data_4WAV # _model_server_result.job_id wKWnPKpjDeGmSjc59W5OmA _model_server_result.datetime_utc '2024-11-02 03:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4WAV # _exptl.entry_id 4WAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WAV _cell.length_a 29.86 _cell.length_b 131.942 _cell.length_c 235.423 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 224 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? covale ? covale2 B NZ LYS 224 B LYS 224 1_555 F C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 224 n n C2 C1 MPG sing 225 n n C3 C4 MPG sing 226 n n C4 C5 MPG sing 227 n n C5 C6 MPG sing 228 n n C6 C7 MPG sing 229 n n C7 C8 MPG sing 230 n n C8 C9 MPG sing 231 n n C9 C10 MPG doub 232 z n C10 C11 MPG sing 233 n n C11 C12 MPG sing 234 n n C12 C13 MPG sing 235 n n C13 C14 MPG sing 236 n n C14 C15 MPG sing 237 n n C15 C16 MPG sing 238 n n C16 C17 MPG sing 239 n n C17 C18 MPG sing 240 n n O1 C1 MPG sing 241 n n O1 CX3 MPG sing 242 n n CXD O2 MPG sing 243 n n CXD C21 MPG sing 244 n n CXD CX3 MPG sing 245 n n C21 O3 MPG sing 246 n n C2 H21C MPG sing 247 n n C2 H22C MPG sing 248 n n C3 H31C MPG sing 249 n n C3 H32C MPG sing 250 n n CX3 O4 MPG doub 251 n n C4 H41C MPG sing 252 n n C4 H42C MPG sing 253 n n C5 H51C MPG sing 254 n n C5 H52C MPG sing 255 n n C6 H61C MPG sing 256 n n C6 H62C MPG sing 257 n n C7 H71C MPG sing 258 n n C7 H72C MPG sing 259 n n C8 H81C MPG sing 260 n n C8 H82C MPG sing 261 n n C9 H9 MPG sing 262 n n C10 H10 MPG sing 263 n n C11 H111 MPG sing 264 n n C11 H112 MPG sing 265 n n C12 H121 MPG sing 266 n n C12 H122 MPG sing 267 n n C13 H131 MPG sing 268 n n C13 H132 MPG sing 269 n n C14 H141 MPG sing 270 n n C14 H142 MPG sing 271 n n C15 H151 MPG sing 272 n n C15 H152 MPG sing 273 n n C16 H161 MPG sing 274 n n C16 H162 MPG sing 275 n n C17 H171 MPG sing 276 n n C17 H172 MPG sing 277 n n C18 H181 MPG sing 278 n n C18 H182 MPG sing 279 n n C18 H183 MPG sing 280 n n C1 HX31 MPG sing 281 n n C1 HX32 MPG sing 282 n n CXD HXD MPG sing 283 n n O2 H2 MPG sing 284 n n C21 H211 MPG sing 285 n n C21 H212 MPG sing 286 n n O3 H3 MPG sing 287 n n # _atom_sites.entry_id 4WAV _atom_sites.fract_transf_matrix[1][1] 0.03349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 260 RET RET . D 3 MPG A 1 302 301 MPG MPG . E 3 MPG A 1 303 302 MPG MPG . F 2 RET B 1 301 260 RET RET . G 4 HOH A 1 401 49 HOH HOH . G 4 HOH A 2 402 212 HOH HOH . G 4 HOH A 3 403 9 HOH HOH . G 4 HOH A 4 404 79 HOH HOH . G 4 HOH A 5 405 11 HOH HOH . G 4 HOH A 6 406 48 HOH HOH . G 4 HOH A 7 407 68 HOH HOH . G 4 HOH A 8 408 99 HOH HOH . G 4 HOH A 9 409 58 HOH HOH . G 4 HOH A 10 410 196 HOH HOH . G 4 HOH A 11 411 197 HOH HOH . G 4 HOH A 12 412 157 HOH HOH . G 4 HOH A 13 413 70 HOH HOH . G 4 HOH A 14 414 206 HOH HOH . G 4 HOH A 15 415 52 HOH HOH . G 4 HOH A 16 416 230 HOH HOH . G 4 HOH A 17 417 222 HOH HOH . G 4 HOH A 18 418 101 HOH HOH . G 4 HOH A 19 419 103 HOH HOH . G 4 HOH A 20 420 214 HOH HOH . G 4 HOH A 21 421 76 HOH HOH . G 4 HOH A 22 422 54 HOH HOH . G 4 HOH A 23 423 231 HOH HOH . G 4 HOH A 24 424 71 HOH HOH . G 4 HOH A 25 425 59 HOH HOH . G 4 HOH A 26 426 86 HOH HOH . G 4 HOH A 27 427 97 HOH HOH . G 4 HOH A 28 428 85 HOH HOH . G 4 HOH A 29 429 43 HOH HOH . G 4 HOH A 30 430 121 HOH HOH . G 4 HOH A 31 431 42 HOH HOH . G 4 HOH A 32 432 232 HOH HOH . G 4 HOH A 33 433 65 HOH HOH . G 4 HOH A 34 434 36 HOH HOH . G 4 HOH A 35 435 73 HOH HOH . G 4 HOH A 36 436 242 HOH HOH . G 4 HOH A 37 437 45 HOH HOH . G 4 HOH A 38 438 53 HOH HOH . G 4 HOH A 39 439 72 HOH HOH . G 4 HOH A 40 440 8 HOH HOH . G 4 HOH A 41 441 123 HOH HOH . G 4 HOH A 42 442 69 HOH HOH . G 4 HOH A 43 443 195 HOH HOH . G 4 HOH A 44 444 21 HOH HOH . G 4 HOH A 45 445 104 HOH HOH . G 4 HOH A 46 446 228 HOH HOH . G 4 HOH A 47 447 78 HOH HOH . G 4 HOH A 48 448 162 HOH HOH . G 4 HOH A 49 449 223 HOH HOH . G 4 HOH A 50 450 66 HOH HOH . G 4 HOH A 51 451 201 HOH HOH . G 4 HOH A 52 452 96 HOH HOH . G 4 HOH A 53 453 221 HOH HOH . G 4 HOH A 54 454 10 HOH HOH . G 4 HOH A 55 455 213 HOH HOH . G 4 HOH A 56 456 95 HOH HOH . G 4 HOH A 57 457 4 HOH HOH . G 4 HOH A 58 458 35 HOH HOH . G 4 HOH A 59 459 64 HOH HOH . G 4 HOH A 60 460 94 HOH HOH . G 4 HOH A 61 461 207 HOH HOH . G 4 HOH A 62 462 28 HOH HOH . G 4 HOH A 63 463 32 HOH HOH . G 4 HOH A 64 464 62 HOH HOH . G 4 HOH A 65 465 218 HOH HOH . G 4 HOH A 66 466 98 HOH HOH . G 4 HOH A 67 467 210 HOH HOH . G 4 HOH A 68 468 198 HOH HOH . G 4 HOH A 69 469 90 HOH HOH . G 4 HOH A 70 470 55 HOH HOH . G 4 HOH A 71 471 6 HOH HOH . G 4 HOH A 72 472 100 HOH HOH . G 4 HOH A 73 473 200 HOH HOH . G 4 HOH A 74 474 163 HOH HOH . G 4 HOH A 75 475 63 HOH HOH . G 4 HOH A 76 476 7 HOH HOH . G 4 HOH A 77 477 84 HOH HOH . G 4 HOH A 78 478 208 HOH HOH . G 4 HOH A 79 479 5 HOH HOH . G 4 HOH A 80 480 199 HOH HOH . G 4 HOH A 81 481 91 HOH HOH . G 4 HOH A 82 482 13 HOH HOH . G 4 HOH A 83 483 209 HOH HOH . G 4 HOH A 84 484 14 HOH HOH . G 4 HOH A 85 485 89 HOH HOH . G 4 HOH A 86 486 37 HOH HOH . G 4 HOH A 87 487 102 HOH HOH . H 4 HOH B 1 401 215 HOH HOH . H 4 HOH B 2 402 241 HOH HOH . H 4 HOH B 3 403 190 HOH HOH . H 4 HOH B 4 404 234 HOH HOH . H 4 HOH B 5 405 235 HOH HOH . H 4 HOH B 6 406 236 HOH HOH . H 4 HOH B 7 407 227 HOH HOH . H 4 HOH B 8 408 147 HOH HOH . H 4 HOH B 9 409 194 HOH HOH . H 4 HOH B 10 410 216 HOH HOH . H 4 HOH B 11 411 149 HOH HOH . H 4 HOH B 12 412 164 HOH HOH . H 4 HOH B 13 413 40 HOH HOH . H 4 HOH B 14 414 140 HOH HOH . H 4 HOH B 15 415 178 HOH HOH . H 4 HOH B 16 416 189 HOH HOH . H 4 HOH B 17 417 175 HOH HOH . H 4 HOH B 18 418 146 HOH HOH . H 4 HOH B 19 419 170 HOH HOH . H 4 HOH B 20 420 238 HOH HOH . H 4 HOH B 21 421 117 HOH HOH . H 4 HOH B 22 422 152 HOH HOH . H 4 HOH B 23 423 171 HOH HOH . H 4 HOH B 24 424 39 HOH HOH . H 4 HOH B 25 425 34 HOH HOH . H 4 HOH B 26 426 33 HOH HOH . H 4 HOH B 27 427 219 HOH HOH . H 4 HOH B 28 428 186 HOH HOH . H 4 HOH B 29 429 185 HOH HOH . H 4 HOH B 30 430 111 HOH HOH . H 4 HOH B 31 431 176 HOH HOH . H 4 HOH B 32 432 113 HOH HOH . H 4 HOH B 33 433 116 HOH HOH . H 4 HOH B 34 434 110 HOH HOH . H 4 HOH B 35 435 92 HOH HOH . H 4 HOH B 36 436 177 HOH HOH . H 4 HOH B 37 437 165 HOH HOH . H 4 HOH B 38 438 179 HOH HOH . H 4 HOH B 39 439 226 HOH HOH . H 4 HOH B 40 440 160 HOH HOH . H 4 HOH B 41 441 148 HOH HOH . H 4 HOH B 42 442 150 HOH HOH . H 4 HOH B 43 443 93 HOH HOH . H 4 HOH B 44 444 107 HOH HOH . H 4 HOH B 45 445 229 HOH HOH . H 4 HOH B 46 446 237 HOH HOH . H 4 HOH B 47 447 47 HOH HOH . H 4 HOH B 48 448 151 HOH HOH . H 4 HOH B 49 449 106 HOH HOH . H 4 HOH B 50 450 225 HOH HOH . H 4 HOH B 51 451 134 HOH HOH . H 4 HOH B 52 452 136 HOH HOH . H 4 HOH B 53 453 109 HOH HOH . H 4 HOH B 54 454 81 HOH HOH . H 4 HOH B 55 455 181 HOH HOH . H 4 HOH B 56 456 159 HOH HOH . H 4 HOH B 57 457 142 HOH HOH . H 4 HOH B 58 458 239 HOH HOH . H 4 HOH B 59 459 183 HOH HOH . H 4 HOH B 60 460 144 HOH HOH . H 4 HOH B 61 461 145 HOH HOH . H 4 HOH B 62 462 161 HOH HOH . H 4 HOH B 63 463 240 HOH HOH . H 4 HOH B 64 464 120 HOH HOH . H 4 HOH B 65 465 158 HOH HOH . H 4 HOH B 66 466 155 HOH HOH . H 4 HOH B 67 467 154 HOH HOH . H 4 HOH B 68 468 143 HOH HOH . H 4 HOH B 69 469 192 HOH HOH . H 4 HOH B 70 470 202 HOH HOH . H 4 HOH B 71 471 137 HOH HOH . H 4 HOH B 72 472 139 HOH HOH . H 4 HOH B 73 473 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . D 3 5.933 11.137 44.069 1 41.39 ? C2 MPG 302 A 1 HETATM 2 C C3 MPG . . . D 3 5.896 9.95 43.11 1 37.05 ? C3 MPG 302 A 1 HETATM 3 C C4 MPG . . . D 3 4.99 10.292 41.947 1 33.16 ? C4 MPG 302 A 1 HETATM 4 C C5 MPG . . . D 3 5.391 9.556 40.7 1 31.65 ? C5 MPG 302 A 1 HETATM 5 C C6 MPG . . . D 3 4.712 10.259 39.55 1 32.16 ? C6 MPG 302 A 1 HETATM 6 C C7 MPG . . . D 3 4.479 9.311 38.388 1 32.79 ? C7 MPG 302 A 1 HETATM 7 C C8 MPG . . . D 3 5.025 9.932 37.112 1 32.3 ? C8 MPG 302 A 1 HETATM 8 C C9 MPG . . . D 3 3.913 10.008 36.115 1 32.64 ? C9 MPG 302 A 1 HETATM 9 C C10 MPG . . . D 3 4.031 9.541 34.874 1 35.84 ? C10 MPG 302 A 1 HETATM 10 C C11 MPG . . . D 3 5.275 8.87 34.322 1 38.91 ? C11 MPG 302 A 1 HETATM 11 C C12 MPG . . . D 3 5.01 8.547 32.851 1 41.92 ? C12 MPG 302 A 1 HETATM 12 C C13 MPG . . . D 3 4.57 9.78 32.031 1 42.39 ? C13 MPG 302 A 1 HETATM 13 C C14 MPG . . . D 3 3.462 9.465 31.019 1 42.66 ? C14 MPG 302 A 1 HETATM 14 C C15 MPG . . . D 3 4.04 8.863 29.729 1 42.02 ? C15 MPG 302 A 1 HETATM 15 C C16 MPG . . . D 3 3.279 9.281 28.479 1 42.36 ? C16 MPG 302 A 1 HETATM 16 C C17 MPG . . . D 3 4.196 9.465 27.272 1 41.94 ? C17 MPG 302 A 1 HETATM 17 C C18 MPG . . . D 3 3.416 9.983 26.078 1 41.84 ? C18 MPG 302 A 1 HETATM 18 O O1 MPG . . . D 3 5.67 9.35 45.655 1 46.37 ? O1 MPG 302 A 1 HETATM 19 C C1 MPG . . . D 3 5.326 10.712 45.396 1 44.57 ? C1 MPG 302 A 1 HETATM 20 C CXD MPG . . . D 3 7.014 9.755 47.863 1 63.61 ? CXD MPG 302 A 1 HETATM 21 O O2 MPG . . . D 3 7.932 8.853 48.523 1 63.6 ? O2 MPG 302 A 1 HETATM 22 C C21 MPG . . . D 3 6.273 10.634 48.899 1 61.7 ? C21 MPG 302 A 1 HETATM 23 O O3 MPG . . . D 3 7.102 10.907 50.035 1 61.36 ? O3 MPG 302 A 1 HETATM 24 C CX3 MPG . . . D 3 6.062 8.941 46.998 1 57.18 ? CX3 MPG 302 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #