data_4WCA # _model_server_result.job_id g7KoZYcFsPtPQiNysG4FZw _model_server_result.datetime_utc '2024-10-19 21:32:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4WCA # _exptl.entry_id 4WCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WCA _cell.length_a 40.43 _cell.length_b 47.64 _cell.length_c 107.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 156 A GLY 313 1_555 A N CSX 157 A CSX 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSX 157 A CSX 314 1_555 A N ALA 158 A ALA 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4WCA _atom_sites.fract_transf_matrix[1][1] 0.024734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 401 1 CIT CIT . C 3 1PE A 1 402 1 1PE 1PE . D 3 1PE A 1 403 1 1PE 1PE . E 3 1PE A 1 404 1 1PE 1PE . F 4 CL A 1 405 1 CL CL . G 3 1PE A 1 406 1 1PE 1PE . H 3 1PE A 1 407 1 1PE 1PE . I 3 1PE A 1 408 1 1PE 1PE . J 5 HOH A 1 501 148 HOH HOH . J 5 HOH A 2 502 80 HOH HOH . J 5 HOH A 3 503 39 HOH HOH . J 5 HOH A 4 504 12 HOH HOH . J 5 HOH A 5 505 139 HOH HOH . J 5 HOH A 6 506 31 HOH HOH . J 5 HOH A 7 507 36 HOH HOH . J 5 HOH A 8 508 34 HOH HOH . J 5 HOH A 9 509 63 HOH HOH . J 5 HOH A 10 510 115 HOH HOH . J 5 HOH A 11 511 38 HOH HOH . J 5 HOH A 12 512 117 HOH HOH . J 5 HOH A 13 513 8 HOH HOH . J 5 HOH A 14 514 69 HOH HOH . J 5 HOH A 15 515 32 HOH HOH . J 5 HOH A 16 516 118 HOH HOH . J 5 HOH A 17 517 53 HOH HOH . J 5 HOH A 18 518 25 HOH HOH . J 5 HOH A 19 519 146 HOH HOH . J 5 HOH A 20 520 92 HOH HOH . J 5 HOH A 21 521 22 HOH HOH . J 5 HOH A 22 522 101 HOH HOH . J 5 HOH A 23 523 58 HOH HOH . J 5 HOH A 24 524 26 HOH HOH . J 5 HOH A 25 525 147 HOH HOH . J 5 HOH A 26 526 143 HOH HOH . J 5 HOH A 27 527 121 HOH HOH . J 5 HOH A 28 528 112 HOH HOH . J 5 HOH A 29 529 126 HOH HOH . J 5 HOH A 30 530 103 HOH HOH . J 5 HOH A 31 531 74 HOH HOH . J 5 HOH A 32 532 123 HOH HOH . J 5 HOH A 33 533 134 HOH HOH . J 5 HOH A 34 534 65 HOH HOH . J 5 HOH A 35 535 124 HOH HOH . J 5 HOH A 36 536 9 HOH HOH . J 5 HOH A 37 537 141 HOH HOH . J 5 HOH A 38 538 30 HOH HOH . J 5 HOH A 39 539 57 HOH HOH . J 5 HOH A 40 540 104 HOH HOH . J 5 HOH A 41 541 94 HOH HOH . J 5 HOH A 42 542 109 HOH HOH . J 5 HOH A 43 543 82 HOH HOH . J 5 HOH A 44 544 60 HOH HOH . J 5 HOH A 45 545 95 HOH HOH . J 5 HOH A 46 546 6 HOH HOH . J 5 HOH A 47 547 111 HOH HOH . J 5 HOH A 48 548 1 HOH HOH . J 5 HOH A 49 549 2 HOH HOH . J 5 HOH A 50 550 3 HOH HOH . J 5 HOH A 51 551 4 HOH HOH . J 5 HOH A 52 552 5 HOH HOH . J 5 HOH A 53 553 7 HOH HOH . J 5 HOH A 54 554 10 HOH HOH . J 5 HOH A 55 555 11 HOH HOH . J 5 HOH A 56 556 13 HOH HOH . J 5 HOH A 57 557 14 HOH HOH . J 5 HOH A 58 558 15 HOH HOH . J 5 HOH A 59 559 16 HOH HOH . J 5 HOH A 60 560 17 HOH HOH . J 5 HOH A 61 561 18 HOH HOH . J 5 HOH A 62 562 20 HOH HOH . J 5 HOH A 63 563 21 HOH HOH . J 5 HOH A 64 564 23 HOH HOH . J 5 HOH A 65 565 24 HOH HOH . J 5 HOH A 66 566 27 HOH HOH . J 5 HOH A 67 567 28 HOH HOH . J 5 HOH A 68 568 29 HOH HOH . J 5 HOH A 69 569 33 HOH HOH . J 5 HOH A 70 570 35 HOH HOH . J 5 HOH A 71 571 37 HOH HOH . J 5 HOH A 72 572 40 HOH HOH . J 5 HOH A 73 573 41 HOH HOH . J 5 HOH A 74 574 42 HOH HOH . J 5 HOH A 75 575 43 HOH HOH . J 5 HOH A 76 576 44 HOH HOH . J 5 HOH A 77 577 45 HOH HOH . J 5 HOH A 78 578 46 HOH HOH . J 5 HOH A 79 579 47 HOH HOH . J 5 HOH A 80 580 48 HOH HOH . J 5 HOH A 81 581 49 HOH HOH . J 5 HOH A 82 582 50 HOH HOH . J 5 HOH A 83 583 51 HOH HOH . J 5 HOH A 84 584 52 HOH HOH . J 5 HOH A 85 585 54 HOH HOH . J 5 HOH A 86 586 55 HOH HOH . J 5 HOH A 87 587 56 HOH HOH . J 5 HOH A 88 588 59 HOH HOH . J 5 HOH A 89 589 61 HOH HOH . J 5 HOH A 90 590 62 HOH HOH . J 5 HOH A 91 591 64 HOH HOH . J 5 HOH A 92 592 66 HOH HOH . J 5 HOH A 93 593 67 HOH HOH . J 5 HOH A 94 594 68 HOH HOH . J 5 HOH A 95 595 70 HOH HOH . J 5 HOH A 96 596 71 HOH HOH . J 5 HOH A 97 597 72 HOH HOH . J 5 HOH A 98 598 73 HOH HOH . J 5 HOH A 99 599 75 HOH HOH . J 5 HOH A 100 600 76 HOH HOH . J 5 HOH A 101 601 77 HOH HOH . J 5 HOH A 102 602 78 HOH HOH . J 5 HOH A 103 603 79 HOH HOH . J 5 HOH A 104 604 81 HOH HOH . J 5 HOH A 105 605 83 HOH HOH . J 5 HOH A 106 606 84 HOH HOH . J 5 HOH A 107 607 85 HOH HOH . J 5 HOH A 108 608 86 HOH HOH . J 5 HOH A 109 609 87 HOH HOH . J 5 HOH A 110 610 88 HOH HOH . J 5 HOH A 111 611 89 HOH HOH . J 5 HOH A 112 612 90 HOH HOH . J 5 HOH A 113 613 93 HOH HOH . J 5 HOH A 114 614 96 HOH HOH . J 5 HOH A 115 615 100 HOH HOH . J 5 HOH A 116 616 102 HOH HOH . J 5 HOH A 117 617 105 HOH HOH . J 5 HOH A 118 618 106 HOH HOH . J 5 HOH A 119 619 107 HOH HOH . J 5 HOH A 120 620 110 HOH HOH . J 5 HOH A 121 621 113 HOH HOH . J 5 HOH A 122 622 114 HOH HOH . J 5 HOH A 123 623 116 HOH HOH . J 5 HOH A 124 624 120 HOH HOH . J 5 HOH A 125 625 122 HOH HOH . J 5 HOH A 126 626 127 HOH HOH . J 5 HOH A 127 627 128 HOH HOH . J 5 HOH A 128 628 129 HOH HOH . J 5 HOH A 129 629 130 HOH HOH . J 5 HOH A 130 630 131 HOH HOH . J 5 HOH A 131 631 132 HOH HOH . J 5 HOH A 132 632 133 HOH HOH . J 5 HOH A 133 633 136 HOH HOH . J 5 HOH A 134 634 137 HOH HOH . J 5 HOH A 135 635 142 HOH HOH . J 5 HOH A 136 636 144 HOH HOH . J 5 HOH A 137 637 145 HOH HOH . J 5 HOH A 138 638 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . H 3 9.44 11.091 -7.092 1 59.89 ? OH2 1PE 407 A 1 HETATM 2 C C12 1PE . . . H 3 8.289 10.759 -7.876 1 35.75 ? C12 1PE 407 A 1 HETATM 3 C C22 1PE . . . H 3 7.141 11.71 -7.556 1 33.18 ? C22 1PE 407 A 1 HETATM 4 O OH3 1PE . . . H 3 7.507 13.026 -7.946 1 28.49 ? OH3 1PE 407 A 1 HETATM 5 C C13 1PE . . . H 3 6.91 15.355 -8.157 1 36.72 ? C13 1PE 407 A 1 HETATM 6 C C23 1PE . . . H 3 6.494 13.981 -7.645 1 32.32 ? C23 1PE 407 A 1 HETATM 7 O OH4 1PE . . . H 3 8.252 15.629 -7.763 1 40.28 ? OH4 1PE 407 A 1 HETATM 8 H HO2 1PE . . . H 3 10.161 10.483 -7.304 1 71.86 ? HO2 1PE 407 A 1 HETATM 9 H H121 1PE . . . H 3 7.985 9.732 -7.664 1 42.9 ? H121 1PE 407 A 1 HETATM 10 H H122 1PE . . . H 3 8.537 10.827 -8.937 1 42.9 ? H122 1PE 407 A 1 HETATM 11 H H221 1PE . . . H 3 6.927 11.686 -6.486 1 39.81 ? H221 1PE 407 A 1 HETATM 12 H H222 1PE . . . H 3 6.242 11.4 -8.093 1 39.81 ? H222 1PE 407 A 1 HETATM 13 H H131 1PE . . . H 3 6.244 16.118 -7.749 1 44.06 ? H131 1PE 407 A 1 HETATM 14 H H132 1PE . . . H 3 6.833 15.382 -9.246 1 44.06 ? H132 1PE 407 A 1 HETATM 15 H H231 1PE . . . H 3 6.337 14.023 -6.565 1 38.78 ? H231 1PE 407 A 1 HETATM 16 H H232 1PE . . . H 3 5.555 13.682 -8.114 1 38.78 ? H232 1PE 407 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 16 #