data_4WD5 # _model_server_result.job_id d1SodAEer7a4Xt7xcGdFAg _model_server_result.datetime_utc '2025-02-20 11:16:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 4WD5 # _exptl.entry_id 4WD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-methyl-5-[2-oxo-9-(1H-pyrazol-4-yl)benzo[h][1,6]naphthyridin-1(2H)-yl]phenyl}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WD5 _cell.length_a 47.575 _cell.length_b 93.288 _cell.length_c 163.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,B,C,D,E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAR _struct_conn.ptnr2_label_comp_id 3LH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3LH _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.809 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H21 N5 O2' _chem_comp.formula_weight 423.467 _chem_comp.id 3LH _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-methyl-5-[2-oxo-9-(1H-pyrazol-4-yl)benzo[h][1,6]naphthyridin-1(2H)-yl]phenyl}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAY NAV 3LH sing 1 n y NAY CAO 3LH doub 2 n y NAV CAM 3LH sing 3 n y CAO CBC 3LH sing 4 n y CAG CAH 3LH doub 5 n y CAG CBA 3LH sing 6 n y CAA CBA 3LH sing 7 n n CAM CBC 3LH doub 8 n y CBC CBB 3LH sing 9 n n CAH CBD 3LH sing 10 n y CBA CBE 3LH doub 11 n y CAI CBB 3LH doub 12 n y CAI CAK 3LH sing 13 n y CBB CAQ 3LH sing 14 n y CAK CBH 3LH doub 15 n y CAQ CBI 3LH doub 16 n y CBH CBI 3LH sing 17 n y CBH NAW 3LH sing 18 n y CBI CBJ 3LH sing 19 n y CBD NBL 3LH sing 20 n n CBD CAP 3LH doub 21 n y CBE CAP 3LH sing 22 n y CBE NAX 3LH sing 23 n n NAW CAN 3LH doub 24 n y CBJ NBL 3LH sing 25 n n CBJ CBG 3LH doub 26 n y NBL CBF 3LH sing 27 n n CAN CBG 3LH sing 28 n y CBG CAL 3LH sing 29 n n NAX CAZ 3LH sing 30 n n CBF OAE 3LH doub 31 n n CBF CAJ 3LH sing 32 n n CAL CAJ 3LH doub 33 n n CAZ CAT 3LH sing 34 n n CAZ OAD 3LH doub 35 n n CAT CAR 3LH sing 36 n n CAR H1 3LH sing 37 n n CAR H2 3LH sing 38 n n CAR H3 3LH sing 39 n n CAT H4 3LH sing 40 n n CAT H5 3LH sing 41 n n NAX H6 3LH sing 42 n n CAP H7 3LH sing 43 n n CAA H8 3LH sing 44 n n CAA H9 3LH sing 45 n n CAA H10 3LH sing 46 n n CAG H11 3LH sing 47 n n CAH H12 3LH sing 48 n n CAQ H13 3LH sing 49 n n CAJ H14 3LH sing 50 n n CAL H15 3LH sing 51 n n CAN H16 3LH sing 52 n n CAK H17 3LH sing 53 n n CAI H18 3LH sing 54 n n CAM H19 3LH sing 55 n n NAV H20 3LH sing 56 n n CAO H21 3LH sing 57 n n # _atom_sites.entry_id 4WD5 _atom_sites.fract_transf_matrix[1][1] 0.021019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3LH A 1 1101 797 3LH DRG . D 3 CL B 1 1101 1 CL CL . E 4 HOH A 1 1201 15 HOH HOH . E 4 HOH A 2 1202 12 HOH HOH . E 4 HOH A 3 1203 2 HOH HOH . E 4 HOH A 4 1204 13 HOH HOH . E 4 HOH A 5 1205 14 HOH HOH . E 4 HOH A 6 1206 24 HOH HOH . E 4 HOH A 7 1207 3 HOH HOH . E 4 HOH A 8 1208 4 HOH HOH . E 4 HOH A 9 1209 5 HOH HOH . E 4 HOH A 10 1210 9 HOH HOH . E 4 HOH A 11 1211 10 HOH HOH . E 4 HOH A 12 1212 16 HOH HOH . E 4 HOH A 13 1213 18 HOH HOH . E 4 HOH A 14 1214 19 HOH HOH . E 4 HOH A 15 1215 20 HOH HOH . E 4 HOH A 16 1216 21 HOH HOH . F 4 HOH B 1 1201 11 HOH HOH . F 4 HOH B 2 1202 17 HOH HOH . F 4 HOH B 3 1203 1 HOH HOH . F 4 HOH B 4 1204 7 HOH HOH . F 4 HOH B 5 1205 22 HOH HOH . F 4 HOH B 6 1206 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAR 3LH . . . C 2 -17.24 20.591 35.809 1 75.56 ? CAR 3LH 1101 A 1 HETATM 2 C CAT 3LH . . . C 2 -17.471 20.322 34.346 1 82.94 ? CAT 3LH 1101 A 1 HETATM 3 C CAZ 3LH . . . C 2 -16.173 19.792 33.778 1 83.36 ? CAZ 3LH 1101 A 1 HETATM 4 O OAD 3LH . . . C 2 -15.168 19.699 34.471 1 85.92 ? OAD 3LH 1101 A 1 HETATM 5 N NAX 3LH . . . C 2 -16.263 19.439 32.506 1 87.78 ? NAX 3LH 1101 A 1 HETATM 6 C CBE 3LH . . . C 2 -15.219 18.945 31.876 1 83.46 ? CBE 3LH 1101 A 1 HETATM 7 C CAP 3LH . . . C 2 -14.356 18.015 32.421 1 80.25 ? CAP 3LH 1101 A 1 HETATM 8 C CBA 3LH . . . C 2 -15.07 19.41 30.591 1 82.12 ? CBA 3LH 1101 A 1 HETATM 9 C CAA 3LH . . . C 2 -15.973 20.335 30.096 1 79.42 ? CAA 3LH 1101 A 1 HETATM 10 C CAG 3LH . . . C 2 -14.029 18.964 29.81 1 77.97 ? CAG 3LH 1101 A 1 HETATM 11 C CAH 3LH . . . C 2 -13.167 18.035 30.342 1 73.93 ? CAH 3LH 1101 A 1 HETATM 12 C CBD 3LH . . . C 2 -13.298 17.586 31.641 1 78.88 ? CBD 3LH 1101 A 1 HETATM 13 N NBL 3LH . . . C 2 -12.434 16.674 32.082 1 82.18 ? NBL 3LH 1101 A 1 HETATM 14 C CBJ 3LH . . . C 2 -11.105 16.844 32.032 1 76.37 ? CBJ 3LH 1101 A 1 HETATM 15 C CBI 3LH . . . C 2 -10.503 18.002 31.557 1 73.63 ? CBI 3LH 1101 A 1 HETATM 16 C CAQ 3LH . . . C 2 -11.26 19.054 31.097 1 71.97 ? CAQ 3LH 1101 A 1 HETATM 17 C CBF 3LH . . . C 2 -12.962 15.538 32.538 1 81.31 ? CBF 3LH 1101 A 1 HETATM 18 O OAE 3LH . . . C 2 -14.178 15.414 32.559 1 86.22 ? OAE 3LH 1101 A 1 HETATM 19 C CAJ 3LH . . . C 2 -12.184 14.499 32.994 1 72.68 ? CAJ 3LH 1101 A 1 HETATM 20 C CAL 3LH . . . C 2 -10.816 14.651 32.964 1 71.41 ? CAL 3LH 1101 A 1 HETATM 21 C CBG 3LH . . . C 2 -10.288 15.83 32.483 1 71.99 ? CBG 3LH 1101 A 1 HETATM 22 C CAN 3LH . . . C 2 -8.921 15.978 32.445 1 76.63 ? CAN 3LH 1101 A 1 HETATM 23 N NAW 3LH . . . C 2 -8.352 17.146 31.972 1 75.82 ? NAW 3LH 1101 A 1 HETATM 24 C CBH 3LH . . . C 2 -9.129 18.125 31.538 1 69.8 ? CBH 3LH 1101 A 1 HETATM 25 C CAK 3LH . . . C 2 -8.529 19.27 31.065 1 65.16 ? CAK 3LH 1101 A 1 HETATM 26 C CAI 3LH . . . C 2 -9.294 20.317 30.603 1 64.45 ? CAI 3LH 1101 A 1 HETATM 27 C CBB 3LH . . . C 2 -10.662 20.193 30.617 1 68.04 ? CBB 3LH 1101 A 1 HETATM 28 C CBC 3LH . . . C 2 -11.409 21.182 30.187 1 72.52 ? CBC 3LH 1101 A 1 HETATM 29 C CAM 3LH . . . C 2 -12.719 21.17 30.115 1 77.7 ? CAM 3LH 1101 A 1 HETATM 30 N NAV 3LH . . . C 2 -13.037 22.369 29.644 1 83.94 ? NAV 3LH 1101 A 1 HETATM 31 N NAY 3LH . . . C 2 -12.06 23.025 29.458 1 82.27 ? NAY 3LH 1101 A 1 HETATM 32 C CAO 3LH . . . C 2 -10.968 22.347 29.777 1 71.46 ? CAO 3LH 1101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #