data_4WC1 # _model_server_result.job_id tSpKVnX7RXo_eKpL2IFpag _model_server_result.datetime_utc '2024-10-18 18:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4WC1 # _exptl.entry_id 4WC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.08 _cell.angle_gamma 90 _cell.entry_id 4WC1 _cell.length_a 58.4 _cell.length_b 108.09 _cell.length_c 84.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 4WC1 _atom_sites.fract_transf_matrix[1][1] 0.017123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00626 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CTP A 1 401 502 CTP CTP . D 2 CTP B 1 501 501 CTP CTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . D 2 -0.792 37.397 -7.792 1 58.67 ? N1 CTP 501 B 1 HETATM 2 C C2 CTP . . . D 2 -1.887 36.91 -7.1 1 67.22 ? C2 CTP 501 B 1 HETATM 3 N N3 CTP . . . D 2 -2.768 36.024 -7.695 1 75.61 ? N3 CTP 501 B 1 HETATM 4 C C4 CTP . . . D 2 -2.549 35.61 -8.995 1 82.02 ? C4 CTP 501 B 1 HETATM 5 C C5 CTP . . . D 2 -1.436 36.074 -9.678 1 75.14 ? C5 CTP 501 B 1 HETATM 6 C C6 CTP . . . D 2 -0.673 37.088 -9.118 1 62.79 ? C6 CTP 501 B 1 HETATM 7 O O2 CTP . . . D 2 -2.088 37.261 -5.944 1 66.86 ? O2 CTP 501 B 1 HETATM 8 N N4 CTP . . . D 2 -3.399 34.778 -9.594 1 96.8 ? N4 CTP 501 B 1 HETATM 9 C C1' CTP . . . D 2 0.196 38.279 -7.12 1 60.64 ? C1' CTP 501 B 1 HETATM 10 C C2' CTP . . . D 2 1.454 37.505 -6.755 1 89.23 ? C2' CTP 501 B 1 HETATM 11 O O2' CTP . . . D 2 1.913 37.971 -5.51 1 102.2 ? O2' CTP 501 B 1 HETATM 12 C C3' CTP . . . D 2 2.463 37.838 -7.843 1 85.28 ? C3' CTP 501 B 1 HETATM 13 C C4' CTP . . . D 2 1.954 39.128 -8.455 1 81.42 ? C4' CTP 501 B 1 HETATM 14 O O4' CTP . . . D 2 0.617 39.305 -8.002 1 71.8 ? O4' CTP 501 B 1 HETATM 15 O O3' CTP . . . D 2 3.786 37.987 -7.376 1 63.69 ? O3' CTP 501 B 1 HETATM 16 C C5' CTP . . . D 2 1.979 39 -9.97 1 90.08 ? C5' CTP 501 B 1 HETATM 17 O O5' CTP . . . D 2 2.981 39.795 -10.561 1 89.75 ? O5' CTP 501 B 1 HETATM 18 P PA CTP . . . D 2 3.902 39.088 -11.669 1 101.06 ? PA CTP 501 B 1 HETATM 19 O O1A CTP . . . D 2 3.165 38.976 -12.979 1 104.94 ? O1A CTP 501 B 1 HETATM 20 O O2A CTP . . . D 2 5.221 39.821 -11.808 1 87.41 1 O2A CTP 501 B 1 HETATM 21 O O3A CTP . . . D 2 4.075 37.64 -10.987 1 54.53 ? O3A CTP 501 B 1 HETATM 22 P PB CTP . . . D 2 5.499 37.133 -10.446 1 81.96 ? PB CTP 501 B 1 HETATM 23 O O1B CTP . . . D 2 6.241 38.312 -9.863 1 60.47 1 O1B CTP 501 B 1 HETATM 24 O O2B CTP . . . D 2 5.322 36.061 -9.396 1 75.61 ? O2B CTP 501 B 1 HETATM 25 O O3B CTP . . . D 2 6.206 36.601 -11.804 1 73.7 ? O3B CTP 501 B 1 HETATM 26 P PG CTP . . . D 2 7.712 36.023 -11.917 1 116.58 ? PG CTP 501 B 1 HETATM 27 O O1G CTP . . . D 2 8.159 36.057 -13.356 1 118.67 ? O1G CTP 501 B 1 HETATM 28 O O2G CTP . . . D 2 7.769 34.594 -11.442 1 123.79 1 O2G CTP 501 B 1 HETATM 29 O O3G CTP . . . D 2 8.673 36.862 -11.114 1 122.14 ? O3G CTP 501 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #