data_4WDI
#
_model_server_result.job_id            1Lc-WHLpbMsCIdbICjdWeQ 
_model_server_result.datetime_utc      '2024-12-03 19:05:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wdi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":101}' 
#
_entry.id    4WDI 
#
_exptl.entry_id    4WDI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         68.11 
_cell.angle_beta          85.79 
_cell.angle_gamma         85.18 
_cell.entry_id            4WDI 
_cell.length_a            46.93 
_cell.length_b            62.69 
_cell.length_c            72.67 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WDI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,L,M 1 1 
D,E,F,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
disulf ? disulf4 D SG CYS 102 D CYS 101 1_555 D SG CYS 165 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
disulf ? disulf5 D SG CYS 204 D CYS 203 1_555 D SG CYS 260 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 299 n n 
S O2 SO4 doub 300 n n 
S O3 SO4 sing 301 n n 
S O4 SO4 sing 302 n n 
#
_atom_sites.entry_id                     4WDI 
_atom_sites.fract_transf_matrix[1][1]    0.021308 
_atom_sites.fract_transf_matrix[1][2]    -0.001797 
_atom_sites.fract_transf_matrix[1][3]    -0.000974 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016008 
_atom_sites.fract_transf_matrix[2][3]    -0.006355 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 EDO A 1 301 301 EDO EDO . 
H 5 SO4 A 1 302 314 SO4 SO4 . 
I 5 SO4 B 1 101 311 SO4 SO4 . 
J 5 SO4 B 1 102 312 SO4 SO4 . 
K 5 SO4 E 1 101 313 SO4 SO4 . 
L 6 HOH A 1 401 419 HOH HOH . 
L 6 HOH A 2 402 514 HOH HOH . 
L 6 HOH A 3 403 484 HOH HOH . 
L 6 HOH A 4 404 472 HOH HOH . 
L 6 HOH A 5 405 462 HOH HOH . 
L 6 HOH A 6 406 448 HOH HOH . 
L 6 HOH A 7 407 470 HOH HOH . 
L 6 HOH A 8 408 516 HOH HOH . 
L 6 HOH A 9 409 455 HOH HOH . 
L 6 HOH A 10 410 468 HOH HOH . 
L 6 HOH A 11 411 528 HOH HOH . 
L 6 HOH A 12 412 519 HOH HOH . 
L 6 HOH A 13 413 423 HOH HOH . 
L 6 HOH A 14 414 464 HOH HOH . 
L 6 HOH A 15 415 548 HOH HOH . 
L 6 HOH A 16 416 401 HOH HOH . 
L 6 HOH A 17 417 404 HOH HOH . 
L 6 HOH A 18 418 406 HOH HOH . 
L 6 HOH A 19 419 407 HOH HOH . 
L 6 HOH A 20 420 409 HOH HOH . 
L 6 HOH A 21 421 410 HOH HOH . 
L 6 HOH A 22 422 411 HOH HOH . 
L 6 HOH A 23 423 415 HOH HOH . 
L 6 HOH A 24 424 416 HOH HOH . 
L 6 HOH A 25 425 420 HOH HOH . 
L 6 HOH A 26 426 422 HOH HOH . 
L 6 HOH A 27 427 432 HOH HOH . 
L 6 HOH A 28 428 435 HOH HOH . 
L 6 HOH A 29 429 440 HOH HOH . 
L 6 HOH A 30 430 441 HOH HOH . 
L 6 HOH A 31 431 442 HOH HOH . 
L 6 HOH A 32 432 456 HOH HOH . 
L 6 HOH A 33 433 480 HOH HOH . 
L 6 HOH A 34 434 481 HOH HOH . 
L 6 HOH A 35 435 492 HOH HOH . 
L 6 HOH A 36 436 502 HOH HOH . 
L 6 HOH A 37 437 509 HOH HOH . 
L 6 HOH A 38 438 510 HOH HOH . 
L 6 HOH A 39 439 517 HOH HOH . 
L 6 HOH A 40 440 529 HOH HOH . 
L 6 HOH A 41 441 531 HOH HOH . 
L 6 HOH A 42 442 537 HOH HOH . 
L 6 HOH A 43 443 538 HOH HOH . 
L 6 HOH A 44 444 539 HOH HOH . 
L 6 HOH A 45 445 542 HOH HOH . 
L 6 HOH A 46 446 547 HOH HOH . 
M 6 HOH B 1 201 507 HOH HOH . 
M 6 HOH B 2 202 439 HOH HOH . 
M 6 HOH B 3 203 535 HOH HOH . 
M 6 HOH B 4 204 558 HOH HOH . 
M 6 HOH B 5 205 429 HOH HOH . 
M 6 HOH B 6 206 489 HOH HOH . 
M 6 HOH B 7 207 412 HOH HOH . 
M 6 HOH B 8 208 414 HOH HOH . 
M 6 HOH B 9 209 426 HOH HOH . 
M 6 HOH B 10 210 433 HOH HOH . 
M 6 HOH B 11 211 437 HOH HOH . 
M 6 HOH B 12 212 438 HOH HOH . 
M 6 HOH B 13 213 443 HOH HOH . 
M 6 HOH B 14 214 445 HOH HOH . 
M 6 HOH B 15 215 447 HOH HOH . 
M 6 HOH B 16 216 454 HOH HOH . 
M 6 HOH B 17 217 488 HOH HOH . 
M 6 HOH B 18 218 491 HOH HOH . 
M 6 HOH B 19 219 495 HOH HOH . 
M 6 HOH B 20 220 501 HOH HOH . 
M 6 HOH B 21 221 505 HOH HOH . 
M 6 HOH B 22 222 506 HOH HOH . 
M 6 HOH B 23 223 508 HOH HOH . 
M 6 HOH B 24 224 512 HOH HOH . 
M 6 HOH B 25 225 513 HOH HOH . 
M 6 HOH B 26 226 523 HOH HOH . 
M 6 HOH B 27 227 545 HOH HOH . 
N 6 HOH D 1 301 474 HOH HOH . 
N 6 HOH D 2 302 466 HOH HOH . 
N 6 HOH D 3 303 551 HOH HOH . 
N 6 HOH D 4 304 493 HOH HOH . 
N 6 HOH D 5 305 469 HOH HOH . 
N 6 HOH D 6 306 486 HOH HOH . 
N 6 HOH D 7 307 498 HOH HOH . 
N 6 HOH D 8 308 408 HOH HOH . 
N 6 HOH D 9 309 518 HOH HOH . 
N 6 HOH D 10 310 546 HOH HOH . 
N 6 HOH D 11 311 550 HOH HOH . 
N 6 HOH D 12 312 522 HOH HOH . 
N 6 HOH D 13 313 402 HOH HOH . 
N 6 HOH D 14 314 403 HOH HOH . 
N 6 HOH D 15 315 405 HOH HOH . 
N 6 HOH D 16 316 417 HOH HOH . 
N 6 HOH D 17 317 421 HOH HOH . 
N 6 HOH D 18 318 424 HOH HOH . 
N 6 HOH D 19 319 425 HOH HOH . 
N 6 HOH D 20 320 427 HOH HOH . 
N 6 HOH D 21 321 430 HOH HOH . 
N 6 HOH D 22 322 436 HOH HOH . 
N 6 HOH D 23 323 444 HOH HOH . 
N 6 HOH D 24 324 449 HOH HOH . 
N 6 HOH D 25 325 450 HOH HOH . 
N 6 HOH D 26 326 451 HOH HOH . 
N 6 HOH D 27 327 452 HOH HOH . 
N 6 HOH D 28 328 453 HOH HOH . 
N 6 HOH D 29 329 457 HOH HOH . 
N 6 HOH D 30 330 458 HOH HOH . 
N 6 HOH D 31 331 459 HOH HOH . 
N 6 HOH D 32 332 460 HOH HOH . 
N 6 HOH D 33 333 463 HOH HOH . 
N 6 HOH D 34 334 465 HOH HOH . 
N 6 HOH D 35 335 471 HOH HOH . 
N 6 HOH D 36 336 473 HOH HOH . 
N 6 HOH D 37 337 478 HOH HOH . 
N 6 HOH D 38 338 483 HOH HOH . 
N 6 HOH D 39 339 485 HOH HOH . 
N 6 HOH D 40 340 494 HOH HOH . 
N 6 HOH D 41 341 496 HOH HOH . 
N 6 HOH D 42 342 500 HOH HOH . 
N 6 HOH D 43 343 503 HOH HOH . 
N 6 HOH D 44 344 511 HOH HOH . 
N 6 HOH D 45 345 515 HOH HOH . 
N 6 HOH D 46 346 521 HOH HOH . 
N 6 HOH D 47 347 525 HOH HOH . 
N 6 HOH D 48 348 526 HOH HOH . 
N 6 HOH D 49 349 530 HOH HOH . 
N 6 HOH D 50 350 533 HOH HOH . 
N 6 HOH D 51 351 536 HOH HOH . 
N 6 HOH D 52 352 540 HOH HOH . 
N 6 HOH D 53 353 541 HOH HOH . 
N 6 HOH D 54 354 543 HOH HOH . 
N 6 HOH D 55 355 544 HOH HOH . 
N 6 HOH D 56 356 549 HOH HOH . 
N 6 HOH D 57 357 552 HOH HOH . 
N 6 HOH D 58 358 553 HOH HOH . 
N 6 HOH D 59 359 554 HOH HOH . 
N 6 HOH D 60 360 556 HOH HOH . 
N 6 HOH D 61 361 557 HOH HOH . 
N 6 HOH D 62 362 559 HOH HOH . 
O 6 HOH E 1 201 482 HOH HOH . 
O 6 HOH E 2 202 428 HOH HOH . 
O 6 HOH E 3 203 490 HOH HOH . 
O 6 HOH E 4 204 532 HOH HOH . 
O 6 HOH E 5 205 499 HOH HOH . 
O 6 HOH E 6 206 413 HOH HOH . 
O 6 HOH E 7 207 418 HOH HOH . 
O 6 HOH E 8 208 431 HOH HOH . 
O 6 HOH E 9 209 434 HOH HOH . 
O 6 HOH E 10 210 446 HOH HOH . 
O 6 HOH E 11 211 461 HOH HOH . 
O 6 HOH E 12 212 467 HOH HOH . 
O 6 HOH E 13 213 475 HOH HOH . 
O 6 HOH E 14 214 476 HOH HOH . 
O 6 HOH E 15 215 477 HOH HOH . 
O 6 HOH E 16 216 479 HOH HOH . 
O 6 HOH E 17 217 487 HOH HOH . 
O 6 HOH E 18 218 497 HOH HOH . 
O 6 HOH E 19 219 504 HOH HOH . 
O 6 HOH E 20 220 520 HOH HOH . 
O 6 HOH E 21 221 524 HOH HOH . 
O 6 HOH E 22 222 527 HOH HOH . 
O 6 HOH E 23 223 534 HOH HOH . 
O 6 HOH E 24 224 555 HOH HOH . 
O 6 HOH E 25 225 560 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . I 5 46.105 35.214 64.382 1 46.93 ? S SO4 101 B 1 
HETATM 2 O O1 SO4 . . . I 5 46.489 34.912 63.01 1 49.11 ? O1 SO4 101 B 1 
HETATM 3 O O2 SO4 . . . I 5 44.723 35.629 64.054 1 46.1 ? O2 SO4 101 B 1 
HETATM 4 O O3 SO4 . . . I 5 46.187 34.107 65.326 1 44.92 ? O3 SO4 101 B 1 
HETATM 5 O O4 SO4 . . . I 5 46.993 36.236 64.953 1 46.23 ? O4 SO4 101 B 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           501 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           5 
#