data_4WDW # _model_server_result.job_id vmqIB-JTTT12bhRb2Szm8A _model_server_result.datetime_utc '2024-10-18 04:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4WDW # _exptl.entry_id 4WDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.03 _cell.angle_beta 69.72 _cell.angle_gamma 79.11 _cell.entry_id 4WDW _cell.length_a 55.129 _cell.length_b 57.917 _cell.length_c 60.333 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 4WDW _atom_sites.fract_transf_matrix[1][1] 0.018139 _atom_sites.fract_transf_matrix[1][2] -0.003491 _atom_sites.fract_transf_matrix[1][3] -0.006392 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017583 _atom_sites.fract_transf_matrix[2][3] -0.001735 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 WDW A 1 402 1 WDW UNL . E 2 NAP B 1 401 1 NAP NAP . F 3 WDW B 1 402 1 WDW UNL . G 4 HOH A 1 501 136 HOH HOH . G 4 HOH A 2 502 118 HOH HOH . G 4 HOH A 3 503 100 HOH HOH . G 4 HOH A 4 504 30 HOH HOH . G 4 HOH A 5 505 141 HOH HOH . G 4 HOH A 6 506 137 HOH HOH . G 4 HOH A 7 507 104 HOH HOH . G 4 HOH A 8 508 34 HOH HOH . G 4 HOH A 9 509 24 HOH HOH . G 4 HOH A 10 510 19 HOH HOH . G 4 HOH A 11 511 65 HOH HOH . G 4 HOH A 12 512 50 HOH HOH . G 4 HOH A 13 513 62 HOH HOH . G 4 HOH A 14 514 1 HOH HOH . G 4 HOH A 15 515 3 HOH HOH . G 4 HOH A 16 516 8 HOH HOH . G 4 HOH A 17 517 9 HOH HOH . G 4 HOH A 18 518 11 HOH HOH . G 4 HOH A 19 519 12 HOH HOH . G 4 HOH A 20 520 13 HOH HOH . G 4 HOH A 21 521 17 HOH HOH . G 4 HOH A 22 522 20 HOH HOH . G 4 HOH A 23 523 21 HOH HOH . G 4 HOH A 24 524 25 HOH HOH . G 4 HOH A 25 525 26 HOH HOH . G 4 HOH A 26 526 27 HOH HOH . G 4 HOH A 27 527 28 HOH HOH . G 4 HOH A 28 528 35 HOH HOH . G 4 HOH A 29 529 36 HOH HOH . G 4 HOH A 30 530 37 HOH HOH . G 4 HOH A 31 531 39 HOH HOH . G 4 HOH A 32 532 40 HOH HOH . G 4 HOH A 33 533 41 HOH HOH . G 4 HOH A 34 534 42 HOH HOH . G 4 HOH A 35 535 43 HOH HOH . G 4 HOH A 36 536 44 HOH HOH . G 4 HOH A 37 537 45 HOH HOH . G 4 HOH A 38 538 47 HOH HOH . G 4 HOH A 39 539 48 HOH HOH . G 4 HOH A 40 540 52 HOH HOH . G 4 HOH A 41 541 53 HOH HOH . G 4 HOH A 42 542 59 HOH HOH . G 4 HOH A 43 543 68 HOH HOH . G 4 HOH A 44 544 69 HOH HOH . G 4 HOH A 45 545 70 HOH HOH . G 4 HOH A 46 546 72 HOH HOH . G 4 HOH A 47 547 73 HOH HOH . G 4 HOH A 48 548 74 HOH HOH . G 4 HOH A 49 549 75 HOH HOH . G 4 HOH A 50 550 76 HOH HOH . G 4 HOH A 51 551 77 HOH HOH . G 4 HOH A 52 552 78 HOH HOH . G 4 HOH A 53 553 86 HOH HOH . G 4 HOH A 54 554 88 HOH HOH . G 4 HOH A 55 555 91 HOH HOH . G 4 HOH A 56 556 93 HOH HOH . G 4 HOH A 57 557 94 HOH HOH . G 4 HOH A 58 558 97 HOH HOH . G 4 HOH A 59 559 99 HOH HOH . G 4 HOH A 60 560 102 HOH HOH . G 4 HOH A 61 561 103 HOH HOH . G 4 HOH A 62 562 106 HOH HOH . G 4 HOH A 63 563 109 HOH HOH . G 4 HOH A 64 564 110 HOH HOH . G 4 HOH A 65 565 119 HOH HOH . G 4 HOH A 66 566 121 HOH HOH . G 4 HOH A 67 567 123 HOH HOH . G 4 HOH A 68 568 128 HOH HOH . G 4 HOH A 69 569 129 HOH HOH . G 4 HOH A 70 570 131 HOH HOH . G 4 HOH A 71 571 132 HOH HOH . G 4 HOH A 72 572 139 HOH HOH . G 4 HOH A 73 573 143 HOH HOH . G 4 HOH A 74 574 144 HOH HOH . H 4 HOH B 1 501 63 HOH HOH . H 4 HOH B 2 502 54 HOH HOH . H 4 HOH B 3 503 82 HOH HOH . H 4 HOH B 4 504 84 HOH HOH . H 4 HOH B 5 505 85 HOH HOH . H 4 HOH B 6 506 56 HOH HOH . H 4 HOH B 7 507 122 HOH HOH . H 4 HOH B 8 508 2 HOH HOH . H 4 HOH B 9 509 4 HOH HOH . H 4 HOH B 10 510 5 HOH HOH . H 4 HOH B 11 511 6 HOH HOH . H 4 HOH B 12 512 7 HOH HOH . H 4 HOH B 13 513 10 HOH HOH . H 4 HOH B 14 514 14 HOH HOH . H 4 HOH B 15 515 15 HOH HOH . H 4 HOH B 16 516 16 HOH HOH . H 4 HOH B 17 517 18 HOH HOH . H 4 HOH B 18 518 22 HOH HOH . H 4 HOH B 19 519 23 HOH HOH . H 4 HOH B 20 520 29 HOH HOH . H 4 HOH B 21 521 31 HOH HOH . H 4 HOH B 22 522 32 HOH HOH . H 4 HOH B 23 523 33 HOH HOH . H 4 HOH B 24 524 38 HOH HOH . H 4 HOH B 25 525 46 HOH HOH . H 4 HOH B 26 526 49 HOH HOH . H 4 HOH B 27 527 51 HOH HOH . H 4 HOH B 28 528 55 HOH HOH . H 4 HOH B 29 529 57 HOH HOH . H 4 HOH B 30 530 58 HOH HOH . H 4 HOH B 31 531 60 HOH HOH . H 4 HOH B 32 532 61 HOH HOH . H 4 HOH B 33 533 64 HOH HOH . H 4 HOH B 34 534 66 HOH HOH . H 4 HOH B 35 535 67 HOH HOH . H 4 HOH B 36 536 71 HOH HOH . H 4 HOH B 37 537 79 HOH HOH . H 4 HOH B 38 538 80 HOH HOH . H 4 HOH B 39 539 81 HOH HOH . H 4 HOH B 40 540 83 HOH HOH . H 4 HOH B 41 541 87 HOH HOH . H 4 HOH B 42 542 89 HOH HOH . H 4 HOH B 43 543 90 HOH HOH . H 4 HOH B 44 544 92 HOH HOH . H 4 HOH B 45 545 95 HOH HOH . H 4 HOH B 46 546 96 HOH HOH . H 4 HOH B 47 547 98 HOH HOH . H 4 HOH B 48 548 101 HOH HOH . H 4 HOH B 49 549 105 HOH HOH . H 4 HOH B 50 550 107 HOH HOH . H 4 HOH B 51 551 108 HOH HOH . H 4 HOH B 52 552 111 HOH HOH . H 4 HOH B 53 553 112 HOH HOH . H 4 HOH B 54 554 113 HOH HOH . H 4 HOH B 55 555 114 HOH HOH . H 4 HOH B 56 556 115 HOH HOH . H 4 HOH B 57 557 116 HOH HOH . H 4 HOH B 58 558 117 HOH HOH . H 4 HOH B 59 559 120 HOH HOH . H 4 HOH B 60 560 124 HOH HOH . H 4 HOH B 61 561 125 HOH HOH . H 4 HOH B 62 562 126 HOH HOH . H 4 HOH B 63 563 127 HOH HOH . H 4 HOH B 64 564 130 HOH HOH . H 4 HOH B 65 565 133 HOH HOH . H 4 HOH B 66 566 134 HOH HOH . H 4 HOH B 67 567 135 HOH HOH . H 4 HOH B 68 568 138 HOH HOH . H 4 HOH B 69 569 140 HOH HOH . H 4 HOH B 70 570 142 HOH HOH . H 4 HOH B 71 571 145 HOH HOH . H 4 HOH B 72 572 146 HOH HOH . H 4 HOH B 73 573 147 HOH HOH . H 4 HOH B 74 574 148 HOH HOH . H 4 HOH B 75 575 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 -3.03 -16.458 -19.301 1 21.5 ? PA NAP 401 B 1 HETATM 2 O O1A NAP . . . E 2 -3.295 -14.957 -19.348 1 20.16 ? O1A NAP 401 B 1 HETATM 3 O O2A NAP . . . E 2 -1.64 -16.948 -19.677 1 23.89 ? O2A NAP 401 B 1 HETATM 4 O O5B NAP . . . E 2 -4.004 -17.313 -20.27 1 27.61 ? O5B NAP 401 B 1 HETATM 5 C C5B NAP . . . E 2 -5.375 -17.266 -20.049 1 30.15 ? C5B NAP 401 B 1 HETATM 6 C C4B NAP . . . E 2 -6.086 -18.103 -21.093 1 28.1 ? C4B NAP 401 B 1 HETATM 7 O O4B NAP . . . E 2 -5.531 -17.928 -22.386 1 27.96 ? O4B NAP 401 B 1 HETATM 8 C C3B NAP . . . E 2 -5.852 -19.555 -20.788 1 31.22 ? C3B NAP 401 B 1 HETATM 9 O O3B NAP . . . E 2 -6.93 -19.897 -19.963 1 36.24 ? O3B NAP 401 B 1 HETATM 10 C C2B NAP . . . E 2 -5.869 -20.254 -22.154 1 29.22 ? C2B NAP 401 B 1 HETATM 11 O O2B NAP . . . E 2 -7.009 -21.088 -22.297 1 30.1 ? O2B NAP 401 B 1 HETATM 12 C C1B NAP . . . E 2 -5.972 -19.078 -23.09 1 26.98 ? C1B NAP 401 B 1 HETATM 13 N N9A NAP . . . E 2 -5.096 -19.174 -24.227 1 24.49 ? N9A NAP 401 B 1 HETATM 14 C C8A NAP . . . E 2 -3.819 -19.639 -24.254 1 24.7 ? C8A NAP 401 B 1 HETATM 15 N N7A NAP . . . E 2 -3.304 -19.568 -25.479 1 26 ? N7A NAP 401 B 1 HETATM 16 C C5A NAP . . . E 2 -4.313 -19.091 -26.27 1 22.5 ? C5A NAP 401 B 1 HETATM 17 C C6A NAP . . . E 2 -4.352 -18.849 -27.621 1 25.39 ? C6A NAP 401 B 1 HETATM 18 N N6A NAP . . . E 2 -3.247 -19.088 -28.461 1 22.76 ? N6A NAP 401 B 1 HETATM 19 N N1A NAP . . . E 2 -5.508 -18.376 -28.095 1 26.44 ? N1A NAP 401 B 1 HETATM 20 C C2A NAP . . . E 2 -6.538 -18.179 -27.248 1 28.98 ? C2A NAP 401 B 1 HETATM 21 N N3A NAP . . . E 2 -6.604 -18.374 -25.926 1 25.87 ? N3A NAP 401 B 1 HETATM 22 C C4A NAP . . . E 2 -5.432 -18.827 -25.508 1 24.47 ? C4A NAP 401 B 1 HETATM 23 O O3 NAP . . . E 2 -3.422 -17.036 -17.862 1 23.93 ? O3 NAP 401 B 1 HETATM 24 P PN NAP . . . E 2 -2.95 -17.051 -16.319 1 24.38 ? PN NAP 401 B 1 HETATM 25 O O1N NAP . . . E 2 -3.702 -15.933 -15.646 1 30.07 ? O1N NAP 401 B 1 HETATM 26 O O2N NAP . . . E 2 -3.158 -18.442 -15.753 1 30.02 ? O2N NAP 401 B 1 HETATM 27 O O5D NAP . . . E 2 -1.335 -16.728 -16.35 1 26.52 ? O5D NAP 401 B 1 HETATM 28 C C5D NAP . . . E 2 -0.435 -17.738 -16.837 1 21.45 ? C5D NAP 401 B 1 HETATM 29 C C4D NAP . . . E 2 0.543 -18.173 -15.731 1 22.33 ? C4D NAP 401 B 1 HETATM 30 O O4D NAP . . . E 2 0.954 -17.118 -14.911 1 20.64 ? O4D NAP 401 B 1 HETATM 31 C C3D NAP . . . E 2 -0.196 -19.021 -14.699 1 23.35 ? C3D NAP 401 B 1 HETATM 32 O O3D NAP . . . E 2 -0.579 -20.293 -15.178 1 19.27 ? O3D NAP 401 B 1 HETATM 33 C C2D NAP . . . E 2 0.798 -19.077 -13.564 1 20.88 ? C2D NAP 401 B 1 HETATM 34 O O2D NAP . . . E 2 1.808 -19.966 -14.045 1 23.76 ? O2D NAP 401 B 1 HETATM 35 C C1D NAP . . . E 2 1.256 -17.62 -13.607 1 20.75 ? C1D NAP 401 B 1 HETATM 36 N N1N NAP . . . E 2 0.571 -16.748 -12.619 1 23.46 ? N1N NAP 401 B 1 HETATM 37 C C2N NAP . . . E 2 1.315 -16.323 -11.575 1 21.71 ? C2N NAP 401 B 1 HETATM 38 C C3N NAP . . . E 2 0.666 -15.495 -10.673 1 21.23 ? C3N NAP 401 B 1 HETATM 39 C C7N NAP . . . E 2 1.427 -14.973 -9.531 1 20.63 ? C7N NAP 401 B 1 HETATM 40 O O7N NAP . . . E 2 0.843 -14.53 -8.56 1 18.53 ? O7N NAP 401 B 1 HETATM 41 N N7N NAP . . . E 2 2.791 -14.972 -9.651 1 19.49 ? N7N NAP 401 B 1 HETATM 42 C C4N NAP . . . E 2 -0.659 -15.137 -10.823 1 20.19 ? C4N NAP 401 B 1 HETATM 43 C C5N NAP . . . E 2 -1.387 -15.589 -11.902 1 21.11 ? C5N NAP 401 B 1 HETATM 44 C C6N NAP . . . E 2 -0.714 -16.403 -12.796 1 21.72 ? C6N NAP 401 B 1 HETATM 45 P P2B NAP . . . E 2 -6.855 -22.685 -22.69 1 32.38 ? P2B NAP 401 B 1 HETATM 46 O O1X NAP . . . E 2 -6.194 -23.321 -21.498 1 25.7 ? O1X NAP 401 B 1 HETATM 47 O O2X NAP . . . E 2 -8.281 -23.078 -22.886 1 40.59 ? O2X NAP 401 B 1 HETATM 48 O O3X NAP . . . E 2 -6.057 -22.697 -23.959 1 31.5 ? O3X NAP 401 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #