data_4WBL # _model_server_result.job_id ORMr5sJITD9qJ4tkQcwisQ _model_server_result.datetime_utc '2024-11-25 13:14:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4WBL # _exptl.entry_id 4WBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.73 _cell.angle_gamma 90 _cell.entry_id 4WBL _cell.length_a 40.22 _cell.length_b 47.77 _cell.length_c 54.09 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4WBL _atom_sites.fract_transf_matrix[1][1] 0.024863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002059 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 2 CL A 1 402 1 CL CL . D 3 GOL A 1 403 1 GOL GOL . E 4 HOH A 1 501 13 HOH HOH . E 4 HOH A 2 502 23 HOH HOH . E 4 HOH A 3 503 33 HOH HOH . E 4 HOH A 4 504 24 HOH HOH . E 4 HOH A 5 505 45 HOH HOH . E 4 HOH A 6 506 38 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 36 HOH HOH . E 4 HOH A 9 509 17 HOH HOH . E 4 HOH A 10 510 22 HOH HOH . E 4 HOH A 11 511 66 HOH HOH . E 4 HOH A 12 512 35 HOH HOH . E 4 HOH A 13 513 19 HOH HOH . E 4 HOH A 14 514 21 HOH HOH . E 4 HOH A 15 515 60 HOH HOH . E 4 HOH A 16 516 53 HOH HOH . E 4 HOH A 17 517 39 HOH HOH . E 4 HOH A 18 518 69 HOH HOH . E 4 HOH A 19 519 73 HOH HOH . E 4 HOH A 20 520 28 HOH HOH . E 4 HOH A 21 521 76 HOH HOH . E 4 HOH A 22 522 68 HOH HOH . E 4 HOH A 23 523 51 HOH HOH . E 4 HOH A 24 524 50 HOH HOH . E 4 HOH A 25 525 65 HOH HOH . E 4 HOH A 26 526 48 HOH HOH . E 4 HOH A 27 527 77 HOH HOH . E 4 HOH A 28 528 1 HOH HOH . E 4 HOH A 29 529 2 HOH HOH . E 4 HOH A 30 530 3 HOH HOH . E 4 HOH A 31 531 4 HOH HOH . E 4 HOH A 32 532 5 HOH HOH . E 4 HOH A 33 533 6 HOH HOH . E 4 HOH A 34 534 8 HOH HOH . E 4 HOH A 35 535 9 HOH HOH . E 4 HOH A 36 536 10 HOH HOH . E 4 HOH A 37 537 11 HOH HOH . E 4 HOH A 38 538 12 HOH HOH . E 4 HOH A 39 539 14 HOH HOH . E 4 HOH A 40 540 15 HOH HOH . E 4 HOH A 41 541 16 HOH HOH . E 4 HOH A 42 542 18 HOH HOH . E 4 HOH A 43 543 20 HOH HOH . E 4 HOH A 44 544 25 HOH HOH . E 4 HOH A 45 545 26 HOH HOH . E 4 HOH A 46 546 27 HOH HOH . E 4 HOH A 47 547 29 HOH HOH . E 4 HOH A 48 548 30 HOH HOH . E 4 HOH A 49 549 31 HOH HOH . E 4 HOH A 50 550 32 HOH HOH . E 4 HOH A 51 551 34 HOH HOH . E 4 HOH A 52 552 37 HOH HOH . E 4 HOH A 53 553 40 HOH HOH . E 4 HOH A 54 554 41 HOH HOH . E 4 HOH A 55 555 43 HOH HOH . E 4 HOH A 56 556 44 HOH HOH . E 4 HOH A 57 557 46 HOH HOH . E 4 HOH A 58 558 47 HOH HOH . E 4 HOH A 59 559 57 HOH HOH . E 4 HOH A 60 560 58 HOH HOH . E 4 HOH A 61 561 61 HOH HOH . E 4 HOH A 62 562 64 HOH HOH . E 4 HOH A 63 563 70 HOH HOH . E 4 HOH A 64 564 71 HOH HOH . E 4 HOH A 65 565 72 HOH HOH . E 4 HOH A 66 566 74 HOH HOH . E 4 HOH A 67 567 75 HOH HOH . E 4 HOH A 68 568 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 83.776 6.182 25.858 1 56.28 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 82.386 6.354 26.002 1 56.03 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 84.249 7.246 24.88 1 56.51 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 83.51 7.122 23.686 1 56.24 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 85.742 7.101 24.607 1 57.1 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 86.308 6.163 25.495 1 57.54 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . D 3 84.274 6.304 26.819 1 67.54 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . D 3 83.997 5.187 25.471 1 67.54 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . D 3 82.027 5.645 26.576 1 67.24 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . D 3 84.071 8.226 25.321 1 67.82 ? H2 GOL 403 A 1 HETATM 11 H H31 GOL . . . D 3 85.896 6.772 23.579 1 68.52 ? H31 GOL 403 A 1 HETATM 12 H H32 GOL . . . D 3 86.233 8.066 24.731 1 68.52 ? H32 GOL 403 A 1 HETATM 13 H HO3 GOL . . . D 3 87.285 6.21 25.44 1 69.04 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #