 199 HOH HOH . 
G 4 HOH A 81 481 91 HOH HOH . 
G 4 HOH A 82 482 13 HOH HOH . 
G 4 HOH A 83 483 209 HOH HOH . 
G 4 HOH A 84 484 14 HOH HOH . 
G 4 HOH A 85 485 89 HOH HOH . 
G 4 HOH A 86 486 37 HOH HOH . 
G 4 HOH A 87 487 102 HOH HOH . 
H 4 HOH B 1 401 215 HOH HOH . 
H 4 HOH B 2 402 241 HOH HOH . 
H 4 HOH B 3 403 190 HOH HOH . 
H 4 HOH B 4 404 234 HOH HOH . 
H 4 HOH B 5 405 235 HOH HOH . 
H 4 HOH B 6 406 236 HOH HOH . 
H 4 HOH B 7 407 227 HOH HOH . 
H 4 HOH B 8 408 147 HOH HOH . 
H 4 HOH B 9 409 194 HOH HOH . 
H 4 HOH B 10 410 216 HOH HOH . 
H 4 HOH B 11 411 149 HOH HOH . 
H 4 HOH B 12 412 164 HOH HOH . 
H 4 HOH B 13 413 40 HOH HOH . 
H 4 HOH B 14 414 140 HOH HOH . 
H 4 HOH B 15 415 178 HOH HOH . 
H 4 HOH B 16 416 189 HOH HOH . 
H 4 HOH B 17 417 175 HOH HOH . 
H 4 HOH B 18 418 146 HOH HOH . 
H 4 HOH B 19 419 170 HOH HOH . 
H 4 HOH B 20 420 238 HOH HOH . 
H 4 HOH B 21 421 117 HOH HOH . 
H 4 HOH B 22 422 152 HOH HOH . 
H 4 HOH B 23 423 171 HOH HOH . 
H 4 HOH B 24 424 39 HOH HOH . 
H 4 HOH B 25 425 34 HOH HOH . 
H 4 HOH B 26 426 33 HOH HOH . 
H 4 HOH B 27 427 219 HOH HOH . 
H 4 HOH B 28 428 186 HOH HOH . 
H 4 HOH B 29 429 185 HOH HOH . 
H 4 HOH B 30 430 111 HOH HOH . 
H 4 HOH B 31 431 176 HOH HOH . 
H 4 HOH B 32 432 113 HOH HOH . 
H 4 HOH B 33 433 116 HOH HOH . 
H 4 HOH B 34 434 110 HOH HOH . 
H 4 HOH B 35 435 92 HOH HOH . 
H 4 HOH B 36 436 177 HOH HOH . 
H 4 HOH B 37 437 165 HOH HOH . 
H 4 HOH B 38 438 179 HOH HOH . 
H 4 HOH B 39 439 226 HOH HOH . 
H 4 HOH B 40 440 160 HOH HOH . 
H 4 HOH B 41 441 148 HOH HOH . 
H 4 HOH B 42 442 150 HOH HOH . 
H 4 HOH B 43 443 93 HOH HOH . 
H 4 HOH B 44 444 107 HOH HOH . 
H 4 HOH B 45 445 229 HOH HOH . 
H 4 HOH B 46 446 237 HOH HOH . 
H 4 HOH B 47 447 47 HOH HOH . 
H 4 HOH B 48 448 151 HOH HOH . 
H 4 HOH B 49 449 106 HOH HOH . 
H 4 HOH B 50 450 225 HOH HOH . 
H 4 HOH B 51 451 134 HOH HOH . 
H 4 HOH B 52 452 136 HOH HOH . 
H 4 HOH B 53 453 109 HOH HOH . 
H 4 HOH B 54 454 81 HOH HOH . 
H 4 HOH B 55 455 181 HOH HOH . 
H 4 HOH B 56 456 159 HOH HOH . 
H 4 HOH B 57 457 142 HOH HOH . 
H 4 HOH B 58 458 239 HOH HOH . 
H 4 HOH B 59 459 183 HOH HOH . 
H 4 HOH B 60 460 144 HOH HOH . 
H 4 HOH B 61 461 145 HOH HOH . 
H 4 HOH B 62 462 161 HOH HOH . 
H 4 HOH B 63 463 240 HOH HOH . 
H 4 HOH B 64 464 120 HOH HOH . 
H 4 HOH B 65 465 158 HOH HOH . 
H 4 HOH B 66 466 155 HOH HOH . 
H 4 HOH B 67 467 154 HOH HOH . 
H 4 HOH B 68 468 143 HOH HOH . 
H 4 HOH B 69 469 192 HOH HOH . 
H 4 HOH B 70 470 202 HOH HOH . 
H 4 HOH B 71 471 137 HOH HOH . 
H 4 HOH B 72 472 139 HOH HOH . 
H 4 HOH B 73 473 233 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 MPG . . . D 3 5.933 11.137 44.069 1 41.39 ? C2 MPG 302 A 1 
HETATM 2 C C3 MPG . . . D 3 5.896 9.95 43.11 1 37.05 ? C3 MPG 302 A 1 
HETATM 3 C C4 MPG . . . D 3 4.99 10.292 41.947 1 33.16 ? C4 MPG 302 A 1 
HETATM 4 C C5 MPG . . . D 3 5.391 9.556 40.7 1 31.65 ? C5 MPG 302 A 1 
HETATM 5 C C6 MPG . . . D 3 4.712 10.259 39.55 1 32.16 ? C6 MPG 302 A 1 
HETATM 6 C C7 MPG . . . D 3 4.479 9.311 38.388 1 32.79 ? C7 MPG 302 A 1 
HETATM 7 C C8 MPG . . . D 3 5.025 9.932 37.112 1 32.3 ? C8 MPG 302 A 1 
HETATM 8 C C9 MPG . . . D 3 3.913 10.008 36.115 1 32.64 ? C9 MPG 302 A 1 
HETATM 9 C C10 MPG . . . D 3 4.031 9.541 34.874 1 35.84 ? C10 MPG 302 A 1 
HETATM 10 C C11 MPG . . . D 3 5.275 8.87 34.322 1 38.91 ? C11 MPG 302 A 1 
HETATM 11 C C12 MPG . . . D 3 5.01 8.547 32.851 1 41.92 ? C12 MPG 302 A 1 
HETATM 12 C C13 MPG . . . D 3 4.57 9.78 32.031 1 42.39 ? C13 MPG 302 A 1 
HETATM 13 C C14 MPG . . . D 3 3.462 9.465 31.019 1 42.66 ? C14 MPG 302 A 1 
HETATM 14 C C15 MPG . . . D 3 4.04 8.863 29.729 1 42.02 ? C15 MPG 302 A 1 
HETATM 15 C C16 MPG . . . D 3 3.279 9.281 28.479 1 42.36 ? C16 MPG 302 A 1 
HETATM 16 C C17 MPG . . . D 3 4.196 9.465 27.272 1 41.94 ? C17 MPG 302 A 1 
HETATM 17 C C18 MPG . . . D 3 3.416 9.983 26.078 1 41.84 ? C18 MPG 302 A 1 
HETATM 18 O O1 MPG . . . D 3 5.67 9.35 45.655 1 46.37 ? O1 MPG 302 A 1 
HETATM 19 C C1 MPG . . . D 3 5.326 10.712 45.396 1 44.57 ? C1 MPG 302 A 1 
HETATM 20 C CXD MPG . . . D 3 7.014 9.755 47.863 1 63.61 ? CXD MPG 302 A 1 
HETATM 21 O O2 MPG . . . D 3 7.932 8.853 48.523 1 63.6 ? O2 MPG 302 A 1 
HETATM 22 C C21 MPG . . . D 3 6.273 10.634 48.899 1 61.7 ? C21 MPG 302 A 1 
HETATM 23 O O3 MPG . . . D 3 7.102 10.907 50.035 1 61.36 ? O3 MPG 302 A 1 
HETATM 24 C CX3 MPG . . . D 3 6.062 8.941 46.998 1 57.18 ? CX3 MPG 302 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#