data_4WCC # _model_server_result.job_id XpIL9CZArGmO1neGUMxWVQ _model_server_result.datetime_utc '2025-02-18 04:33:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WCC # _exptl.entry_id 4WCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WCC _cell.length_a 40.79 _cell.length_b 46.51 _cell.length_c 106.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id 2AM _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2AM doub 1 n n P O2P 2AM sing 2 n n P O3P 2AM sing 3 n n P O2' 2AM sing 4 n n O2P HOP2 2AM sing 5 n n O3P HOP3 2AM sing 6 n n C5' O5' 2AM sing 7 n n C5' C4' 2AM sing 8 n n C5' "H5'1" 2AM sing 9 n n C5' "H5'2" 2AM sing 10 n n O5' HO5' 2AM sing 11 n n C4' O4' 2AM sing 12 n n C4' C3' 2AM sing 13 n n C4' H4' 2AM sing 14 n n O4' C1' 2AM sing 15 n n C3' O3' 2AM sing 16 n n C3' C2' 2AM sing 17 n n C3' H3' 2AM sing 18 n n O3' HO3' 2AM sing 19 n n C2' O2' 2AM sing 20 n n C2' C1' 2AM sing 21 n n C2' H2' 2AM sing 22 n n C1' N9 2AM sing 23 n n C1' H1' 2AM sing 24 n n N9 C8 2AM sing 25 n y N9 C4 2AM sing 26 n y C8 N7 2AM doub 27 n y C8 H8 2AM sing 28 n n N7 C5 2AM sing 29 n y C5 C6 2AM sing 30 n y C5 C4 2AM doub 31 n y C6 N6 2AM sing 32 n n C6 N1 2AM doub 33 n y N6 HN61 2AM sing 34 n n N6 HN62 2AM sing 35 n n N1 C2 2AM sing 36 n y C2 N3 2AM doub 37 n y C2 H2 2AM sing 38 n n N3 C4 2AM sing 39 n y # _atom_sites.entry_id 4WCC _atom_sites.fract_transf_matrix[1][1] 0.024516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AM A 1 401 1 2AM 2AM . C 3 CL A 1 402 1 CL CL . D 3 CL A 1 403 1 CL CL . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 3 HOH HOH . E 4 HOH A 3 503 5 HOH HOH . E 4 HOH A 4 504 7 HOH HOH . E 4 HOH A 5 505 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2AM . . . B 2 -5.949 5.307 -21.189 0.7 52.52 ? P 2AM 401 A 1 HETATM 2 O O1P 2AM . . . B 2 -4.607 5.231 -21.96 0.7 60.41 ? O1P 2AM 401 A 1 HETATM 3 O O2P 2AM . . . B 2 -6.156 4.032 -20.379 0.7 47.64 ? O2P 2AM 401 A 1 HETATM 4 O O3P 2AM . . . B 2 -5.874 6.472 -20.227 0.7 47.85 ? O3P 2AM 401 A 1 HETATM 5 C C5' 2AM . . . B 2 -5.809 4.418 -26.751 0.7 45.15 ? C5' 2AM 401 A 1 HETATM 6 O O5' 2AM . . . B 2 -4.46 4.772 -26.533 0.7 45.32 ? O5' 2AM 401 A 1 HETATM 7 C C4' 2AM . . . B 2 -6.692 5.274 -25.788 0.7 52.6 ? C4' 2AM 401 A 1 HETATM 8 O O4' 2AM . . . B 2 -7.889 4.82 -25.681 0.7 54.34 ? O4' 2AM 401 A 1 HETATM 9 C C3' 2AM . . . B 2 -6.123 5.184 -24.348 0.7 50.02 ? C3' 2AM 401 A 1 HETATM 10 O O3' 2AM . . . B 2 -5.661 6.397 -23.968 0.7 49.15 ? O3' 2AM 401 A 1 HETATM 11 C C2' 2AM . . . B 2 -7.283 4.758 -23.444 0.7 48.42 ? C2' 2AM 401 A 1 HETATM 12 O O2' 2AM . . . B 2 -7.182 5.536 -22.18 0.7 46.68 ? O2' 2AM 401 A 1 HETATM 13 C C1' 2AM . . . B 2 -8.335 5.073 -24.16 0.7 49.52 ? C1' 2AM 401 A 1 HETATM 14 N N9 2AM . . . B 2 -9.502 4.306 -23.887 0.7 51.18 ? N9 2AM 401 A 1 HETATM 15 C C8 2AM . . . B 2 -10.437 4.503 -22.946 0.7 51.21 ? C8 2AM 401 A 1 HETATM 16 N N7 2AM . . . B 2 -11.395 3.528 -23.074 0.7 51.88 ? N7 2AM 401 A 1 HETATM 17 C C5 2AM . . . B 2 -11.042 2.714 -24.133 0.7 52.59 ? C5 2AM 401 A 1 HETATM 18 C C6 2AM . . . B 2 -11.653 1.577 -24.704 0.7 53.05 ? C6 2AM 401 A 1 HETATM 19 N N6 2AM . . . B 2 -12.852 0.825 -24.423 0.7 53.55 ? N6 2AM 401 A 1 HETATM 20 N N1 2AM . . . B 2 -11.086 0.953 -25.763 0.7 53.06 ? N1 2AM 401 A 1 HETATM 21 C C2 2AM . . . B 2 -9.926 1.42 -26.28 0.7 52.92 ? C2 2AM 401 A 1 HETATM 22 N N3 2AM . . . B 2 -9.322 2.532 -25.725 0.7 52.57 ? N3 2AM 401 A 1 HETATM 23 C C4 2AM . . . B 2 -9.892 3.183 -24.64 0.7 52.02 ? C4 2AM 401 A 1 HETATM 24 H "H5'1" 2AM . . . B 2 -6.059 4.608 -27.7 0.7 54.18 ? "H5'1" 2AM 401 A 1 HETATM 25 H "H5'2" 2AM . . . B 2 -5.941 3.449 -26.554 0.7 54.18 ? "H5'2" 2AM 401 A 1 HETATM 26 H HO5' 2AM . . . B 2 -4.012 4.078 -26.339 0.7 54.39 ? HO5' 2AM 401 A 1 HETATM 27 H H4' 2AM . . . B 2 -6.71 6.212 -26.087 0.7 63.12 ? H4' 2AM 401 A 1 HETATM 28 H H3' 2AM . . . B 2 -5.397 4.517 -24.31 0.7 60.03 ? H3' 2AM 401 A 1 HETATM 29 H HO3' 2AM . . . B 2 -4.828 6.52 -24.298 0.7 58.98 ? HO3' 2AM 401 A 1 HETATM 30 H H2' 2AM . . . B 2 -7.253 3.764 -23.261 0.7 58.1 ? H2' 2AM 401 A 1 HETATM 31 H H1' 2AM . . . B 2 -8.527 5.974 -24.042 0.7 59.43 ? H1' 2AM 401 A 1 HETATM 32 H H8 2AM . . . B 2 -10.431 5.227 -22.265 0.7 61.45 ? H8 2AM 401 A 1 HETATM 33 H HN61 2AM . . . B 2 -13.118 0.7 -23.564 0.7 64.26 ? HN61 2AM 401 A 1 HETATM 34 H HN62 2AM . . . B 2 -13.357 0.465 -25.129 0.7 64.26 ? HN62 2AM 401 A 1 HETATM 35 H H2 2AM . . . B 2 -9.506 0.959 -27.062 0.7 63.5 ? H2 2AM 401 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #