data_4WBQ # _model_server_result.job_id lCZgLyrK3gQX90siOd7b2g _model_server_result.datetime_utc '2024-11-19 10:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4WBQ # _exptl.entry_id 4WBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WBQ _cell.length_a 77.04 _cell.length_b 77.04 _cell.length_c 112.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 14 A ASP 339 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc2 A OD1 ASP 14 A ASP 339 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc3 A OD2 ASP 14 A ASP 339 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc4 A O LEU 15 A LEU 340 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc5 A OE2 GLU 16 A GLU 341 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc6 A O HIS 121 A HIS 446 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc7 A OD2 ASP 126 A ASP 451 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 C CA CA . A CA 601 1_555 G O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc9 C CA CA . A CA 601 1_555 G O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc10 C CA CA . A CA 601 1_555 G O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 C CA CA . A CA 601 1_555 G O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc12 D CA CA . A CA 602 1_555 G O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc13 D CA CA . A CA 602 1_555 G O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc14 B OD1 ASP 14 B ASP 339 1_555 E CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc15 B OD2 ASP 14 B ASP 339 1_555 E CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc16 B OD1 ASP 14 B ASP 339 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc17 B O LEU 15 B LEU 340 1_555 E CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc18 B OE2 GLU 16 B GLU 341 1_555 E CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc19 B O HIS 121 B HIS 446 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc20 B OD2 ASP 126 B ASP 451 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc21 E CA CA . B CA 601 1_555 H O HOH . B HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc22 E CA CA . B CA 601 1_555 H O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc23 E CA CA . B CA 601 1_555 H O HOH . B HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc24 F CA CA . B CA 602 1_555 H O HOH . B HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc25 F CA CA . B CA 602 1_555 H O HOH . B HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc26 F CA CA . B CA 602 1_555 H O HOH . B HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WBQ _atom_sites.fract_transf_matrix[1][1] 0.01298 _atom_sites.fract_transf_matrix[1][2] 0.007494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 601 1 CA CA . D 2 CA A 1 602 1 CA CA . E 2 CA B 1 601 1 CA CA . F 2 CA B 1 602 1 CA CA . G 3 HOH A 1 701 24 HOH HOH . G 3 HOH A 2 702 23 HOH HOH . G 3 HOH A 3 703 21 HOH HOH . G 3 HOH A 4 704 2 HOH HOH . G 3 HOH A 5 705 9 HOH HOH . G 3 HOH A 6 706 10 HOH HOH . G 3 HOH A 7 707 11 HOH HOH . G 3 HOH A 8 708 13 HOH HOH . G 3 HOH A 9 709 17 HOH HOH . G 3 HOH A 10 710 18 HOH HOH . G 3 HOH A 11 711 20 HOH HOH . G 3 HOH A 12 712 22 HOH HOH . G 3 HOH A 13 713 25 HOH HOH . G 3 HOH A 14 714 27 HOH HOH . G 3 HOH A 15 715 29 HOH HOH . G 3 HOH A 16 716 33 HOH HOH . G 3 HOH A 17 717 34 HOH HOH . H 3 HOH B 1 701 1 HOH HOH . H 3 HOH B 2 702 3 HOH HOH . H 3 HOH B 3 703 4 HOH HOH . H 3 HOH B 4 704 5 HOH HOH . H 3 HOH B 5 705 6 HOH HOH . H 3 HOH B 6 706 7 HOH HOH . H 3 HOH B 7 707 8 HOH HOH . H 3 HOH B 8 708 12 HOH HOH . H 3 HOH B 9 709 14 HOH HOH . H 3 HOH B 10 710 15 HOH HOH . H 3 HOH B 11 711 16 HOH HOH . H 3 HOH B 12 712 19 HOH HOH . H 3 HOH B 13 713 28 HOH HOH . H 3 HOH B 14 714 31 HOH HOH . H 3 HOH B 15 715 35 HOH HOH . H 3 HOH B 16 716 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.935 _atom_site.Cartn_y 2.864 _atom_site.Cartn_z 4.16 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #