data_4WC0 # _model_server_result.job_id l3YNc-QiNBCsvvOiShc38w _model_server_result.datetime_utc '2024-10-18 18:18:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4WC0 # _exptl.entry_id 4WC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.84 _cell.angle_gamma 90 _cell.entry_id 4WC0 _cell.length_a 57.71 _cell.length_b 109.06 _cell.length_c 85.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G ATP . A ATP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc2 C O2B ATP . A ATP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 E O1B ATP . B ATP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4WC0 _atom_sites.fract_transf_matrix[1][1] 0.017328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 401 502 ATP ATP . D 3 MG A 1 402 601 MG MG . E 2 ATP B 1 401 502 ATP ATP . F 3 MG B 1 402 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 7.501 18.256 -67.741 1 96.49 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . C 2 8.52 17.632 -68.662 1 109.74 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . C 2 7.901 19.601 -67.187 1 61.9 1 O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . C 2 6.932 17.31 -66.712 1 110.17 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . C 2 5.551 17.449 -69.597 1 72.67 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . C 2 5.868 17.728 -71.046 1 55.63 1 O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . C 2 5.869 16.095 -69.011 1 88.35 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . C 2 6.253 18.592 -68.703 1 90.86 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . C 2 3.054 16.9 -68.394 1 78.17 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . C 2 1.919 17.81 -67.993 1 79.46 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . C 2 3.92 16.257 -67.336 1 99.54 1 O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . C 2 3.99 17.775 -69.373 1 56.56 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . C 2 2.427 15.746 -69.329 1 56.08 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . C 2 3.138 15.183 -70.427 1 66.36 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . C 2 2.273 15.225 -71.675 1 68.74 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . C 2 0.891 15.306 -71.323 1 54.77 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . C 2 2.585 16.456 -72.503 1 95.07 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . C 2 3.446 16.114 -73.589 1 113 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . C 2 1.244 16.939 -73.011 1 91.71 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . C 2 1.095 16.57 -74.383 1 104.99 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . C 2 0.198 16.217 -72.18 1 66.1 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . C 2 -0.52 17.225 -71.364 1 55.06 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . C 2 -0.186 17.589 -70.113 1 55.92 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . C 2 -1.031 18.538 -69.636 1 79 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . C 2 -1.932 18.8 -70.601 1 68.37 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . C 2 -3.101 19.7 -70.752 1 56.83 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . C 2 -3.483 20.53 -69.751 1 78.91 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . C 2 -3.773 19.666 -71.923 1 55.42 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . C 2 -3.402 18.843 -72.921 1 79.64 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . C 2 -2.354 18.001 -72.855 1 69.74 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . C 2 -1.591 17.932 -71.739 1 58.71 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #