data_4WDU # _model_server_result.job_id magH4hDWg3Z6j8LWLtikcw _model_server_result.datetime_utc '2024-12-25 04:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4WDU # _exptl.entry_id 4WDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 315.112 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-N-(4-chlorobenzyl)-5-nitro-1H-pyrazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WDU _cell.length_a 55.422 _cell.length_b 62.297 _cell.length_c 95.997 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H8 Cl2 N4 O3' _chem_comp.formula_weight 315.112 _chem_comp.id WDU _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-N-(4-chlorobenzyl)-5-nitro-1H-pyrazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C17 WDU doub 456 n y C15 C14 WDU sing 457 n y C17 C19 WDU sing 458 n y C11 C14 WDU sing 459 n n C11 N8 WDU sing 460 n n C14 C16 WDU doub 461 n y O9 C4 WDU doub 462 n n N8 C4 WDU sing 463 n n C19 CL1 WDU sing 464 n n C19 C18 WDU doub 465 n y C4 C1 WDU sing 466 n n C16 C18 WDU sing 467 n y C1 N3 WDU doub 468 n y C1 C2 WDU sing 469 n y N3 N7 WDU sing 470 n y C2 CL6 WDU sing 471 n n C2 C5 WDU doub 472 n y N7 C5 WDU sing 473 n y C5 N10 WDU sing 474 n n N10 O13 WDU sing 475 n n N10 O12 WDU doub 476 n n C15 H1 WDU sing 477 n n C16 H2 WDU sing 478 n n C17 H3 WDU sing 479 n n C18 H4 WDU sing 480 n n C11 H5 WDU sing 481 n n C11 H6 WDU sing 482 n n N8 H8 WDU sing 483 n n N7 H7 WDU sing 484 n n # _atom_sites.entry_id 4WDU _atom_sites.fract_transf_matrix[1][1] 0.018043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 1 NAP NAD . C 3 WDU A 1 402 1 WDU UNL . D 4 HOH A 1 501 95 HOH HOH . D 4 HOH A 2 502 107 HOH HOH . D 4 HOH A 3 503 20 HOH HOH . D 4 HOH A 4 504 91 HOH HOH . D 4 HOH A 5 505 74 HOH HOH . D 4 HOH A 6 506 88 HOH HOH . D 4 HOH A 7 507 35 HOH HOH . D 4 HOH A 8 508 37 HOH HOH . D 4 HOH A 9 509 72 HOH HOH . D 4 HOH A 10 510 62 HOH HOH . D 4 HOH A 11 511 28 HOH HOH . D 4 HOH A 12 512 58 HOH HOH . D 4 HOH A 13 513 92 HOH HOH . D 4 HOH A 14 514 32 HOH HOH . D 4 HOH A 15 515 46 HOH HOH . D 4 HOH A 16 516 10 HOH HOH . D 4 HOH A 17 517 106 HOH HOH . D 4 HOH A 18 518 11 HOH HOH . D 4 HOH A 19 519 109 HOH HOH . D 4 HOH A 20 520 13 HOH HOH . D 4 HOH A 21 521 23 HOH HOH . D 4 HOH A 22 522 64 HOH HOH . D 4 HOH A 23 523 102 HOH HOH . D 4 HOH A 24 524 53 HOH HOH . D 4 HOH A 25 525 100 HOH HOH . D 4 HOH A 26 526 3 HOH HOH . D 4 HOH A 27 527 101 HOH HOH . D 4 HOH A 28 528 81 HOH HOH . D 4 HOH A 29 529 85 HOH HOH . D 4 HOH A 30 530 96 HOH HOH . D 4 HOH A 31 531 98 HOH HOH . D 4 HOH A 32 532 97 HOH HOH . D 4 HOH A 33 533 2 HOH HOH . D 4 HOH A 34 534 93 HOH HOH . D 4 HOH A 35 535 36 HOH HOH . D 4 HOH A 36 536 110 HOH HOH . D 4 HOH A 37 537 90 HOH HOH . D 4 HOH A 38 538 108 HOH HOH . D 4 HOH A 39 539 1 HOH HOH . D 4 HOH A 40 540 4 HOH HOH . D 4 HOH A 41 541 5 HOH HOH . D 4 HOH A 42 542 6 HOH HOH . D 4 HOH A 43 543 7 HOH HOH . D 4 HOH A 44 544 8 HOH HOH . D 4 HOH A 45 545 9 HOH HOH . D 4 HOH A 46 546 12 HOH HOH . D 4 HOH A 47 547 14 HOH HOH . D 4 HOH A 48 548 15 HOH HOH . D 4 HOH A 49 549 16 HOH HOH . D 4 HOH A 50 550 17 HOH HOH . D 4 HOH A 51 551 18 HOH HOH . D 4 HOH A 52 552 19 HOH HOH . D 4 HOH A 53 553 21 HOH HOH . D 4 HOH A 54 554 22 HOH HOH . D 4 HOH A 55 555 24 HOH HOH . D 4 HOH A 56 556 25 HOH HOH . D 4 HOH A 57 557 26 HOH HOH . D 4 HOH A 58 558 27 HOH HOH . D 4 HOH A 59 559 29 HOH HOH . D 4 HOH A 60 560 30 HOH HOH . D 4 HOH A 61 561 31 HOH HOH . D 4 HOH A 62 562 33 HOH HOH . D 4 HOH A 63 563 34 HOH HOH . D 4 HOH A 64 564 38 HOH HOH . D 4 HOH A 65 565 39 HOH HOH . D 4 HOH A 66 566 40 HOH HOH . D 4 HOH A 67 567 41 HOH HOH . D 4 HOH A 68 568 42 HOH HOH . D 4 HOH A 69 569 43 HOH HOH . D 4 HOH A 70 570 44 HOH HOH . D 4 HOH A 71 571 45 HOH HOH . D 4 HOH A 72 572 48 HOH HOH . D 4 HOH A 73 573 49 HOH HOH . D 4 HOH A 74 574 50 HOH HOH . D 4 HOH A 75 575 51 HOH HOH . D 4 HOH A 76 576 52 HOH HOH . D 4 HOH A 77 577 54 HOH HOH . D 4 HOH A 78 578 55 HOH HOH . D 4 HOH A 79 579 56 HOH HOH . D 4 HOH A 80 580 57 HOH HOH . D 4 HOH A 81 581 59 HOH HOH . D 4 HOH A 82 582 60 HOH HOH . D 4 HOH A 83 583 61 HOH HOH . D 4 HOH A 84 584 63 HOH HOH . D 4 HOH A 85 585 65 HOH HOH . D 4 HOH A 86 586 66 HOH HOH . D 4 HOH A 87 587 67 HOH HOH . D 4 HOH A 88 588 68 HOH HOH . D 4 HOH A 89 589 69 HOH HOH . D 4 HOH A 90 590 70 HOH HOH . D 4 HOH A 91 591 71 HOH HOH . D 4 HOH A 92 592 73 HOH HOH . D 4 HOH A 93 593 75 HOH HOH . D 4 HOH A 94 594 76 HOH HOH . D 4 HOH A 95 595 77 HOH HOH . D 4 HOH A 96 596 78 HOH HOH . D 4 HOH A 97 597 79 HOH HOH . D 4 HOH A 98 598 80 HOH HOH . D 4 HOH A 99 599 82 HOH HOH . D 4 HOH A 100 600 83 HOH HOH . D 4 HOH A 101 601 84 HOH HOH . D 4 HOH A 102 602 86 HOH HOH . D 4 HOH A 103 603 87 HOH HOH . D 4 HOH A 104 604 89 HOH HOH . D 4 HOH A 105 605 94 HOH HOH . D 4 HOH A 106 606 99 HOH HOH . D 4 HOH A 107 607 103 HOH HOH . D 4 HOH A 108 608 104 HOH HOH . D 4 HOH A 109 609 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 WDU . . . C 3 -2.138 23.106 31.2 1 19.12 ? C15 WDU 402 A 1 HETATM 2 C C16 WDU . . . C 3 -2.74 23.934 33.326 1 21.1 ? C16 WDU 402 A 1 HETATM 3 C C17 WDU . . . C 3 -2.46 21.817 31.545 1 19.63 ? C17 WDU 402 A 1 HETATM 4 C C18 WDU . . . C 3 -3.059 22.638 33.702 1 20.92 ? C18 WDU 402 A 1 HETATM 5 C C14 WDU . . . C 3 -2.273 24.175 32.056 1 20.01 ? C14 WDU 402 A 1 HETATM 6 C C19 WDU . . . C 3 -2.928 21.591 32.823 1 22.04 ? C19 WDU 402 A 1 HETATM 7 C C2 WDU . . . C 3 -2.289 29.118 35.143 1 19.43 ? C2 WDU 402 A 1 HETATM 8 C C1 WDU . . . C 3 -1.849 28.307 34.061 1 17.73 ? C1 WDU 402 A 1 HETATM 9 C C5 WDU . . . C 3 -1.167 29.542 35.811 1 20.72 ? C5 WDU 402 A 1 HETATM 10 C C4 WDU . . . C 3 -2.44 27.514 32.989 1 17.35 ? C4 WDU 402 A 1 HETATM 11 C C11 WDU . . . C 3 -1.884 25.547 31.579 1 19.73 ? C11 WDU 402 A 1 HETATM 12 N N3 WDU . . . C 3 -0.52 28.258 34.134 1 17.27 ? N3 WDU 402 A 1 HETATM 13 N N7 WDU . . . C 3 -0.114 28.999 35.16 1 17.43 ? N7 WDU 402 A 1 HETATM 14 N N8 WDU . . . C 3 -1.631 26.448 32.697 1 16.09 ? N8 WDU 402 A 1 HETATM 15 N N10 WDU . . . C 3 -0.977 30.312 36.998 1 24.07 ? N10 WDU 402 A 1 HETATM 16 O O13 WDU . . . C 3 0.177 30.41 37.386 1 23.08 ? O13 WDU 402 A 1 HETATM 17 O O9 WDU . . . C 3 -3.489 27.603 32.343 1 19.07 ? O9 WDU 402 A 1 HETATM 18 O O12 WDU . . . C 3 -1.955 30.638 37.704 1 27.48 ? O12 WDU 402 A 1 HETATM 19 CL CL1 WDU . . . C 3 -3.39 19.985 33.317 1 27.14 ? CL1 WDU 402 A 1 HETATM 20 CL CL6 WDU . . . C 3 -3.878 29.506 35.579 1 26.58 ? CL6 WDU 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #