data_4WDD # _model_server_result.job_id kUDJezBXlCn7nFbURlGsLA _model_server_result.datetime_utc '2024-11-25 13:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WDD # _exptl.entry_id 4WDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WDD _cell.length_a 42.23 _cell.length_b 46.03 _cell.length_c 106.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4WDD _atom_sites.fract_transf_matrix[1][1] 0.02368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 401 1 CIT CIT . C 3 CL A 1 402 1 CL CL . D 4 GOL A 1 403 1 GOL GOL . E 3 CL A 1 404 1 CL CL . F 5 HOH A 1 501 33 HOH HOH . F 5 HOH A 2 502 8 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . F 5 HOH A 4 504 31 HOH HOH . F 5 HOH A 5 505 37 HOH HOH . F 5 HOH A 6 506 2 HOH HOH . F 5 HOH A 7 507 30 HOH HOH . F 5 HOH A 8 508 20 HOH HOH . F 5 HOH A 9 509 12 HOH HOH . F 5 HOH A 10 510 27 HOH HOH . F 5 HOH A 11 511 16 HOH HOH . F 5 HOH A 12 512 41 HOH HOH . F 5 HOH A 13 513 49 HOH HOH . F 5 HOH A 14 514 44 HOH HOH . F 5 HOH A 15 515 43 HOH HOH . F 5 HOH A 16 516 42 HOH HOH . F 5 HOH A 17 517 47 HOH HOH . F 5 HOH A 18 518 38 HOH HOH . F 5 HOH A 19 519 28 HOH HOH . F 5 HOH A 20 520 50 HOH HOH . F 5 HOH A 21 521 64 HOH HOH . F 5 HOH A 22 522 62 HOH HOH . F 5 HOH A 23 523 65 HOH HOH . F 5 HOH A 24 524 1 HOH HOH . F 5 HOH A 25 525 4 HOH HOH . F 5 HOH A 26 526 5 HOH HOH . F 5 HOH A 27 527 6 HOH HOH . F 5 HOH A 28 528 7 HOH HOH . F 5 HOH A 29 529 9 HOH HOH . F 5 HOH A 30 530 10 HOH HOH . F 5 HOH A 31 531 11 HOH HOH . F 5 HOH A 32 532 13 HOH HOH . F 5 HOH A 33 533 14 HOH HOH . F 5 HOH A 34 534 15 HOH HOH . F 5 HOH A 35 535 17 HOH HOH . F 5 HOH A 36 536 18 HOH HOH . F 5 HOH A 37 537 19 HOH HOH . F 5 HOH A 38 538 21 HOH HOH . F 5 HOH A 39 539 22 HOH HOH . F 5 HOH A 40 540 23 HOH HOH . F 5 HOH A 41 541 24 HOH HOH . F 5 HOH A 42 542 25 HOH HOH . F 5 HOH A 43 543 26 HOH HOH . F 5 HOH A 44 544 29 HOH HOH . F 5 HOH A 45 545 32 HOH HOH . F 5 HOH A 46 546 35 HOH HOH . F 5 HOH A 47 547 36 HOH HOH . F 5 HOH A 48 548 40 HOH HOH . F 5 HOH A 49 549 45 HOH HOH . F 5 HOH A 50 550 46 HOH HOH . F 5 HOH A 51 551 48 HOH HOH . F 5 HOH A 52 552 51 HOH HOH . F 5 HOH A 53 553 52 HOH HOH . F 5 HOH A 54 554 54 HOH HOH . F 5 HOH A 55 555 56 HOH HOH . F 5 HOH A 56 556 57 HOH HOH . F 5 HOH A 57 557 58 HOH HOH . F 5 HOH A 58 558 60 HOH HOH . F 5 HOH A 59 559 61 HOH HOH . F 5 HOH A 60 560 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 -6.286 5.543 -25.701 1 61.85 ? C1 CIT 401 A 1 HETATM 2 O O1 CIT . . . B 2 -6.681 5.792 -26.861 1 63.41 ? O1 CIT 401 A 1 HETATM 3 O O2 CIT . . . B 2 -5.098 5.803 -25.403 1 61.05 ? O2 CIT 401 A 1 HETATM 4 C C2 CIT . . . B 2 -7.236 4.932 -24.694 1 60.14 ? C2 CIT 401 A 1 HETATM 5 C C3 CIT . . . B 2 -7.337 5.765 -23.415 1 60.77 ? C3 CIT 401 A 1 HETATM 6 O O7 CIT . . . B 2 -7.193 7.16 -23.785 1 58.72 ? O7 CIT 401 A 1 HETATM 7 C C4 CIT . . . B 2 -8.724 5.584 -22.792 1 53.5 ? C4 CIT 401 A 1 HETATM 8 C C5 CIT . . . B 2 -8.798 5.856 -21.304 1 53.52 ? C5 CIT 401 A 1 HETATM 9 O O3 CIT . . . B 2 -8.105 6.742 -20.761 1 55.87 ? O3 CIT 401 A 1 HETATM 10 O O4 CIT . . . B 2 -9.566 5.176 -20.585 1 56.01 ? O4 CIT 401 A 1 HETATM 11 C C6 CIT . . . B 2 -6.195 5.359 -22.488 1 62.21 ? C6 CIT 401 A 1 HETATM 12 O O5 CIT . . . B 2 -5.062 5.865 -22.629 1 61.84 ? O5 CIT 401 A 1 HETATM 13 O O6 CIT . . . B 2 -6.355 4.503 -21.591 1 60.81 ? O6 CIT 401 A 1 HETATM 14 H H21 CIT . . . B 2 -8.225 4.842 -25.143 1 72.17 ? H21 CIT 401 A 1 HETATM 15 H H22 CIT . . . B 2 -6.894 3.928 -24.442 1 72.17 ? H22 CIT 401 A 1 HETATM 16 H HO7 CIT . . . B 2 -6.394 7.532 -23.357 1 70.46 ? HO7 CIT 401 A 1 HETATM 17 H H41 CIT . . . B 2 -9.057 4.562 -22.976 1 64.21 ? H41 CIT 401 A 1 HETATM 18 H H42 CIT . . . B 2 -9.423 6.246 -23.302 1 64.21 ? H42 CIT 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #