data_4WDE # _model_server_result.job_id TVzZ9NOTPm0VnKMkG4zWgA _model_server_result.datetime_utc '2024-11-25 13:38:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4WDE # _exptl.entry_id 4WDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.93 _cell.angle_gamma 90 _cell.entry_id 4WDE _cell.length_a 42.37 _cell.length_b 46.44 _cell.length_c 107.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4WDE _atom_sites.fract_transf_matrix[1][1] 0.023602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00162 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 3 HOH A 1 501 167 HOH HOH . D 3 HOH A 2 502 73 HOH HOH . D 3 HOH A 3 503 111 HOH HOH . D 3 HOH A 4 504 108 HOH HOH . D 3 HOH A 5 505 112 HOH HOH . D 3 HOH A 6 506 123 HOH HOH . D 3 HOH A 7 507 39 HOH HOH . D 3 HOH A 8 508 146 HOH HOH . D 3 HOH A 9 509 170 HOH HOH . D 3 HOH A 10 510 147 HOH HOH . D 3 HOH A 11 511 86 HOH HOH . D 3 HOH A 12 512 160 HOH HOH . D 3 HOH A 13 513 99 HOH HOH . D 3 HOH A 14 514 124 HOH HOH . D 3 HOH A 15 515 171 HOH HOH . D 3 HOH A 16 516 177 HOH HOH . D 3 HOH A 17 517 68 HOH HOH . D 3 HOH A 18 518 4 HOH HOH . D 3 HOH A 19 519 5 HOH HOH . D 3 HOH A 20 520 9 HOH HOH . D 3 HOH A 21 521 10 HOH HOH . D 3 HOH A 22 522 13 HOH HOH . D 3 HOH A 23 523 14 HOH HOH . D 3 HOH A 24 524 17 HOH HOH . D 3 HOH A 25 525 19 HOH HOH . D 3 HOH A 26 526 22 HOH HOH . D 3 HOH A 27 527 23 HOH HOH . D 3 HOH A 28 528 24 HOH HOH . D 3 HOH A 29 529 26 HOH HOH . D 3 HOH A 30 530 33 HOH HOH . D 3 HOH A 31 531 35 HOH HOH . D 3 HOH A 32 532 37 HOH HOH . D 3 HOH A 33 533 48 HOH HOH . D 3 HOH A 34 534 49 HOH HOH . D 3 HOH A 35 535 50 HOH HOH . D 3 HOH A 36 536 52 HOH HOH . D 3 HOH A 37 537 57 HOH HOH . D 3 HOH A 38 538 58 HOH HOH . D 3 HOH A 39 539 66 HOH HOH . D 3 HOH A 40 540 72 HOH HOH . D 3 HOH A 41 541 78 HOH HOH . D 3 HOH A 42 542 81 HOH HOH . D 3 HOH A 43 543 84 HOH HOH . D 3 HOH A 44 544 87 HOH HOH . D 3 HOH A 45 545 100 HOH HOH . D 3 HOH A 46 546 101 HOH HOH . D 3 HOH A 47 547 102 HOH HOH . D 3 HOH A 48 548 103 HOH HOH . D 3 HOH A 49 549 104 HOH HOH . D 3 HOH A 50 550 105 HOH HOH . D 3 HOH A 51 551 106 HOH HOH . D 3 HOH A 52 552 109 HOH HOH . D 3 HOH A 53 553 110 HOH HOH . D 3 HOH A 54 554 113 HOH HOH . D 3 HOH A 55 555 114 HOH HOH . D 3 HOH A 56 556 115 HOH HOH . D 3 HOH A 57 557 116 HOH HOH . D 3 HOH A 58 558 117 HOH HOH . D 3 HOH A 59 559 118 HOH HOH . D 3 HOH A 60 560 119 HOH HOH . D 3 HOH A 61 561 120 HOH HOH . D 3 HOH A 62 562 121 HOH HOH . D 3 HOH A 63 563 122 HOH HOH . D 3 HOH A 64 564 149 HOH HOH . D 3 HOH A 65 565 150 HOH HOH . D 3 HOH A 66 566 151 HOH HOH . D 3 HOH A 67 567 152 HOH HOH . D 3 HOH A 68 568 153 HOH HOH . D 3 HOH A 69 569 161 HOH HOH . D 3 HOH A 70 570 168 HOH HOH . D 3 HOH A 71 571 179 HOH HOH . E 3 HOH B 1 401 18 HOH HOH . E 3 HOH B 2 402 28 HOH HOH . E 3 HOH B 3 403 71 HOH HOH . E 3 HOH B 4 404 3 HOH HOH . E 3 HOH B 5 405 127 HOH HOH . E 3 HOH B 6 406 132 HOH HOH . E 3 HOH B 7 407 129 HOH HOH . E 3 HOH B 8 408 155 HOH HOH . E 3 HOH B 9 409 143 HOH HOH . E 3 HOH B 10 410 141 HOH HOH . E 3 HOH B 11 411 97 HOH HOH . E 3 HOH B 12 412 67 HOH HOH . E 3 HOH B 13 413 128 HOH HOH . E 3 HOH B 14 414 159 HOH HOH . E 3 HOH B 15 415 158 HOH HOH . E 3 HOH B 16 416 64 HOH HOH . E 3 HOH B 17 417 2 HOH HOH . E 3 HOH B 18 418 7 HOH HOH . E 3 HOH B 19 419 11 HOH HOH . E 3 HOH B 20 420 12 HOH HOH . E 3 HOH B 21 421 16 HOH HOH . E 3 HOH B 22 422 21 HOH HOH . E 3 HOH B 23 423 25 HOH HOH . E 3 HOH B 24 424 27 HOH HOH . E 3 HOH B 25 425 30 HOH HOH . E 3 HOH B 26 426 31 HOH HOH . E 3 HOH B 27 427 32 HOH HOH . E 3 HOH B 28 428 34 HOH HOH . E 3 HOH B 29 429 36 HOH HOH . E 3 HOH B 30 430 38 HOH HOH . E 3 HOH B 31 431 41 HOH HOH . E 3 HOH B 32 432 42 HOH HOH . E 3 HOH B 33 433 45 HOH HOH . E 3 HOH B 34 434 46 HOH HOH . E 3 HOH B 35 435 47 HOH HOH . E 3 HOH B 36 436 51 HOH HOH . E 3 HOH B 37 437 54 HOH HOH . E 3 HOH B 38 438 56 HOH HOH . E 3 HOH B 39 439 59 HOH HOH . E 3 HOH B 40 440 70 HOH HOH . E 3 HOH B 41 441 74 HOH HOH . E 3 HOH B 42 442 88 HOH HOH . E 3 HOH B 43 443 90 HOH HOH . E 3 HOH B 44 444 94 HOH HOH . E 3 HOH B 45 445 96 HOH HOH . E 3 HOH B 46 446 98 HOH HOH . E 3 HOH B 47 447 126 HOH HOH . E 3 HOH B 48 448 130 HOH HOH . E 3 HOH B 49 449 131 HOH HOH . E 3 HOH B 50 450 133 HOH HOH . E 3 HOH B 51 451 134 HOH HOH . E 3 HOH B 52 452 136 HOH HOH . E 3 HOH B 53 453 137 HOH HOH . E 3 HOH B 54 454 138 HOH HOH . E 3 HOH B 55 455 139 HOH HOH . E 3 HOH B 56 456 140 HOH HOH . E 3 HOH B 57 457 142 HOH HOH . E 3 HOH B 58 458 144 HOH HOH . E 3 HOH B 59 459 154 HOH HOH . E 3 HOH B 60 460 156 HOH HOH . E 3 HOH B 61 461 157 HOH HOH . E 3 HOH B 62 462 162 HOH HOH . E 3 HOH B 63 463 163 HOH HOH . E 3 HOH B 64 464 164 HOH HOH . E 3 HOH B 65 465 172 HOH HOH . E 3 HOH B 66 466 173 HOH HOH . E 3 HOH B 67 467 174 HOH HOH . E 3 HOH B 68 468 175 HOH HOH . E 3 HOH B 69 469 176 HOH HOH . E 3 HOH B 70 470 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 44.011 5.583 49.589 1 46.56 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 2 43.962 5.996 48.242 1 45.95 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 2 44.502 6.737 50.457 1 47.15 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 2 43.815 7.917 50.107 1 47.55 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 2 44.274 6.431 51.934 1 47.04 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 2 42.898 6.253 52.189 1 47 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . C 2 43.019 5.272 49.917 1 55.87 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . C 2 44.686 4.733 49.69 1 55.87 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . C 2 43.709 5.236 47.677 1 55.14 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . C 2 45.571 6.869 50.289 1 56.58 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . C 2 42.858 7.801 50.281 1 57.06 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . C 2 44.656 7.251 52.541 1 56.45 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . C 2 44.817 5.526 52.208 1 56.45 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . C 2 42.447 7.122 52.164 1 56.4 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #