data_4WEB
#
_model_server_result.job_id            j5ZDHxrE9BGw693j_o6d9g 
_model_server_result.datetime_utc      '2024-11-24 19:48:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4web 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":702}' 
#
_entry.id    4WEB 
#
_exptl.entry_id    4WEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WEB 
_cell.length_a            85.96 
_cell.length_b            194.57 
_cell.length_c            37.92 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 39 E CYS 488 1_555 A SG CYS 175 E CYS 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf2 A SG CYS 47 E CYS 496 1_555 A SG CYS 117 E CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf3 A SG CYS 61 E CYS 510 1_555 A SG CYS 105 E CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 122 E CYS 571 1_555 A SG CYS 152 E CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 162 E CYS 611 1_555 A SG CYS 199 E CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
disulf ? disulf6 B SG CYS 41 H CYS 22 1_555 B SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf7 B SG CYS 164 H CYS 145 1_555 B SG CYS 219 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf8 C SG CYS 43 L CYS 23 1_555 C SG CYS 114 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf9 C SG CYS 160 L CYS 140 1_555 C SG CYS 220 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 A ND2 ASN 109 E ASN 558 1_555 D C1 NAG . E NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? 
covale ? covale2 A ND2 ASN 200 E ASN 649 1_555 E C1 NAG . E NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.553 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 242 n n 
C1 O1 NAG sing 243 n n 
C1 O5 NAG sing 244 n n 
C1 H1 NAG sing 245 n n 
C2 C3 NAG sing 246 n n 
C2 N2 NAG sing 247 n n 
C2 H2 NAG sing 248 n n 
C3 C4 NAG sing 249 n n 
C3 O3 NAG sing 250 n n 
C3 H3 NAG sing 251 n n 
C4 C5 NAG sing 252 n n 
C4 O4 NAG sing 253 n n 
C4 H4 NAG sing 254 n n 
C5 C6 NAG sing 255 n n 
C5 O5 NAG sing 256 n n 
C5 H5 NAG sing 257 n n 
C6 O6 NAG sing 258 n n 
C6 H61 NAG sing 259 n n 
C6 H62 NAG sing 260 n n 
C7 C8 NAG sing 261 n n 
C7 N2 NAG sing 262 n n 
C7 O7 NAG doub 263 n n 
C8 H81 NAG sing 264 n n 
C8 H82 NAG sing 265 n n 
C8 H83 NAG sing 266 n n 
N2 HN2 NAG sing 267 n n 
O1 HO1 NAG sing 268 n n 
O3 HO3 NAG sing 269 n n 
O4 HO4 NAG sing 270 n n 
O6 HO6 NAG sing 271 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4WEB 
_atom_sites.fract_transf_matrix[1][1]    0.011633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00514 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG E 1 701 701 NAG NAG . 
E 4 NAG E 1 702 702 NAG NAG . 
F 5 ARF E 1 703 703 ARF ARF . 
G 5 ARF H 1 501 501 ARF ARF . 
H 5 ARF H 1 502 502 ARF ARF . 
I 5 ARF H 1 503 503 ARF ARF . 
J 5 ARF L 1 301 301 ARF ARF . 
K 5 ARF L 1 302 302 ARF ARF . 
L 6 HOH E 1 801 814 HOH HOH . 
L 6 HOH E 2 802 808 HOH HOH . 
L 6 HOH E 3 803 806 HOH HOH . 
L 6 HOH E 4 804 807 HOH HOH . 
L 6 HOH E 5 805 801 HOH HOH . 
L 6 HOH E 6 806 813 HOH HOH . 
L 6 HOH E 7 807 804 HOH HOH . 
L 6 HOH E 8 808 811 HOH HOH . 
L 6 HOH E 9 809 802 HOH HOH . 
L 6 HOH E 10 810 803 HOH HOH . 
L 6 HOH E 11 811 809 HOH HOH . 
L 6 HOH E 12 812 812 HOH HOH . 
M 6 HOH H 1 601 652 HOH HOH . 
M 6 HOH H 2 602 645 HOH HOH . 
M 6 HOH H 3 603 658 HOH HOH . 
M 6 HOH H 4 604 636 HOH HOH . 
M 6 HOH H 5 605 622 HOH HOH . 
M 6 HOH H 6 606 638 HOH HOH . 
M 6 HOH H 7 607 640 HOH HOH . 
M 6 HOH H 8 608 654 HOH HOH . 
M 6 HOH H 9 609 623 HOH HOH . 
M 6 HOH H 10 610 637 HOH HOH . 
M 6 HOH H 11 611 629 HOH HOH . 
M 6 HOH H 12 612 639 HOH HOH . 
M 6 HOH H 13 613 642 HOH HOH . 
M 6 HOH H 14 614 625 HOH HOH . 
M 6 HOH H 15 615 603 HOH HOH . 
M 6 HOH H 16 616 651 HOH HOH . 
M 6 HOH H 17 617 604 HOH HOH . 
M 6 HOH H 18 618 616 HOH HOH . 
M 6 HOH H 19 619 606 HOH HOH . 
M 6 HOH H 20 620 621 HOH HOH . 
M 6 HOH H 21 621 631 HOH HOH . 
M 6 HOH H 22 622 611 HOH HOH . 
M 6 HOH H 23 623 634 HOH HOH . 
M 6 HOH H 24 624 632 HOH HOH . 
M 6 HOH H 25 625 624 HOH HOH . 
M 6 HOH H 26 626 610 HOH HOH . 
M 6 HOH H 27 627 608 HOH HOH . 
M 6 HOH H 28 628 628 HOH HOH . 
M 6 HOH H 29 629 627 HOH HOH . 
M 6 HOH H 30 630 660 HOH HOH . 
M 6 HOH H 31 631 615 HOH HOH . 
M 6 HOH H 32 632 602 HOH HOH . 
M 6 HOH H 33 633 620 HOH HOH . 
M 6 HOH H 34 634 601 HOH HOH . 
M 6 HOH H 35 635 626 HOH HOH . 
M 6 HOH H 36 636 618 HOH HOH . 
M 6 HOH H 37 637 643 HOH HOH . 
M 6 HOH H 38 638 648 HOH HOH . 
M 6 HOH H 39 639 617 HOH HOH . 
M 6 HOH H 40 640 630 HOH HOH . 
M 6 HOH H 41 641 613 HOH HOH . 
M 6 HOH H 42 642 633 HOH HOH . 
M 6 HOH H 43 643 612 HOH HOH . 
M 6 HOH H 44 644 619 HOH HOH . 
M 6 HOH H 45 645 614 HOH HOH . 
M 6 HOH H 46 646 657 HOH HOH . 
M 6 HOH H 47 647 607 HOH HOH . 
M 6 HOH H 48 648 644 HOH HOH . 
M 6 HOH H 49 649 635 HOH HOH . 
M 6 HOH H 50 650 605 HOH HOH . 
M 6 HOH H 51 651 649 HOH HOH . 
M 6 HOH H 52 652 609 HOH HOH . 
M 6 HOH H 53 653 659 HOH HOH . 
M 6 HOH H 54 654 656 HOH HOH . 
M 6 HOH H 55 655 641 HOH HOH . 
M 6 HOH H 56 656 650 HOH HOH . 
M 6 HOH H 57 657 646 HOH HOH . 
M 6 HOH H 58 658 655 HOH HOH . 
M 6 HOH H 59 659 653 HOH HOH . 
M 6 HOH H 60 660 805 HOH HOH . 
M 6 HOH H 61 661 647 HOH HOH . 
N 6 HOH L 1 401 455 HOH HOH . 
N 6 HOH L 2 402 437 HOH HOH . 
N 6 HOH L 3 403 450 HOH HOH . 
N 6 HOH L 4 404 421 HOH HOH . 
N 6 HOH L 5 405 438 HOH HOH . 
N 6 HOH L 6 406 441 HOH HOH . 
N 6 HOH L 7 407 440 HOH HOH . 
N 6 HOH L 8 408 413 HOH HOH . 
N 6 HOH L 9 409 432 HOH HOH . 
N 6 HOH L 10 410 443 HOH HOH . 
N 6 HOH L 11 411 414 HOH HOH . 
N 6 HOH L 12 412 423 HOH HOH . 
N 6 HOH L 13 413 402 HOH HOH . 
N 6 HOH L 14 414 446 HOH HOH . 
N 6 HOH L 15 415 409 HOH HOH . 
N 6 HOH L 16 416 411 HOH HOH . 
N 6 HOH L 17 417 424 HOH HOH . 
N 6 HOH L 18 418 454 HOH HOH . 
N 6 HOH L 19 419 415 HOH HOH . 
N 6 HOH L 20 420 418 HOH HOH . 
N 6 HOH L 21 421 452 HOH HOH . 
N 6 HOH L 22 422 445 HOH HOH . 
N 6 HOH L 23 423 419 HOH HOH . 
N 6 HOH L 24 424 428 HOH HOH . 
N 6 HOH L 25 425 417 HOH HOH . 
N 6 HOH L 26 426 453 HOH HOH . 
N 6 HOH L 27 427 426 HOH HOH . 
N 6 HOH L 28 428 410 HOH HOH . 
N 6 HOH L 29 429 403 HOH HOH . 
N 6 HOH L 30 430 462 HOH HOH . 
N 6 HOH L 31 431 401 HOH HOH . 
N 6 HOH L 32 432 412 HOH HOH . 
N 6 HOH L 33 433 425 HOH HOH . 
N 6 HOH L 34 434 434 HOH HOH . 
N 6 HOH L 35 435 463 HOH HOH . 
N 6 HOH L 36 436 430 HOH HOH . 
N 6 HOH L 37 437 431 HOH HOH . 
N 6 HOH L 38 438 416 HOH HOH . 
N 6 HOH L 39 439 449 HOH HOH . 
N 6 HOH L 40 440 422 HOH HOH . 
N 6 HOH L 41 441 435 HOH HOH . 
N 6 HOH L 42 442 405 HOH HOH . 
N 6 HOH L 43 443 427 HOH HOH . 
N 6 HOH L 44 444 429 HOH HOH . 
N 6 HOH L 45 445 456 HOH HOH . 
N 6 HOH L 46 446 407 HOH HOH . 
N 6 HOH L 47 447 404 HOH HOH . 
N 6 HOH L 48 448 408 HOH HOH . 
N 6 HOH L 49 449 461 HOH HOH . 
N 6 HOH L 50 450 420 HOH HOH . 
N 6 HOH L 51 451 433 HOH HOH . 
N 6 HOH L 52 452 448 HOH HOH . 
N 6 HOH L 53 453 442 HOH HOH . 
N 6 HOH L 54 454 458 HOH HOH . 
N 6 HOH L 55 455 457 HOH HOH . 
N 6 HOH L 56 456 406 HOH HOH . 
N 6 HOH L 57 457 439 HOH HOH . 
N 6 HOH L 58 458 436 HOH HOH . 
N 6 HOH L 59 459 447 HOH HOH . 
N 6 HOH L 60 460 451 HOH HOH . 
N 6 HOH L 61 461 460 HOH HOH . 
N 6 HOH L 62 462 444 HOH HOH . 
N 6 HOH L 63 463 459 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 4 96.445 2.829 9.749 1 92.1 ? C1 NAG 702 E 1 
HETATM 2 C C2 NAG . . . E 4 96.974 1.593 10.492 1 93.04 ? C2 NAG 702 E 1 
HETATM 3 C C3 NAG . . . E 4 96.147 0.355 10.125 1 98.54 ? C3 NAG 702 E 1 
HETATM 4 C C4 NAG . . . E 4 95.882 0.299 8.624 1 99.82 ? C4 NAG 702 E 1 
HETATM 5 C C5 NAG . . . E 4 95.188 1.577 8.145 1 97.71 ? C5 NAG 702 E 1 
HETATM 6 C C6 NAG . . . E 4 93.759 1.364 7.69 1 88.72 ? C6 NAG 702 E 1 
HETATM 7 C C7 NAG . . . E 4 99.304 1.261 11.182 1 87.23 ? C7 NAG 702 E 1 
HETATM 8 C C8 NAG . . . E 4 100.708 1.01 10.725 1 85.03 ? C8 NAG 702 E 1 
HETATM 9 N N2 NAG . . . E 4 98.38 1.363 10.219 1 89.08 ? N2 NAG 702 E 1 
HETATM 10 O O3 NAG . . . E 4 94.925 0.347 10.854 1 103.4 ? O3 NAG 702 E 1 
HETATM 11 O O4 NAG . . . E 4 97.11 0.118 7.926 1 93.85 ? O4 NAG 702 E 1 
HETATM 12 O O5 NAG . . . E 4 95.154 2.551 9.201 1 95.77 ? O5 NAG 702 E 1 
HETATM 13 O O6 NAG . . . E 4 92.952 0.76 8.691 1 83.26 ? O6 NAG 702 E 1 
HETATM 14 O O7 NAG . . . E 4 99.017 1.374 12.37 1 86.45 ? O7 NAG 702 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#