data_4WD0
#
_model_server_result.job_id            TSeY-3YWsSFaIiN2Q--L4w 
_model_server_result.datetime_utc      '2024-11-13 14:55:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wd0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    4WD0 
#
_exptl.entry_id    4WD0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WD0 
_cell.length_a            93.974 
_cell.length_b            93.974 
_cell.length_c            45.433 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WD0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 
6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4WD0 
_atom_sites.fract_transf_matrix[1][1]    0.010641 
_atom_sites.fract_transf_matrix[1][2]    0.006144 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 301 1 CL CL . 
C 2 CL A 1 302 2 CL CL . 
D 3 GOL A 1 303 2 GOL GOL . 
E 4 TRS A 1 304 1 TRS TRS . 
F 5 HOH A 1 401 27 HOH HOH . 
F 5 HOH A 2 402 94 HOH HOH . 
F 5 HOH A 3 403 35 HOH HOH . 
F 5 HOH A 4 404 172 HOH HOH . 
F 5 HOH A 5 405 124 HOH HOH . 
F 5 HOH A 6 406 135 HOH HOH . 
F 5 HOH A 7 407 91 HOH HOH . 
F 5 HOH A 8 408 54 HOH HOH . 
F 5 HOH A 9 409 121 HOH HOH . 
F 5 HOH A 10 410 148 HOH HOH . 
F 5 HOH A 11 411 17 HOH HOH . 
F 5 HOH A 12 412 97 HOH HOH . 
F 5 HOH A 13 413 39 HOH HOH . 
F 5 HOH A 14 414 118 HOH HOH . 
F 5 HOH A 15 415 184 HOH HOH . 
F 5 HOH A 16 416 41 HOH HOH . 
F 5 HOH A 17 417 45 HOH HOH . 
F 5 HOH A 18 418 13 HOH HOH . 
F 5 HOH A 19 419 173 HOH HOH . 
F 5 HOH A 20 420 31 HOH HOH . 
F 5 HOH A 21 421 95 HOH HOH . 
F 5 HOH A 22 422 119 HOH HOH . 
F 5 HOH A 23 423 47 HOH HOH . 
F 5 HOH A 24 424 50 HOH HOH . 
F 5 HOH A 25 425 52 HOH HOH . 
F 5 HOH A 26 426 85 HOH HOH . 
F 5 HOH A 27 427 29 HOH HOH . 
F 5 HOH A 28 428 34 HOH HOH . 
F 5 HOH A 29 429 70 HOH HOH . 
F 5 HOH A 30 430 2 HOH HOH . 
F 5 HOH A 31 431 23 HOH HOH . 
F 5 HOH A 32 432 84 HOH HOH . 
F 5 HOH A 33 433 145 HOH HOH . 
F 5 HOH A 34 434 190 HOH HOH . 
F 5 HOH A 35 435 200 HOH HOH . 
F 5 HOH A 36 436 192 HOH HOH . 
F 5 HOH A 37 437 30 HOH HOH . 
F 5 HOH A 38 438 20 HOH HOH . 
F 5 HOH A 39 439 195 HOH HOH . 
F 5 HOH A 40 440 205 HOH HOH . 
F 5 HOH A 41 441 28 HOH HOH . 
F 5 HOH A 42 442 15 HOH HOH . 
F 5 HOH A 43 443 106 HOH HOH . 
F 5 HOH A 44 444 43 HOH HOH . 
F 5 HOH A 45 445 36 HOH HOH . 
F 5 HOH A 46 446 16 HOH HOH . 
F 5 HOH A 47 447 127 HOH HOH . 
F 5 HOH A 48 448 116 HOH HOH . 
F 5 HOH A 49 449 10 HOH HOH . 
F 5 HOH A 50 450 157 HOH HOH . 
F 5 HOH A 51 451 146 HOH HOH . 
F 5 HOH A 52 452 171 HOH HOH . 
F 5 HOH A 53 453 182 HOH HOH . 
F 5 HOH A 54 454 9 HOH HOH . 
F 5 HOH A 55 455 5 HOH HOH . 
F 5 HOH A 56 456 25 HOH HOH . 
F 5 HOH A 57 457 141 HOH HOH . 
F 5 HOH A 58 458 71 HOH HOH . 
F 5 HOH A 59 459 107 HOH HOH . 
F 5 HOH A 60 460 100 HOH HOH . 
F 5 HOH A 61 461 188 HOH HOH . 
F 5 HOH A 62 462 142 HOH HOH . 
F 5 HOH A 63 463 165 HOH HOH . 
F 5 HOH A 64 464 193 HOH HOH . 
F 5 HOH A 65 465 136 HOH HOH . 
F 5 HOH A 66 466 79 HOH HOH . 
F 5 HOH A 67 467 33 HOH HOH . 
F 5 HOH A 68 468 103 HOH HOH . 
F 5 HOH A 69 469 167 HOH HOH . 
F 5 HOH A 70 470 12 HOH HOH . 
F 5 HOH A 71 471 8 HOH HOH . 
F 5 HOH A 72 472 78 HOH HOH . 
F 5 HOH A 73 473 174 HOH HOH . 
F 5 HOH A 74 474 149 HOH HOH . 
F 5 HOH A 75 475 112 HOH HOH . 
F 5 HOH A 76 476 48 HOH HOH . 
F 5 HOH A 77 477 49 HOH HOH . 
F 5 HOH A 78 478 109 HOH HOH . 
F 5 HOH A 79 479 202 HOH HOH . 
F 5 HOH A 80 480 126 HOH HOH . 
F 5 HOH A 81 481 68 HOH HOH . 
F 5 HOH A 82 482 115 HOH HOH . 
F 5 HOH A 83 483 196 HOH HOH . 
F 5 HOH A 84 484 153 HOH HOH . 
F 5 HOH A 85 485 108 HOH HOH . 
F 5 HOH A 86 486 189 HOH HOH . 
F 5 HOH A 87 487 178 HOH HOH . 
F 5 HOH A 88 488 152 HOH HOH . 
F 5 HOH A 89 489 168 HOH HOH . 
F 5 HOH A 90 490 125 HOH HOH . 
F 5 HOH A 91 491 83 HOH HOH . 
F 5 HOH A 92 492 62 HOH HOH . 
F 5 HOH A 93 493 120 HOH HOH . 
F 5 HOH A 94 494 161 HOH HOH . 
F 5 HOH A 95 495 176 HOH HOH . 
F 5 HOH A 96 496 56 HOH HOH . 
F 5 HOH A 97 497 88 HOH HOH . 
F 5 HOH A 98 498 96 HOH HOH . 
F 5 HOH A 99 499 117 HOH HOH . 
F 5 HOH A 100 500 128 HOH HOH . 
F 5 HOH A 101 501 129 HOH HOH . 
F 5 HOH A 102 502 151 HOH HOH . 
F 5 HOH A 103 503 169 HOH HOH . 
F 5 HOH A 104 504 114 HOH HOH . 
F 5 HOH A 105 505 132 HOH HOH . 
F 5 HOH A 106 506 150 HOH HOH . 
F 5 HOH A 107 507 81 HOH HOH . 
F 5 HOH A 108 508 204 HOH HOH . 
F 5 HOH A 109 509 90 HOH HOH . 
F 5 HOH A 110 510 133 HOH HOH . 
F 5 HOH A 111 511 134 HOH HOH . 
F 5 HOH A 112 512 1 HOH HOH . 
F 5 HOH A 113 513 3 HOH HOH . 
F 5 HOH A 114 514 4 HOH HOH . 
F 5 HOH A 115 515 6 HOH HOH . 
F 5 HOH A 116 516 7 HOH HOH . 
F 5 HOH A 117 517 11 HOH HOH . 
F 5 HOH A 118 518 14 HOH HOH . 
F 5 HOH A 119 519 18 HOH HOH . 
F 5 HOH A 120 520 19 HOH HOH . 
F 5 HOH A 121 521 21 HOH HOH . 
F 5 HOH A 122 522 22 HOH HOH . 
F 5 HOH A 123 523 24 HOH HOH . 
F 5 HOH A 124 524 26 HOH HOH . 
F 5 HOH A 125 525 32 HOH HOH . 
F 5 HOH A 126 526 37 HOH HOH . 
F 5 HOH A 127 527 38 HOH HOH . 
F 5 HOH A 128 528 40 HOH HOH . 
F 5 HOH A 129 529 42 HOH HOH . 
F 5 HOH A 130 530 44 HOH HOH . 
F 5 HOH A 131 531 46 HOH HOH . 
F 5 HOH A 132 532 51 HOH HOH . 
F 5 HOH A 133 533 53 HOH HOH . 
F 5 HOH A 134 534 55 HOH HOH . 
F 5 HOH A 135 535 57 HOH HOH . 
F 5 HOH A 136 536 58 HOH HOH . 
F 5 HOH A 137 537 59 HOH HOH . 
F 5 HOH A 138 538 60 HOH HOH . 
F 5 HOH A 139 539 61 HOH HOH . 
F 5 HOH A 140 540 63 HOH HOH . 
F 5 HOH A 141 541 64 HOH HOH . 
F 5 HOH A 142 542 65 HOH HOH . 
F 5 HOH A 143 543 66 HOH HOH . 
F 5 HOH A 144 544 67 HOH HOH . 
F 5 HOH A 145 545 69 HOH HOH . 
F 5 HOH A 146 546 72 HOH HOH . 
F 5 HOH A 147 547 73 HOH HOH . 
F 5 HOH A 148 548 74 HOH HOH . 
F 5 HOH A 149 549 75 HOH HOH . 
F 5 HOH A 150 550 76 HOH HOH . 
F 5 HOH A 151 551 77 HOH HOH . 
F 5 HOH A 152 552 80 HOH HOH . 
F 5 HOH A 153 553 82 HOH HOH . 
F 5 HOH A 154 554 86 HOH HOH . 
F 5 HOH A 155 555 87 HOH HOH . 
F 5 HOH A 156 556 89 HOH HOH . 
F 5 HOH A 157 557 92 HOH HOH . 
F 5 HOH A 158 558 93 HOH HOH . 
F 5 HOH A 159 559 98 HOH HOH . 
F 5 HOH A 160 560 99 HOH HOH . 
F 5 HOH A 161 561 101 HOH HOH . 
F 5 HOH A 162 562 102 HOH HOH . 
F 5 HOH A 163 563 104 HOH HOH . 
F 5 HOH A 164 564 105 HOH HOH . 
F 5 HOH A 165 565 110 HOH HOH . 
F 5 HOH A 166 566 111 HOH HOH . 
F 5 HOH A 167 567 113 HOH HOH . 
F 5 HOH A 168 568 122 HOH HOH . 
F 5 HOH A 169 569 123 HOH HOH . 
F 5 HOH A 170 570 130 HOH HOH . 
F 5 HOH A 171 571 131 HOH HOH . 
F 5 HOH A 172 572 137 HOH HOH . 
F 5 HOH A 173 573 138 HOH HOH . 
F 5 HOH A 174 574 139 HOH HOH . 
F 5 HOH A 175 575 140 HOH HOH . 
F 5 HOH A 176 576 143 HOH HOH . 
F 5 HOH A 177 577 144 HOH HOH . 
F 5 HOH A 178 578 147 HOH HOH . 
F 5 HOH A 179 579 154 HOH HOH . 
F 5 HOH A 180 580 155 HOH HOH . 
F 5 HOH A 181 581 156 HOH HOH . 
F 5 HOH A 182 582 158 HOH HOH . 
F 5 HOH A 183 583 159 HOH HOH . 
F 5 HOH A 184 584 160 HOH HOH . 
F 5 HOH A 185 585 162 HOH HOH . 
F 5 HOH A 186 586 163 HOH HOH . 
F 5 HOH A 187 587 164 HOH HOH . 
F 5 HOH A 188 588 166 HOH HOH . 
F 5 HOH A 189 589 170 HOH HOH . 
F 5 HOH A 190 590 175 HOH HOH . 
F 5 HOH A 191 591 177 HOH HOH . 
F 5 HOH A 192 592 179 HOH HOH . 
F 5 HOH A 193 593 180 HOH HOH . 
F 5 HOH A 194 594 181 HOH HOH . 
F 5 HOH A 195 595 183 HOH HOH . 
F 5 HOH A 196 596 185 HOH HOH . 
F 5 HOH A 197 597 186 HOH HOH . 
F 5 HOH A 198 598 187 HOH HOH . 
F 5 HOH A 199 599 191 HOH HOH . 
F 5 HOH A 200 600 194 HOH HOH . 
F 5 HOH A 201 601 197 HOH HOH . 
F 5 HOH A 202 602 198 HOH HOH . 
F 5 HOH A 203 603 199 HOH HOH . 
F 5 HOH A 204 604 201 HOH HOH . 
F 5 HOH A 205 605 203 HOH HOH . 
F 5 HOH A 206 606 206 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -26.381 24.611 -20.471 1 22.4 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 3 -26.38 23.161 -20.563 1 13.94 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 3 -25.366 25.282 -21.39 1 28.92 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 3 -25.08 26.558 -20.853 1 38.47 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 3 -25.906 25.447 -22.816 1 27.14 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 3 -24.822 25.885 -23.695 1 29.91 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#