data_4WB6 # _model_server_result.job_id e8JwQItkQ-4p7HelTAMPIA _model_server_result.datetime_utc '2024-10-13 10:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4WB6 # _exptl.entry_id 4WB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.12 _cell.angle_gamma 90 _cell.entry_id 4WB6 _cell.length_a 56.169 _cell.length_b 90.193 _cell.length_c 90.377 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K,M 1 1 B,D,H,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 138 A PHE 138 1_555 A N SEP 139 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 139 A SEP 139 1_555 A N GLU 140 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C GLY 9 B GLY 9 1_555 B N SEP 10 B SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C SEP 10 B SEP 10 1_555 B N GLU 11 B GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C TRP 196 B TRP 196 1_555 B N TPO 197 B TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C TPO 197 B TPO 197 1_555 B N LEU 198 B LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 B C VAL 337 B VAL 337 1_555 B N SEP 338 B SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C SEP 338 B SEP 338 1_555 B N ILE 339 B ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASN 171 A ASN 171 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 A OD2 ASP 184 A ASP 184 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 A OD1 ASP 184 A ASP 184 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc4 A OD2 ASP 184 A ASP 184 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 E O1G ATP . A ATP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc6 E O3B ATP . A ATP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 E O1A ATP . A ATP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc8 E O3G ATP . A ATP 401 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc9 E O2B ATP . A ATP 401 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc10 F MG MG . A MG 402 1_555 K O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc11 G MG MG . A MG 403 1_555 K O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc12 G MG MG . A MG 403 1_555 K O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc13 B OD1 ASN 171 B ASN 171 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc14 B OD2 ASP 184 B ASP 184 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc15 B OD1 ASP 184 B ASP 184 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc16 B OD2 ASP 184 B ASP 184 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc17 H O2G ATP . B ATP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc18 H O3B ATP . B ATP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc19 H O2A ATP . B ATP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc20 H O1G ATP . B ATP 401 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc21 H O1B ATP . B ATP 401 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc22 I MG MG . B MG 402 1_555 L O HOH . B HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc23 J MG MG . B MG 403 1_555 L O HOH . B HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc24 J MG MG . B MG 403 1_555 L O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WB6 _atom_sites.fract_transf_matrix[1][1] 0.017803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00191 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ATP A 1 401 1 ATP ATP . F 5 MG A 1 402 1 MG MG . G 5 MG A 1 403 2 MG MG . H 4 ATP B 1 401 1 ATP ATP . I 5 MG B 1 402 1 MG MG . J 5 MG B 1 403 2 MG MG . K 6 HOH A 1 501 65 HOH HOH . K 6 HOH A 2 502 14 HOH HOH . K 6 HOH A 3 503 131 HOH HOH . K 6 HOH A 4 504 179 HOH HOH . K 6 HOH A 5 505 121 HOH HOH . K 6 HOH A 6 506 122 HOH HOH . K 6 HOH A 7 507 136 HOH HOH . K 6 HOH A 8 508 169 HOH HOH . K 6 HOH A 9 509 190 HOH HOH . K 6 HOH A 10 510 159 HOH HOH . K 6 HOH A 11 511 1 HOH HOH . K 6 HOH A 12 512 2 HOH HOH . K 6 HOH A 13 513 5 HOH HOH . K 6 HOH A 14 514 6 HOH HOH . K 6 HOH A 15 515 8 HOH HOH . K 6 HOH A 16 516 9 HOH HOH . K 6 HOH A 17 517 10 HOH HOH . K 6 HOH A 18 518 15 HOH HOH . K 6 HOH A 19 519 16 HOH HOH . K 6 HOH A 20 520 17 HOH HOH . K 6 HOH A 21 521 18 HOH HOH . K 6 HOH A 22 522 20 HOH HOH . K 6 HOH A 23 523 22 HOH HOH . K 6 HOH A 24 524 23 HOH HOH . K 6 HOH A 25 525 25 HOH HOH . K 6 HOH A 26 526 26 HOH HOH . K 6 HOH A 27 527 29 HOH HOH . K 6 HOH A 28 528 30 HOH HOH . K 6 HOH A 29 529 31 HOH HOH . K 6 HOH A 30 530 32 HOH HOH . K 6 HOH A 31 531 33 HOH HOH . K 6 HOH A 32 532 35 HOH HOH . K 6 HOH A 33 533 36 HOH HOH . K 6 HOH A 34 534 40 HOH HOH . K 6 HOH A 35 535 41 HOH HOH . K 6 HOH A 36 536 53 HOH HOH . K 6 HOH A 37 537 54 HOH HOH . K 6 HOH A 38 538 57 HOH HOH . K 6 HOH A 39 539 59 HOH HOH . K 6 HOH A 40 540 60 HOH HOH . K 6 HOH A 41 541 61 HOH HOH . K 6 HOH A 42 542 63 HOH HOH . K 6 HOH A 43 543 66 HOH HOH . K 6 HOH A 44 544 67 HOH HOH . K 6 HOH A 45 545 68 HOH HOH . K 6 HOH A 46 546 71 HOH HOH . K 6 HOH A 47 547 72 HOH HOH . K 6 HOH A 48 548 73 HOH HOH . K 6 HOH A 49 549 74 HOH HOH . K 6 HOH A 50 550 76 HOH HOH . K 6 HOH A 51 551 77 HOH HOH . K 6 HOH A 52 552 78 HOH HOH . K 6 HOH A 53 553 82 HOH HOH . K 6 HOH A 54 554 83 HOH HOH . K 6 HOH A 55 555 84 HOH HOH . K 6 HOH A 56 556 89 HOH HOH . K 6 HOH A 57 557 91 HOH HOH . K 6 HOH A 58 558 95 HOH HOH . K 6 HOH A 59 559 97 HOH HOH . K 6 HOH A 60 560 99 HOH HOH . K 6 HOH A 61 561 101 HOH HOH . K 6 HOH A 62 562 102 HOH HOH . K 6 HOH A 63 563 103 HOH HOH . K 6 HOH A 64 564 105 HOH HOH . K 6 HOH A 65 565 106 HOH HOH . K 6 HOH A 66 566 108 HOH HOH . K 6 HOH A 67 567 109 HOH HOH . K 6 HOH A 68 568 110 HOH HOH . K 6 HOH A 69 569 111 HOH HOH . K 6 HOH A 70 570 113 HOH HOH . K 6 HOH A 71 571 115 HOH HOH . K 6 HOH A 72 572 116 HOH HOH . K 6 HOH A 73 573 118 HOH HOH . K 6 HOH A 74 574 119 HOH HOH . K 6 HOH A 75 575 124 HOH HOH . K 6 HOH A 76 576 128 HOH HOH . K 6 HOH A 77 577 129 HOH HOH . K 6 HOH A 78 578 132 HOH HOH . K 6 HOH A 79 579 134 HOH HOH . K 6 HOH A 80 580 137 HOH HOH . K 6 HOH A 81 581 138 HOH HOH . K 6 HOH A 82 582 142 HOH HOH . K 6 HOH A 83 583 144 HOH HOH . K 6 HOH A 84 584 145 HOH HOH . K 6 HOH A 85 585 146 HOH HOH . K 6 HOH A 86 586 147 HOH HOH . K 6 HOH A 87 587 148 HOH HOH . K 6 HOH A 88 588 150 HOH HOH . K 6 HOH A 89 589 151 HOH HOH . K 6 HOH A 90 590 154 HOH HOH . K 6 HOH A 91 591 158 HOH HOH . K 6 HOH A 92 592 160 HOH HOH . K 6 HOH A 93 593 161 HOH HOH . K 6 HOH A 94 594 162 HOH HOH . K 6 HOH A 95 595 164 HOH HOH . K 6 HOH A 96 596 165 HOH HOH . K 6 HOH A 97 597 173 HOH HOH . K 6 HOH A 98 598 176 HOH HOH . K 6 HOH A 99 599 177 HOH HOH . K 6 HOH A 100 600 178 HOH HOH . K 6 HOH A 101 601 181 HOH HOH . K 6 HOH A 102 602 182 HOH HOH . K 6 HOH A 103 603 183 HOH HOH . K 6 HOH A 104 604 187 HOH HOH . K 6 HOH A 105 605 188 HOH HOH . K 6 HOH A 106 606 193 HOH HOH . K 6 HOH A 107 607 195 HOH HOH . K 6 HOH A 108 608 197 HOH HOH . L 6 HOH B 1 501 117 HOH HOH . L 6 HOH B 2 502 64 HOH HOH . L 6 HOH B 3 503 133 HOH HOH . L 6 HOH B 4 504 139 HOH HOH . L 6 HOH B 5 505 3 HOH HOH . L 6 HOH B 6 506 4 HOH HOH . L 6 HOH B 7 507 7 HOH HOH . L 6 HOH B 8 508 11 HOH HOH . L 6 HOH B 9 509 12 HOH HOH . L 6 HOH B 10 510 13 HOH HOH . L 6 HOH B 11 511 24 HOH HOH . L 6 HOH B 12 512 27 HOH HOH . L 6 HOH B 13 513 28 HOH HOH . L 6 HOH B 14 514 34 HOH HOH . L 6 HOH B 15 515 37 HOH HOH . L 6 HOH B 16 516 38 HOH HOH . L 6 HOH B 17 517 39 HOH HOH . L 6 HOH B 18 518 42 HOH HOH . L 6 HOH B 19 519 44 HOH HOH . L 6 HOH B 20 520 45 HOH HOH . L 6 HOH B 21 521 46 HOH HOH . L 6 HOH B 22 522 48 HOH HOH . L 6 HOH B 23 523 49 HOH HOH . L 6 HOH B 24 524 50 HOH HOH . L 6 HOH B 25 525 51 HOH HOH . L 6 HOH B 26 526 52 HOH HOH . L 6 HOH B 27 527 55 HOH HOH . L 6 HOH B 28 528 58 HOH HOH . L 6 HOH B 29 529 62 HOH HOH . L 6 HOH B 30 530 69 HOH HOH . L 6 HOH B 31 531 70 HOH HOH . L 6 HOH B 32 532 75 HOH HOH . L 6 HOH B 33 533 80 HOH HOH . L 6 HOH B 34 534 81 HOH HOH . L 6 HOH B 35 535 85 HOH HOH . L 6 HOH B 36 536 86 HOH HOH . L 6 HOH B 37 537 87 HOH HOH . L 6 HOH B 38 538 90 HOH HOH . L 6 HOH B 39 539 92 HOH HOH . L 6 HOH B 40 540 94 HOH HOH . L 6 HOH B 41 541 96 HOH HOH . L 6 HOH B 42 542 98 HOH HOH . L 6 HOH B 43 543 100 HOH HOH . L 6 HOH B 44 544 104 HOH HOH . L 6 HOH B 45 545 107 HOH HOH . L 6 HOH B 46 546 112 HOH HOH . L 6 HOH B 47 547 114 HOH HOH . L 6 HOH B 48 548 120 HOH HOH . L 6 HOH B 49 549 123 HOH HOH . L 6 HOH B 50 550 125 HOH HOH . L 6 HOH B 51 551 126 HOH HOH . L 6 HOH B 52 552 127 HOH HOH . L 6 HOH B 53 553 130 HOH HOH . L 6 HOH B 54 554 135 HOH HOH . L 6 HOH B 55 555 140 HOH HOH . L 6 HOH B 56 556 141 HOH HOH . L 6 HOH B 57 557 143 HOH HOH . L 6 HOH B 58 558 149 HOH HOH . L 6 HOH B 59 559 152 HOH HOH . L 6 HOH B 60 560 153 HOH HOH . L 6 HOH B 61 561 155 HOH HOH . L 6 HOH B 62 562 156 HOH HOH . L 6 HOH B 63 563 163 HOH HOH . L 6 HOH B 64 564 166 HOH HOH . L 6 HOH B 65 565 167 HOH HOH . L 6 HOH B 66 566 168 HOH HOH . L 6 HOH B 67 567 170 HOH HOH . L 6 HOH B 68 568 171 HOH HOH . L 6 HOH B 69 569 172 HOH HOH . L 6 HOH B 70 570 174 HOH HOH . L 6 HOH B 71 571 175 HOH HOH . L 6 HOH B 72 572 184 HOH HOH . L 6 HOH B 73 573 185 HOH HOH . L 6 HOH B 74 574 186 HOH HOH . L 6 HOH B 75 575 189 HOH HOH . L 6 HOH B 76 576 191 HOH HOH . L 6 HOH B 77 577 192 HOH HOH . L 6 HOH B 78 578 194 HOH HOH . L 6 HOH B 79 579 196 HOH HOH . M 6 HOH I 1 101 47 HOH HOH . M 6 HOH I 2 102 19 HOH HOH . M 6 HOH I 3 103 21 HOH HOH . M 6 HOH I 4 104 56 HOH HOH . M 6 HOH I 5 105 79 HOH HOH . M 6 HOH I 6 106 88 HOH HOH . M 6 HOH I 7 107 93 HOH HOH . M 6 HOH I 8 108 157 HOH HOH . N 6 HOH J 1 101 43 HOH HOH . N 6 HOH J 2 102 180 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -8.491 _atom_site.Cartn_y -15.756 _atom_site.Cartn_z -32.939 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #