data_4WDT # _model_server_result.job_id l3qvXaYpvlpRPOjra4gejw _model_server_result.datetime_utc '2024-12-24 16:27:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4WDT # _exptl.entry_id 4WDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.269 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-nitro-5-(phenylsulfonyl)phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WDT _cell.length_a 55.507 _cell.length_b 62.565 _cell.length_c 96.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H9 N O5 S' _chem_comp.formula_weight 279.269 _chem_comp.id WDT _chem_comp.mon_nstd_flag . _chem_comp.name 2-nitro-5-(phenylsulfonyl)phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 S2 WDT doub 456 n n S2 O7 WDT doub 457 n n S2 C5 WDT sing 458 n n S2 C1 WDT sing 459 n n C10 C5 WDT doub 460 n y C10 C14 WDT sing 461 n y C5 C11 WDT sing 462 n y C14 C17 WDT doub 463 n y C11 C15 WDT doub 464 n y C3 C1 WDT doub 465 n y C3 C8 WDT sing 466 n y C1 C4 WDT sing 467 n y C17 C15 WDT sing 468 n y O13 C8 WDT sing 469 n n C8 C12 WDT doub 470 n y C4 C9 WDT doub 471 n y C12 C9 WDT sing 472 n y C12 N16 WDT sing 473 n n N16 O18 WDT doub 474 n n N16 O19 WDT sing 475 n n C17 H1 WDT sing 476 n n C14 H2 WDT sing 477 n n C15 H3 WDT sing 478 n n C9 H4 WDT sing 479 n n C10 H5 WDT sing 480 n n C11 H6 WDT sing 481 n n C4 H7 WDT sing 482 n n C3 H8 WDT sing 483 n n O13 H9 WDT sing 484 n n # _atom_sites.entry_id 4WDT _atom_sites.fract_transf_matrix[1][1] 0.018016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 1 NAP NAD . C 3 WDT A 1 402 1 WDT UNL . D 4 HOH A 1 501 118 HOH HOH . D 4 HOH A 2 502 196 HOH HOH . D 4 HOH A 3 503 198 HOH HOH . D 4 HOH A 4 504 115 HOH HOH . D 4 HOH A 5 505 96 HOH HOH . D 4 HOH A 6 506 33 HOH HOH . D 4 HOH A 7 507 23 HOH HOH . D 4 HOH A 8 508 90 HOH HOH . D 4 HOH A 9 509 20 HOH HOH . D 4 HOH A 10 510 73 HOH HOH . D 4 HOH A 11 511 125 HOH HOH . D 4 HOH A 12 512 42 HOH HOH . D 4 HOH A 13 513 11 HOH HOH . D 4 HOH A 14 514 86 HOH HOH . D 4 HOH A 15 515 135 HOH HOH . D 4 HOH A 16 516 174 HOH HOH . D 4 HOH A 17 517 78 HOH HOH . D 4 HOH A 18 518 130 HOH HOH . D 4 HOH A 19 519 5 HOH HOH . D 4 HOH A 20 520 206 HOH HOH . D 4 HOH A 21 521 36 HOH HOH . D 4 HOH A 22 522 141 HOH HOH . D 4 HOH A 23 523 111 HOH HOH . D 4 HOH A 24 524 81 HOH HOH . D 4 HOH A 25 525 122 HOH HOH . D 4 HOH A 26 526 93 HOH HOH . D 4 HOH A 27 527 101 HOH HOH . D 4 HOH A 28 528 165 HOH HOH . D 4 HOH A 29 529 146 HOH HOH . D 4 HOH A 30 530 126 HOH HOH . D 4 HOH A 31 531 150 HOH HOH . D 4 HOH A 32 532 62 HOH HOH . D 4 HOH A 33 533 66 HOH HOH . D 4 HOH A 34 534 72 HOH HOH . D 4 HOH A 35 535 84 HOH HOH . D 4 HOH A 36 536 58 HOH HOH . D 4 HOH A 37 537 56 HOH HOH . D 4 HOH A 38 538 69 HOH HOH . D 4 HOH A 39 539 170 HOH HOH . D 4 HOH A 40 540 24 HOH HOH . D 4 HOH A 41 541 178 HOH HOH . D 4 HOH A 42 542 167 HOH HOH . D 4 HOH A 43 543 105 HOH HOH . D 4 HOH A 44 544 155 HOH HOH . D 4 HOH A 45 545 108 HOH HOH . D 4 HOH A 46 546 199 HOH HOH . D 4 HOH A 47 547 48 HOH HOH . D 4 HOH A 48 548 47 HOH HOH . D 4 HOH A 49 549 17 HOH HOH . D 4 HOH A 50 550 193 HOH HOH . D 4 HOH A 51 551 110 HOH HOH . D 4 HOH A 52 552 65 HOH HOH . D 4 HOH A 53 553 14 HOH HOH . D 4 HOH A 54 554 31 HOH HOH . D 4 HOH A 55 555 157 HOH HOH . D 4 HOH A 56 556 76 HOH HOH . D 4 HOH A 57 557 204 HOH HOH . D 4 HOH A 58 558 151 HOH HOH . D 4 HOH A 59 559 60 HOH HOH . D 4 HOH A 60 560 202 HOH HOH . D 4 HOH A 61 561 194 HOH HOH . D 4 HOH A 62 562 112 HOH HOH . D 4 HOH A 63 563 138 HOH HOH . D 4 HOH A 64 564 61 HOH HOH . D 4 HOH A 65 565 139 HOH HOH . D 4 HOH A 66 566 172 HOH HOH . D 4 HOH A 67 567 183 HOH HOH . D 4 HOH A 68 568 207 HOH HOH . D 4 HOH A 69 569 79 HOH HOH . D 4 HOH A 70 570 203 HOH HOH . D 4 HOH A 71 571 182 HOH HOH . D 4 HOH A 72 572 163 HOH HOH . D 4 HOH A 73 573 147 HOH HOH . D 4 HOH A 74 574 190 HOH HOH . D 4 HOH A 75 575 177 HOH HOH . D 4 HOH A 76 576 168 HOH HOH . D 4 HOH A 77 577 1 HOH HOH . D 4 HOH A 78 578 2 HOH HOH . D 4 HOH A 79 579 3 HOH HOH . D 4 HOH A 80 580 4 HOH HOH . D 4 HOH A 81 581 6 HOH HOH . D 4 HOH A 82 582 7 HOH HOH . D 4 HOH A 83 583 8 HOH HOH . D 4 HOH A 84 584 9 HOH HOH . D 4 HOH A 85 585 10 HOH HOH . D 4 HOH A 86 586 12 HOH HOH . D 4 HOH A 87 587 13 HOH HOH . D 4 HOH A 88 588 15 HOH HOH . D 4 HOH A 89 589 16 HOH HOH . D 4 HOH A 90 590 18 HOH HOH . D 4 HOH A 91 591 19 HOH HOH . D 4 HOH A 92 592 21 HOH HOH . D 4 HOH A 93 593 22 HOH HOH . D 4 HOH A 94 594 25 HOH HOH . D 4 HOH A 95 595 26 HOH HOH . D 4 HOH A 96 596 27 HOH HOH . D 4 HOH A 97 597 28 HOH HOH . D 4 HOH A 98 598 29 HOH HOH . D 4 HOH A 99 599 30 HOH HOH . D 4 HOH A 100 600 32 HOH HOH . D 4 HOH A 101 601 34 HOH HOH . D 4 HOH A 102 602 35 HOH HOH . D 4 HOH A 103 603 37 HOH HOH . D 4 HOH A 104 604 38 HOH HOH . D 4 HOH A 105 605 39 HOH HOH . D 4 HOH A 106 606 40 HOH HOH . D 4 HOH A 107 607 41 HOH HOH . D 4 HOH A 108 608 43 HOH HOH . D 4 HOH A 109 609 44 HOH HOH . D 4 HOH A 110 610 45 HOH HOH . D 4 HOH A 111 611 46 HOH HOH . D 4 HOH A 112 612 49 HOH HOH . D 4 HOH A 113 613 50 HOH HOH . D 4 HOH A 114 614 51 HOH HOH . D 4 HOH A 115 615 52 HOH HOH . D 4 HOH A 116 616 53 HOH HOH . D 4 HOH A 117 617 54 HOH HOH . D 4 HOH A 118 618 55 HOH HOH . D 4 HOH A 119 619 57 HOH HOH . D 4 HOH A 120 620 59 HOH HOH . D 4 HOH A 121 621 63 HOH HOH . D 4 HOH A 122 622 64 HOH HOH . D 4 HOH A 123 623 67 HOH HOH . D 4 HOH A 124 624 68 HOH HOH . D 4 HOH A 125 625 70 HOH HOH . D 4 HOH A 126 626 71 HOH HOH . D 4 HOH A 127 627 74 HOH HOH . D 4 HOH A 128 628 75 HOH HOH . D 4 HOH A 129 629 77 HOH HOH . D 4 HOH A 130 630 80 HOH HOH . D 4 HOH A 131 631 82 HOH HOH . D 4 HOH A 132 632 83 HOH HOH . D 4 HOH A 133 633 85 HOH HOH . D 4 HOH A 134 634 87 HOH HOH . D 4 HOH A 135 635 88 HOH HOH . D 4 HOH A 136 636 89 HOH HOH . D 4 HOH A 137 637 91 HOH HOH . D 4 HOH A 138 638 92 HOH HOH . D 4 HOH A 139 639 94 HOH HOH . D 4 HOH A 140 640 95 HOH HOH . D 4 HOH A 141 641 97 HOH HOH . D 4 HOH A 142 642 98 HOH HOH . D 4 HOH A 143 643 99 HOH HOH . D 4 HOH A 144 644 100 HOH HOH . D 4 HOH A 145 645 102 HOH HOH . D 4 HOH A 146 646 103 HOH HOH . D 4 HOH A 147 647 104 HOH HOH . D 4 HOH A 148 648 106 HOH HOH . D 4 HOH A 149 649 107 HOH HOH . D 4 HOH A 150 650 109 HOH HOH . D 4 HOH A 151 651 113 HOH HOH . D 4 HOH A 152 652 114 HOH HOH . D 4 HOH A 153 653 116 HOH HOH . D 4 HOH A 154 654 117 HOH HOH . D 4 HOH A 155 655 119 HOH HOH . D 4 HOH A 156 656 120 HOH HOH . D 4 HOH A 157 657 121 HOH HOH . D 4 HOH A 158 658 123 HOH HOH . D 4 HOH A 159 659 124 HOH HOH . D 4 HOH A 160 660 127 HOH HOH . D 4 HOH A 161 661 128 HOH HOH . D 4 HOH A 162 662 129 HOH HOH . D 4 HOH A 163 663 131 HOH HOH . D 4 HOH A 164 664 132 HOH HOH . D 4 HOH A 165 665 133 HOH HOH . D 4 HOH A 166 666 134 HOH HOH . D 4 HOH A 167 667 136 HOH HOH . D 4 HOH A 168 668 137 HOH HOH . D 4 HOH A 169 669 140 HOH HOH . D 4 HOH A 170 670 142 HOH HOH . D 4 HOH A 171 671 143 HOH HOH . D 4 HOH A 172 672 144 HOH HOH . D 4 HOH A 173 673 145 HOH HOH . D 4 HOH A 174 674 148 HOH HOH . D 4 HOH A 175 675 149 HOH HOH . D 4 HOH A 176 676 152 HOH HOH . D 4 HOH A 177 677 153 HOH HOH . D 4 HOH A 178 678 154 HOH HOH . D 4 HOH A 179 679 156 HOH HOH . D 4 HOH A 180 680 158 HOH HOH . D 4 HOH A 181 681 159 HOH HOH . D 4 HOH A 182 682 160 HOH HOH . D 4 HOH A 183 683 161 HOH HOH . D 4 HOH A 184 684 162 HOH HOH . D 4 HOH A 185 685 164 HOH HOH . D 4 HOH A 186 686 166 HOH HOH . D 4 HOH A 187 687 169 HOH HOH . D 4 HOH A 188 688 171 HOH HOH . D 4 HOH A 189 689 173 HOH HOH . D 4 HOH A 190 690 175 HOH HOH . D 4 HOH A 191 691 176 HOH HOH . D 4 HOH A 192 692 179 HOH HOH . D 4 HOH A 193 693 180 HOH HOH . D 4 HOH A 194 694 181 HOH HOH . D 4 HOH A 195 695 184 HOH HOH . D 4 HOH A 196 696 185 HOH HOH . D 4 HOH A 197 697 186 HOH HOH . D 4 HOH A 198 698 187 HOH HOH . D 4 HOH A 199 699 188 HOH HOH . D 4 HOH A 200 700 189 HOH HOH . D 4 HOH A 201 701 191 HOH HOH . D 4 HOH A 202 702 192 HOH HOH . D 4 HOH A 203 703 195 HOH HOH . D 4 HOH A 204 704 197 HOH HOH . D 4 HOH A 205 705 200 HOH HOH . D 4 HOH A 206 706 201 HOH HOH . D 4 HOH A 207 707 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 WDT . . . C 3 -4.23 22.298 33.582 1 21.83 ? C17 WDT 402 A 1 HETATM 2 C C14 WDT . . . C 3 -5.247 23.051 33.014 1 21.96 ? C14 WDT 402 A 1 HETATM 3 C C15 WDT . . . C 3 -3.034 22.94 33.672 1 23.03 ? C15 WDT 402 A 1 HETATM 4 C C9 WDT . . . C 3 -3.15 28.785 35.417 1 15.2 ? C9 WDT 402 A 1 HETATM 5 C C10 WDT . . . C 3 -5.085 24.343 32.577 1 20.72 ? C10 WDT 402 A 1 HETATM 6 C C11 WDT . . . C 3 -2.811 24.244 33.232 1 27.39 ? C11 WDT 402 A 1 HETATM 7 C C4 WDT . . . C 3 -3.835 28.111 34.404 1 13.74 ? C4 WDT 402 A 1 HETATM 8 C C3 WDT . . . C 3 -1.717 27.664 33.233 1 11.61 ? C3 WDT 402 A 1 HETATM 9 C C12 WDT . . . C 3 -1.784 28.915 35.334 1 12.5 ? C12 WDT 402 A 1 HETATM 10 C C8 WDT . . . C 3 -1.091 28.353 34.239 1 11.03 ? C8 WDT 402 A 1 HETATM 11 C C5 WDT . . . C 3 -3.86 24.948 32.695 1 19.86 ? C5 WDT 402 A 1 HETATM 12 C C1 WDT . . . C 3 -3.083 27.556 33.368 1 15.13 ? C1 WDT 402 A 1 HETATM 13 N N16 WDT . . . C 3 -1.16 29.538 36.448 1 12.84 ? N16 WDT 402 A 1 HETATM 14 O O19 WDT . . . C 3 -1.701 29.663 37.6 1 15.11 ? O19 WDT 402 A 1 HETATM 15 O O18 WDT . . . C 3 0.066 29.768 36.475 1 12.67 ? O18 WDT 402 A 1 HETATM 16 O O6 WDT . . . C 3 -2.949 26.462 30.935 1 21.05 ? O6 WDT 402 A 1 HETATM 17 O O7 WDT . . . C 3 -5.16 27.127 32.139 1 25.48 ? O7 WDT 402 A 1 HETATM 18 O O13 WDT . . . C 3 0.241 28.447 34.193 1 10.95 ? O13 WDT 402 A 1 HETATM 19 S S2 WDT . . . C 3 -3.792 26.628 32.08 1 18.22 ? S2 WDT 402 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #