data_4WDD # _model_server_result.job_id 8VYA0SyWKXtuFQXEgTqDkQ _model_server_result.datetime_utc '2024-11-25 13:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4WDD # _exptl.entry_id 4WDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WDD _cell.length_a 42.23 _cell.length_b 46.03 _cell.length_c 106.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 4WDD _atom_sites.fract_transf_matrix[1][1] 0.02368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 401 1 CIT CIT . C 3 CL A 1 402 1 CL CL . D 4 GOL A 1 403 1 GOL GOL . E 3 CL A 1 404 1 CL CL . F 5 HOH A 1 501 33 HOH HOH . F 5 HOH A 2 502 8 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . F 5 HOH A 4 504 31 HOH HOH . F 5 HOH A 5 505 37 HOH HOH . F 5 HOH A 6 506 2 HOH HOH . F 5 HOH A 7 507 30 HOH HOH . F 5 HOH A 8 508 20 HOH HOH . F 5 HOH A 9 509 12 HOH HOH . F 5 HOH A 10 510 27 HOH HOH . F 5 HOH A 11 511 16 HOH HOH . F 5 HOH A 12 512 41 HOH HOH . F 5 HOH A 13 513 49 HOH HOH . F 5 HOH A 14 514 44 HOH HOH . F 5 HOH A 15 515 43 HOH HOH . F 5 HOH A 16 516 42 HOH HOH . F 5 HOH A 17 517 47 HOH HOH . F 5 HOH A 18 518 38 HOH HOH . F 5 HOH A 19 519 28 HOH HOH . F 5 HOH A 20 520 50 HOH HOH . F 5 HOH A 21 521 64 HOH HOH . F 5 HOH A 22 522 62 HOH HOH . F 5 HOH A 23 523 65 HOH HOH . F 5 HOH A 24 524 1 HOH HOH . F 5 HOH A 25 525 4 HOH HOH . F 5 HOH A 26 526 5 HOH HOH . F 5 HOH A 27 527 6 HOH HOH . F 5 HOH A 28 528 7 HOH HOH . F 5 HOH A 29 529 9 HOH HOH . F 5 HOH A 30 530 10 HOH HOH . F 5 HOH A 31 531 11 HOH HOH . F 5 HOH A 32 532 13 HOH HOH . F 5 HOH A 33 533 14 HOH HOH . F 5 HOH A 34 534 15 HOH HOH . F 5 HOH A 35 535 17 HOH HOH . F 5 HOH A 36 536 18 HOH HOH . F 5 HOH A 37 537 19 HOH HOH . F 5 HOH A 38 538 21 HOH HOH . F 5 HOH A 39 539 22 HOH HOH . F 5 HOH A 40 540 23 HOH HOH . F 5 HOH A 41 541 24 HOH HOH . F 5 HOH A 42 542 25 HOH HOH . F 5 HOH A 43 543 26 HOH HOH . F 5 HOH A 44 544 29 HOH HOH . F 5 HOH A 45 545 32 HOH HOH . F 5 HOH A 46 546 35 HOH HOH . F 5 HOH A 47 547 36 HOH HOH . F 5 HOH A 48 548 40 HOH HOH . F 5 HOH A 49 549 45 HOH HOH . F 5 HOH A 50 550 46 HOH HOH . F 5 HOH A 51 551 48 HOH HOH . F 5 HOH A 52 552 51 HOH HOH . F 5 HOH A 53 553 52 HOH HOH . F 5 HOH A 54 554 54 HOH HOH . F 5 HOH A 55 555 56 HOH HOH . F 5 HOH A 56 556 57 HOH HOH . F 5 HOH A 57 557 58 HOH HOH . F 5 HOH A 58 558 60 HOH HOH . F 5 HOH A 59 559 61 HOH HOH . F 5 HOH A 60 560 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 3.47 24.65 -19.177 1 63.98 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 3.696 24.994 -17.828 1 65.03 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 4 25.746 -20.096 1 65.09 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 3.038 26.772 -20.21 1 64.11 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 4.319 25.186 -21.48 1 64.08 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 5.301 24.177 -21.391 1 62.22 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . D 4 2.402 24.514 -19.346 1 76.78 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . D 4 3.971 23.708 -19.403 1 76.78 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . D 4 3.295 24.315 -17.246 1 78.04 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . D 4 4.916 26.148 -19.664 1 78.11 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . D 4 3.387 27.483 -20.788 1 76.93 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . D 4 3.413 24.775 -21.925 1 76.89 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . D 4 4.677 25.989 -22.125 1 76.89 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . D 4 5.499 23.834 -22.288 1 74.67 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #