data_4WED # _model_server_result.job_id DH2OQ6N5hSSZhieudcxZMA _model_server_result.datetime_utc '2025-02-05 18:58:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4WED # _exptl.entry_id 4WED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WED _cell.length_a 57.327 _cell.length_b 57.327 _cell.length_c 132.063 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WED _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 63 A LEU 63 1_555 A N MSE 64 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 64 A MSE 64 1_555 A N PHE 65 A PHE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C TRP 122 A TRP 122 1_555 A N MSE 123 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale4 A C MSE 123 A MSE 123 1_555 A N GLY 124 A GLY 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C TRP 130 A TRP 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 A C MSE 131 A MSE 131 1_555 A N ASN 132 A ASN 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 A C LEU 159 A LEU 159 1_555 A N MSE 160 A MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale8 A C MSE 160 A MSE 160 1_555 A N GLN 161 A GLN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 A C VAL 276 A VAL 276 1_555 A N MSE 277 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale10 A C MSE 277 A MSE 277 1_555 A N ALA 278 A ALA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C ASN 319 A ASN 319 1_555 A N MSE 320 A MSE 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 A C MSE 320 A MSE 320 1_555 A N PHE 321 A PHE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 A C GLU 388 A GLU 388 1_555 A N MSE 389 A MSE 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 389 A MSE 389 1_555 A N LYS 390 A LYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale15 A C ASP 515 A ASP 515 1_555 A N MSE 516 A MSE 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C MSE 516 A MSE 516 1_555 A N PRO 517 A PRO 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A OD1 ASP 62 A ASP 62 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc2 A OD2 ASP 62 A ASP 62 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD1 ASP 515 A ASP 515 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 B NA NA . A NA 601 1_555 E O HOH . A HOH 792 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 B NA NA . A NA 601 1_555 E O HOH . A HOH 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc6 B NA NA . A NA 601 1_555 E O HOH . A HOH 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 4WED _atom_sites.fract_transf_matrix[1][1] 0.017444 _atom_sites.fract_transf_matrix[1][2] 0.010071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 1 NA NA . C 3 FMT A 1 602 2 FMT FMT . D 4 GOL A 1 603 1 GOL GOL . E 5 HOH A 1 701 50 HOH HOH . E 5 HOH A 2 702 147 HOH HOH . E 5 HOH A 3 703 35 HOH HOH . E 5 HOH A 4 704 5 HOH HOH . E 5 HOH A 5 705 56 HOH HOH . E 5 HOH A 6 706 55 HOH HOH . E 5 HOH A 7 707 69 HOH HOH . E 5 HOH A 8 708 137 HOH HOH . E 5 HOH A 9 709 57 HOH HOH . E 5 HOH A 10 710 53 HOH HOH . E 5 HOH A 11 711 41 HOH HOH . E 5 HOH A 12 712 4 HOH HOH . E 5 HOH A 13 713 51 HOH HOH . E 5 HOH A 14 714 2 HOH HOH . E 5 HOH A 15 715 3 HOH HOH . E 5 HOH A 16 716 6 HOH HOH . E 5 HOH A 17 717 7 HOH HOH . E 5 HOH A 18 718 8 HOH HOH . E 5 HOH A 19 719 10 HOH HOH . E 5 HOH A 20 720 11 HOH HOH . E 5 HOH A 21 721 12 HOH HOH . E 5 HOH A 22 722 13 HOH HOH . E 5 HOH A 23 723 14 HOH HOH . E 5 HOH A 24 724 16 HOH HOH . E 5 HOH A 25 725 17 HOH HOH . E 5 HOH A 26 726 18 HOH HOH . E 5 HOH A 27 727 19 HOH HOH . E 5 HOH A 28 728 20 HOH HOH . E 5 HOH A 29 729 21 HOH HOH . E 5 HOH A 30 730 22 HOH HOH . E 5 HOH A 31 731 27 HOH HOH . E 5 HOH A 32 732 28 HOH HOH . E 5 HOH A 33 733 29 HOH HOH . E 5 HOH A 34 734 30 HOH HOH . E 5 HOH A 35 735 31 HOH HOH . E 5 HOH A 36 736 32 HOH HOH . E 5 HOH A 37 737 33 HOH HOH . E 5 HOH A 38 738 34 HOH HOH . E 5 HOH A 39 739 36 HOH HOH . E 5 HOH A 40 740 38 HOH HOH . E 5 HOH A 41 741 39 HOH HOH . E 5 HOH A 42 742 42 HOH HOH . E 5 HOH A 43 743 43 HOH HOH . E 5 HOH A 44 744 46 HOH HOH . E 5 HOH A 45 745 47 HOH HOH . E 5 HOH A 46 746 54 HOH HOH . E 5 HOH A 47 747 58 HOH HOH . E 5 HOH A 48 748 59 HOH HOH . E 5 HOH A 49 749 60 HOH HOH . E 5 HOH A 50 750 61 HOH HOH . E 5 HOH A 51 751 62 HOH HOH . E 5 HOH A 52 752 63 HOH HOH . E 5 HOH A 53 753 64 HOH HOH . E 5 HOH A 54 754 66 HOH HOH . E 5 HOH A 55 755 67 HOH HOH . E 5 HOH A 56 756 68 HOH HOH . E 5 HOH A 57 757 70 HOH HOH . E 5 HOH A 58 758 73 HOH HOH . E 5 HOH A 59 759 76 HOH HOH . E 5 HOH A 60 760 77 HOH HOH . E 5 HOH A 61 761 79 HOH HOH . E 5 HOH A 62 762 80 HOH HOH . E 5 HOH A 63 763 82 HOH HOH . E 5 HOH A 64 764 83 HOH HOH . E 5 HOH A 65 765 85 HOH HOH . E 5 HOH A 66 766 86 HOH HOH . E 5 HOH A 67 767 89 HOH HOH . E 5 HOH A 68 768 93 HOH HOH . E 5 HOH A 69 769 94 HOH HOH . E 5 HOH A 70 770 97 HOH HOH . E 5 HOH A 71 771 100 HOH HOH . E 5 HOH A 72 772 102 HOH HOH . E 5 HOH A 73 773 103 HOH HOH . E 5 HOH A 74 774 105 HOH HOH . E 5 HOH A 75 775 106 HOH HOH . E 5 HOH A 76 776 107 HOH HOH . E 5 HOH A 77 777 110 HOH HOH . E 5 HOH A 78 778 113 HOH HOH . E 5 HOH A 79 779 114 HOH HOH . E 5 HOH A 80 780 115 HOH HOH . E 5 HOH A 81 781 118 HOH HOH . E 5 HOH A 82 782 119 HOH HOH . E 5 HOH A 83 783 124 HOH HOH . E 5 HOH A 84 784 128 HOH HOH . E 5 HOH A 85 785 131 HOH HOH . E 5 HOH A 86 786 132 HOH HOH . E 5 HOH A 87 787 133 HOH HOH . E 5 HOH A 88 788 134 HOH HOH . E 5 HOH A 89 789 135 HOH HOH . E 5 HOH A 90 790 136 HOH HOH . E 5 HOH A 91 791 138 HOH HOH . E 5 HOH A 92 792 140 HOH HOH . E 5 HOH A 93 793 141 HOH HOH . E 5 HOH A 94 794 142 HOH HOH . E 5 HOH A 95 795 143 HOH HOH . E 5 HOH A 96 796 144 HOH HOH . E 5 HOH A 97 797 145 HOH HOH . E 5 HOH A 98 798 146 HOH HOH . E 5 HOH A 99 799 148 HOH HOH . E 5 HOH A 100 800 149 HOH HOH . E 5 HOH A 101 801 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . C 3 -2.795 8.567 -18.535 1 87.78 ? C FMT 602 A 1 HETATM 2 O O1 FMT . . . C 3 -2.749 9.276 -19.519 1 81.88 ? O1 FMT 602 A 1 HETATM 3 O O2 FMT . . . C 3 -3.575 8.897 -17.518 1 79.39 ? O2 FMT 602 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #