data_4WE1 # _model_server_result.job_id AWVkxkGqr_LwHeqYw473cA _model_server_result.datetime_utc '2025-01-25 15:20:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4we1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4WE1 # _exptl.entry_id 4WE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.399 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.08 _cell.angle_gamma 90 _cell.entry_id 4WE1 _cell.length_a 220.271 _cell.length_b 67.218 _cell.length_c 102.483 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 187 A ASP 185 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 A OD1 ASP 188 A ASP 186 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A OD1 ASP 445 A ASP 443 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc4 A OE2 GLU 480 A GLU 478 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 A OD1 ASP 500 A ASP 498 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc6 A OD2 ASP 500 A ASP 498 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? # _chem_comp.formula 'C23 H17 N3 O4' _chem_comp.formula_weight 399.399 _chem_comp.id 3LQ _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C00 3LQ doub 1 n y C01 C02 3LQ sing 2 n y C00 C05 3LQ sing 3 n y C02 C03 3LQ doub 4 n y O0Q C0K 3LQ doub 5 n n C0D O0B 3LQ sing 6 n n C0D C0E 3LQ sing 7 n n C05 O0B 3LQ sing 8 n n C05 C04 3LQ doub 9 n y C03 C04 3LQ sing 10 n y C04 O0A 3LQ sing 11 n n C0E N0H 3LQ sing 12 n n C0K N0H 3LQ sing 13 n n C0K N0M 3LQ sing 14 n n N0H C0P 3LQ sing 15 n n N0M C0N 3LQ sing 16 n n O0A CAH 3LQ sing 17 n n CAM CAH 3LQ doub 18 n y CAM CAL 3LQ sing 19 n y C0P C0O 3LQ doub 20 n n C0N O0S 3LQ doub 21 n n C0N C0O 3LQ sing 22 n n CAH CAI 3LQ sing 23 n y CAL CAK 3LQ doub 24 n y CAI CAY 3LQ doub 25 n y CAI CAJ 3LQ sing 26 n y CAY CAZ 3LQ sing 27 n y CAK CAJ 3LQ sing 28 n y CAJ CBB 3LQ doub 29 n y CAZ CBA 3LQ doub 30 n y CBB CBA 3LQ sing 31 n y CBA CBC 3LQ sing 32 n n CBC NBD 3LQ trip 33 n n C00 H1 3LQ sing 34 n n C01 H2 3LQ sing 35 n n C02 H3 3LQ sing 36 n n C03 H4 3LQ sing 37 n n C0D H5 3LQ sing 38 n n C0D H6 3LQ sing 39 n n C0E H7 3LQ sing 40 n n C0E H8 3LQ sing 41 n n N0M H9 3LQ sing 42 n n C0O H10 3LQ sing 43 n n C0P H11 3LQ sing 44 n n CAY H12 3LQ sing 45 n n CAZ H13 3LQ sing 46 n n CBB H14 3LQ sing 47 n n CAK H15 3LQ sing 48 n n CAL H16 3LQ sing 49 n n CAM H17 3LQ sing 50 n n # _atom_sites.entry_id 4WE1 _atom_sites.fract_transf_matrix[1][1] 0.00454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3LQ A 1 601 1 3LQ 600 . D 4 MG A 1 602 1 MG MG . E 4 MG A 1 603 3 MG MG . F 5 SO4 A 1 604 2 SO4 SO4 . G 5 SO4 A 1 605 3 SO4 SO4 . H 5 SO4 A 1 606 4 SO4 SO4 . I 5 SO4 A 1 607 5 SO4 SO4 . J 6 HOH A 1 701 62 HOH HOH . J 6 HOH A 2 702 65 HOH HOH . J 6 HOH A 3 703 54 HOH HOH . J 6 HOH A 4 704 109 HOH HOH . J 6 HOH A 5 705 7 HOH HOH . J 6 HOH A 6 706 8 HOH HOH . J 6 HOH A 7 707 11 HOH HOH . J 6 HOH A 8 708 12 HOH HOH . J 6 HOH A 9 709 15 HOH HOH . J 6 HOH A 10 710 17 HOH HOH . J 6 HOH A 11 711 20 HOH HOH . J 6 HOH A 12 712 23 HOH HOH . J 6 HOH A 13 713 24 HOH HOH . J 6 HOH A 14 714 26 HOH HOH . J 6 HOH A 15 715 27 HOH HOH . J 6 HOH A 16 716 31 HOH HOH . J 6 HOH A 17 717 33 HOH HOH . J 6 HOH A 18 718 34 HOH HOH . J 6 HOH A 19 719 37 HOH HOH . J 6 HOH A 20 720 38 HOH HOH . J 6 HOH A 21 721 43 HOH HOH . J 6 HOH A 22 722 46 HOH HOH . J 6 HOH A 23 723 48 HOH HOH . J 6 HOH A 24 724 50 HOH HOH . J 6 HOH A 25 725 56 HOH HOH . J 6 HOH A 26 726 57 HOH HOH . J 6 HOH A 27 727 58 HOH HOH . J 6 HOH A 28 728 59 HOH HOH . J 6 HOH A 29 729 63 HOH HOH . J 6 HOH A 30 730 67 HOH HOH . J 6 HOH A 31 731 71 HOH HOH . J 6 HOH A 32 732 72 HOH HOH . J 6 HOH A 33 733 74 HOH HOH . J 6 HOH A 34 734 75 HOH HOH . J 6 HOH A 35 735 78 HOH HOH . J 6 HOH A 36 736 79 HOH HOH . J 6 HOH A 37 737 81 HOH HOH . J 6 HOH A 38 738 82 HOH HOH . J 6 HOH A 39 739 83 HOH HOH . J 6 HOH A 40 740 88 HOH HOH . J 6 HOH A 41 741 97 HOH HOH . J 6 HOH A 42 742 103 HOH HOH . J 6 HOH A 43 743 105 HOH HOH . J 6 HOH A 44 744 108 HOH HOH . K 6 HOH B 1 501 106 HOH HOH . K 6 HOH B 2 502 41 HOH HOH . K 6 HOH B 3 503 85 HOH HOH . K 6 HOH B 4 504 2 HOH HOH . K 6 HOH B 5 505 5 HOH HOH . K 6 HOH B 6 506 9 HOH HOH . K 6 HOH B 7 507 10 HOH HOH . K 6 HOH B 8 508 13 HOH HOH . K 6 HOH B 9 509 14 HOH HOH . K 6 HOH B 10 510 18 HOH HOH . K 6 HOH B 11 511 19 HOH HOH . K 6 HOH B 12 512 21 HOH HOH . K 6 HOH B 13 513 22 HOH HOH . K 6 HOH B 14 514 25 HOH HOH . K 6 HOH B 15 515 30 HOH HOH . K 6 HOH B 16 516 32 HOH HOH . K 6 HOH B 17 517 35 HOH HOH . K 6 HOH B 18 518 39 HOH HOH . K 6 HOH B 19 519 42 HOH HOH . K 6 HOH B 20 520 45 HOH HOH . K 6 HOH B 21 521 47 HOH HOH . K 6 HOH B 22 522 49 HOH HOH . K 6 HOH B 23 523 51 HOH HOH . K 6 HOH B 24 524 52 HOH HOH . K 6 HOH B 25 525 55 HOH HOH . K 6 HOH B 26 526 64 HOH HOH . K 6 HOH B 27 527 80 HOH HOH . K 6 HOH B 28 528 86 HOH HOH . K 6 HOH B 29 529 89 HOH HOH . K 6 HOH B 30 530 90 HOH HOH . K 6 HOH B 31 531 93 HOH HOH . K 6 HOH B 32 532 95 HOH HOH . K 6 HOH B 33 533 96 HOH HOH . K 6 HOH B 34 534 98 HOH HOH . K 6 HOH B 35 535 99 HOH HOH . K 6 HOH B 36 536 100 HOH HOH . K 6 HOH B 37 537 101 HOH HOH . K 6 HOH B 38 538 102 HOH HOH . K 6 HOH B 39 539 104 HOH HOH . K 6 HOH B 40 540 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C00 3LQ . . . C 3 454.54 -12.709 115.4 1 50.44 ? C00 3LQ 601 A 1 HETATM 2 C C01 3LQ . . . C 3 455.687 -12.059 114.887 1 43.82 ? C01 3LQ 601 A 1 HETATM 3 C C02 3LQ . . . C 3 456.748 -11.689 115.744 1 39.99 ? C02 3LQ 601 A 1 HETATM 4 C C03 3LQ . . . C 3 456.67 -11.963 117.123 1 43.58 ? C03 3LQ 601 A 1 HETATM 5 C C04 3LQ . . . C 3 455.519 -12.611 117.642 1 46.52 ? C04 3LQ 601 A 1 HETATM 6 C C05 3LQ . . . C 3 454.444 -12.992 116.795 1 45.21 ? C05 3LQ 601 A 1 HETATM 7 O O0A 3LQ . . . C 3 455.446 -12.878 118.985 1 38.04 ? O0A 3LQ 601 A 1 HETATM 8 O O0B 3LQ . . . C 3 453.388 -13.623 117.428 1 44.2 ? O0B 3LQ 601 A 1 HETATM 9 C C0D 3LQ . . . C 3 452.19 -14.052 116.781 1 45.54 ? C0D 3LQ 601 A 1 HETATM 10 C C0E 3LQ . . . C 3 451.446 -14.958 117.795 1 39.58 ? C0E 3LQ 601 A 1 HETATM 11 N N0H 3LQ . . . C 3 452.301 -15.978 118.461 1 50.6 ? N0H 3LQ 601 A 1 HETATM 12 C C0K 3LQ . . . C 3 452.712 -17.171 117.892 1 49.79 ? C0K 3LQ 601 A 1 HETATM 13 N N0M 3LQ . . . C 3 453.495 -17.969 118.665 1 50.3 ? N0M 3LQ 601 A 1 HETATM 14 C C0N 3LQ . . . C 3 453.931 -17.741 119.927 1 53.47 ? C0N 3LQ 601 A 1 HETATM 15 C C0O 3LQ . . . C 3 453.491 -16.471 120.512 1 49.12 ? C0O 3LQ 601 A 1 HETATM 16 C C0P 3LQ . . . C 3 452.703 -15.636 119.784 1 46.32 ? C0P 3LQ 601 A 1 HETATM 17 O O0Q 3LQ . . . C 3 452.416 -17.542 116.76 1 51.58 ? O0Q 3LQ 601 A 1 HETATM 18 O O0S 3LQ . . . C 3 454.641 -18.555 120.511 1 52.84 ? O0S 3LQ 601 A 1 HETATM 19 C CAH 3LQ . . . C 3 455.231 -11.814 119.944 1 44.03 ? CAH 3LQ 601 A 1 HETATM 20 C CAI 3LQ . . . C 3 455.753 -11.976 121.254 1 46.37 ? CAI 3LQ 601 A 1 HETATM 21 C CAY 3LQ . . . C 3 456.482 -13.188 121.609 1 47.29 ? CAY 3LQ 601 A 1 HETATM 22 C CAZ 3LQ . . . C 3 456.979 -13.334 122.872 1 50.07 ? CAZ 3LQ 601 A 1 HETATM 23 C CBA 3LQ . . . C 3 456.773 -12.298 123.858 1 47.36 ? CBA 3LQ 601 A 1 HETATM 24 C CBC 3LQ . . . C 3 457.378 -12.461 125.24 1 51.5 ? CBC 3LQ 601 A 1 HETATM 25 N NBD 3LQ . . . C 3 457.902 -12.574 126.266 1 56.35 ? NBD 3LQ 601 A 1 HETATM 26 C CBB 3LQ . . . C 3 456.094 -11.139 123.525 1 51.51 ? CBB 3LQ 601 A 1 HETATM 27 C CAJ 3LQ . . . C 3 455.566 -10.976 122.196 1 51.48 ? CAJ 3LQ 601 A 1 HETATM 28 C CAK 3LQ . . . C 3 454.858 -9.799 121.843 1 49.34 ? CAK 3LQ 601 A 1 HETATM 29 C CAL 3LQ . . . C 3 454.346 -9.64 120.547 1 47.09 ? CAL 3LQ 601 A 1 HETATM 30 C CAM 3LQ . . . C 3 454.534 -10.649 119.594 1 43.9 ? CAM 3LQ 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 30 #