data_4WDW # _model_server_result.job_id s2l3JA0lzT-ES5ZTOFXHlQ _model_server_result.datetime_utc '2024-12-25 04:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4WDW # _exptl.entry_id 4WDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.03 _cell.angle_beta 69.72 _cell.angle_gamma 79.11 _cell.entry_id 4WDW _cell.length_a 55.129 _cell.length_b 57.917 _cell.length_c 60.333 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 4WDW _atom_sites.fract_transf_matrix[1][1] 0.018139 _atom_sites.fract_transf_matrix[1][2] -0.003491 _atom_sites.fract_transf_matrix[1][3] -0.006392 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017583 _atom_sites.fract_transf_matrix[2][3] -0.001735 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 WDW A 1 402 1 WDW UNL . E 2 NAP B 1 401 1 NAP NAP . F 3 WDW B 1 402 1 WDW UNL . G 4 HOH A 1 501 136 HOH HOH . G 4 HOH A 2 502 118 HOH HOH . G 4 HOH A 3 503 100 HOH HOH . G 4 HOH A 4 504 30 HOH HOH . G 4 HOH A 5 505 141 HOH HOH . G 4 HOH A 6 506 137 HOH HOH . G 4 HOH A 7 507 104 HOH HOH . G 4 HOH A 8 508 34 HOH HOH . G 4 HOH A 9 509 24 HOH HOH . G 4 HOH A 10 510 19 HOH HOH . G 4 HOH A 11 511 65 HOH HOH . G 4 HOH A 12 512 50 HOH HOH . G 4 HOH A 13 513 62 HOH HOH . G 4 HOH A 14 514 1 HOH HOH . G 4 HOH A 15 515 3 HOH HOH . G 4 HOH A 16 516 8 HOH HOH . G 4 HOH A 17 517 9 HOH HOH . G 4 HOH A 18 518 11 HOH HOH . G 4 HOH A 19 519 12 HOH HOH . G 4 HOH A 20 520 13 HOH HOH . G 4 HOH A 21 521 17 HOH HOH . G 4 HOH A 22 522 20 HOH HOH . G 4 HOH A 23 523 21 HOH HOH . G 4 HOH A 24 524 25 HOH HOH . G 4 HOH A 25 525 26 HOH HOH . G 4 HOH A 26 526 27 HOH HOH . G 4 HOH A 27 527 28 HOH HOH . G 4 HOH A 28 528 35 HOH HOH . G 4 HOH A 29 529 36 HOH HOH . G 4 HOH A 30 530 37 HOH HOH . G 4 HOH A 31 531 39 HOH HOH . G 4 HOH A 32 532 40 HOH HOH . G 4 HOH A 33 533 41 HOH HOH . G 4 HOH A 34 534 42 HOH HOH . G 4 HOH A 35 535 43 HOH HOH . G 4 HOH A 36 536 44 HOH HOH . G 4 HOH A 37 537 45 HOH HOH . G 4 HOH A 38 538 47 HOH HOH . G 4 HOH A 39 539 48 HOH HOH . G 4 HOH A 40 540 52 HOH HOH . G 4 HOH A 41 541 53 HOH HOH . G 4 HOH A 42 542 59 HOH HOH . G 4 HOH A 43 543 68 HOH HOH . G 4 HOH A 44 544 69 HOH HOH . G 4 HOH A 45 545 70 HOH HOH . G 4 HOH A 46 546 72 HOH HOH . G 4 HOH A 47 547 73 HOH HOH . G 4 HOH A 48 548 74 HOH HOH . G 4 HOH A 49 549 75 HOH HOH . G 4 HOH A 50 550 76 HOH HOH . G 4 HOH A 51 551 77 HOH HOH . G 4 HOH A 52 552 78 HOH HOH . G 4 HOH A 53 553 86 HOH HOH . G 4 HOH A 54 554 88 HOH HOH . G 4 HOH A 55 555 91 HOH HOH . G 4 HOH A 56 556 93 HOH HOH . G 4 HOH A 57 557 94 HOH HOH . G 4 HOH A 58 558 97 HOH HOH . G 4 HOH A 59 559 99 HOH HOH . G 4 HOH A 60 560 102 HOH HOH . G 4 HOH A 61 561 103 HOH HOH . G 4 HOH A 62 562 106 HOH HOH . G 4 HOH A 63 563 109 HOH HOH . G 4 HOH A 64 564 110 HOH HOH . G 4 HOH A 65 565 119 HOH HOH . G 4 HOH A 66 566 121 HOH HOH . G 4 HOH A 67 567 123 HOH HOH . G 4 HOH A 68 568 128 HOH HOH . G 4 HOH A 69 569 129 HOH HOH . G 4 HOH A 70 570 131 HOH HOH . G 4 HOH A 71 571 132 HOH HOH . G 4 HOH A 72 572 139 HOH HOH . G 4 HOH A 73 573 143 HOH HOH . G 4 HOH A 74 574 144 HOH HOH . H 4 HOH B 1 501 63 HOH HOH . H 4 HOH B 2 502 54 HOH HOH . H 4 HOH B 3 503 82 HOH HOH . H 4 HOH B 4 504 84 HOH HOH . H 4 HOH B 5 505 85 HOH HOH . H 4 HOH B 6 506 56 HOH HOH . H 4 HOH B 7 507 122 HOH HOH . H 4 HOH B 8 508 2 HOH HOH . H 4 HOH B 9 509 4 HOH HOH . H 4 HOH B 10 510 5 HOH HOH . H 4 HOH B 11 511 6 HOH HOH . H 4 HOH B 12 512 7 HOH HOH . H 4 HOH B 13 513 10 HOH HOH . H 4 HOH B 14 514 14 HOH HOH . H 4 HOH B 15 515 15 HOH HOH . H 4 HOH B 16 516 16 HOH HOH . H 4 HOH B 17 517 18 HOH HOH . H 4 HOH B 18 518 22 HOH HOH . H 4 HOH B 19 519 23 HOH HOH . H 4 HOH B 20 520 29 HOH HOH . H 4 HOH B 21 521 31 HOH HOH . H 4 HOH B 22 522 32 HOH HOH . H 4 HOH B 23 523 33 HOH HOH . H 4 HOH B 24 524 38 HOH HOH . H 4 HOH B 25 525 46 HOH HOH . H 4 HOH B 26 526 49 HOH HOH . H 4 HOH B 27 527 51 HOH HOH . H 4 HOH B 28 528 55 HOH HOH . H 4 HOH B 29 529 57 HOH HOH . H 4 HOH B 30 530 58 HOH HOH . H 4 HOH B 31 531 60 HOH HOH . H 4 HOH B 32 532 61 HOH HOH . H 4 HOH B 33 533 64 HOH HOH . H 4 HOH B 34 534 66 HOH HOH . H 4 HOH B 35 535 67 HOH HOH . H 4 HOH B 36 536 71 HOH HOH . H 4 HOH B 37 537 79 HOH HOH . H 4 HOH B 38 538 80 HOH HOH . H 4 HOH B 39 539 81 HOH HOH . H 4 HOH B 40 540 83 HOH HOH . H 4 HOH B 41 541 87 HOH HOH . H 4 HOH B 42 542 89 HOH HOH . H 4 HOH B 43 543 90 HOH HOH . H 4 HOH B 44 544 92 HOH HOH . H 4 HOH B 45 545 95 HOH HOH . H 4 HOH B 46 546 96 HOH HOH . H 4 HOH B 47 547 98 HOH HOH . H 4 HOH B 48 548 101 HOH HOH . H 4 HOH B 49 549 105 HOH HOH . H 4 HOH B 50 550 107 HOH HOH . H 4 HOH B 51 551 108 HOH HOH . H 4 HOH B 52 552 111 HOH HOH . H 4 HOH B 53 553 112 HOH HOH . H 4 HOH B 54 554 113 HOH HOH . H 4 HOH B 55 555 114 HOH HOH . H 4 HOH B 56 556 115 HOH HOH . H 4 HOH B 57 557 116 HOH HOH . H 4 HOH B 58 558 117 HOH HOH . H 4 HOH B 59 559 120 HOH HOH . H 4 HOH B 60 560 124 HOH HOH . H 4 HOH B 61 561 125 HOH HOH . H 4 HOH B 62 562 126 HOH HOH . H 4 HOH B 63 563 127 HOH HOH . H 4 HOH B 64 564 130 HOH HOH . H 4 HOH B 65 565 133 HOH HOH . H 4 HOH B 66 566 134 HOH HOH . H 4 HOH B 67 567 135 HOH HOH . H 4 HOH B 68 568 138 HOH HOH . H 4 HOH B 69 569 140 HOH HOH . H 4 HOH B 70 570 142 HOH HOH . H 4 HOH B 71 571 145 HOH HOH . H 4 HOH B 72 572 146 HOH HOH . H 4 HOH B 73 573 147 HOH HOH . H 4 HOH B 74 574 148 HOH HOH . H 4 HOH B 75 575 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 -13.948 13.86 10.093 1 25.12 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . C 2 -14.604 15.232 10.21 1 26.35 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . C 2 -12.574 13.666 9.461 1 26.99 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . C 2 -14.907 12.787 9.338 1 27.8 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . C 2 -16.356 12.871 9.443 1 28.37 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . C 2 -16.981 11.824 8.51 1 29.57 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . C 2 -16.704 12.117 7.142 1 28.41 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . C 2 -16.366 10.484 8.696 1 32.94 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . C 2 -17.125 9.86 9.689 1 28.86 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . C 2 -16.464 9.786 7.344 1 33.8 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . C 2 -17.361 8.682 7.458 1 31.16 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . C 2 -16.943 10.901 6.412 1 29.48 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . C 2 -16.212 11.04 5.162 1 30.86 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . C 2 -14.845 10.956 4.988 1 31.91 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . C 2 -14.516 11.167 3.72 1 33.28 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . C 2 -15.71 11.375 3.034 1 29.3 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . C 2 -16.014 11.634 1.684 1 31.59 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . C 2 -15.013 11.701 0.692 1 25.91 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . C 2 -17.311 11.797 1.306 1 31.65 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . C 2 -18.235 11.693 2.284 1 30.27 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . C 2 -18.056 11.451 3.595 1 31.11 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . C 2 -16.764 11.308 3.923 1 32.71 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . C 2 -14.061 13.108 11.503 1 24 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . C 2 -13.44 13.271 12.963 1 27.91 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . C 2 -14.272 14.323 13.68 1 31.73 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . C 2 -13.366 11.901 13.561 1 24.49 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . C 2 -11.983 14.001 12.676 1 29.58 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . C 2 -10.839 13.29 12.131 1 23.4 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . C 2 -9.798 12.84 13.112 1 24.38 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . C 2 -9.378 13.921 13.906 1 23.75 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . C 2 -10.266 11.824 14.107 1 26.91 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . C 2 -10.469 10.508 13.511 1 29.9 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . C 2 -9.169 11.958 15.133 1 28.88 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . C 2 -8.027 11.319 14.513 1 27.5 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . C 2 -8.925 13.482 15.17 1 27.54 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . C 2 -9.662 14.237 16.237 1 27.71 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . C 2 -8.943 14.811 17.208 1 29.86 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . C 2 -9.598 15.51 18.203 1 28.08 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . C 2 -8.83 16.159 19.266 1 26.28 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . C 2 -9.369 16.454 20.315 1 25.39 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . C 2 -7.501 16.359 19.014 1 25.24 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . C 2 -10.974 15.593 18.202 1 30.15 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . C 2 -11.703 14.997 17.191 1 25.67 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . C 2 -11.001 14.319 16.214 1 28.15 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . C 2 -16.842 7.218 6.88 1 35.14 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . C 2 -15.986 6.732 8.024 1 34.45 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . C 2 -18.127 6.453 6.871 1 37.03 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . C 2 -16.222 7.462 5.54 1 29.73 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #