data_4WFR # _model_server_result.job_id W6bgd_nM7qpoMWFSMW4WZA _model_server_result.datetime_utc '2024-11-25 11:49:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4WFR # _exptl.entry_id 4WFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.36 _cell.angle_gamma 90 _cell.entry_id 4WFR _cell.length_a 41.77 _cell.length_b 47.094 _cell.length_c 53.951 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id 2AM _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2AM doub 1 n n P O2P 2AM sing 2 n n P O3P 2AM sing 3 n n P O2' 2AM sing 4 n n O2P HOP2 2AM sing 5 n n O3P HOP3 2AM sing 6 n n C5' O5' 2AM sing 7 n n C5' C4' 2AM sing 8 n n C5' "H5'1" 2AM sing 9 n n C5' "H5'2" 2AM sing 10 n n O5' HO5' 2AM sing 11 n n C4' O4' 2AM sing 12 n n C4' C3' 2AM sing 13 n n C4' H4' 2AM sing 14 n n O4' C1' 2AM sing 15 n n C3' O3' 2AM sing 16 n n C3' C2' 2AM sing 17 n n C3' H3' 2AM sing 18 n n O3' HO3' 2AM sing 19 n n C2' O2' 2AM sing 20 n n C2' C1' 2AM sing 21 n n C2' H2' 2AM sing 22 n n C1' N9 2AM sing 23 n n C1' H1' 2AM sing 24 n n N9 C8 2AM sing 25 n y N9 C4 2AM sing 26 n y C8 N7 2AM doub 27 n y C8 H8 2AM sing 28 n n N7 C5 2AM sing 29 n y C5 C6 2AM sing 30 n y C5 C4 2AM doub 31 n y C6 N6 2AM sing 32 n n C6 N1 2AM doub 33 n y N6 HN61 2AM sing 34 n n N6 HN62 2AM sing 35 n n N1 C2 2AM sing 36 n y C2 N3 2AM doub 37 n y C2 H2 2AM sing 38 n n N3 C4 2AM sing 39 n y # _atom_sites.entry_id 4WFR _atom_sites.fract_transf_matrix[1][1] 0.023941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AM A 1 401 1 2AM 2AM . C 3 HOH A 1 501 100 HOH HOH . C 3 HOH A 2 502 117 HOH HOH . C 3 HOH A 3 503 38 HOH HOH . C 3 HOH A 4 504 1 HOH HOH . C 3 HOH A 5 505 91 HOH HOH . C 3 HOH A 6 506 79 HOH HOH . C 3 HOH A 7 507 84 HOH HOH . C 3 HOH A 8 508 72 HOH HOH . C 3 HOH A 9 509 6 HOH HOH . C 3 HOH A 10 510 64 HOH HOH . C 3 HOH A 11 511 40 HOH HOH . C 3 HOH A 12 512 33 HOH HOH . C 3 HOH A 13 513 16 HOH HOH . C 3 HOH A 14 514 7 HOH HOH . C 3 HOH A 15 515 107 HOH HOH . C 3 HOH A 16 516 23 HOH HOH . C 3 HOH A 17 517 50 HOH HOH . C 3 HOH A 18 518 113 HOH HOH . C 3 HOH A 19 519 106 HOH HOH . C 3 HOH A 20 520 44 HOH HOH . C 3 HOH A 21 521 18 HOH HOH . C 3 HOH A 22 522 11 HOH HOH . C 3 HOH A 23 523 58 HOH HOH . C 3 HOH A 24 524 43 HOH HOH . C 3 HOH A 25 525 45 HOH HOH . C 3 HOH A 26 526 63 HOH HOH . C 3 HOH A 27 527 12 HOH HOH . C 3 HOH A 28 528 5 HOH HOH . C 3 HOH A 29 529 86 HOH HOH . C 3 HOH A 30 530 109 HOH HOH . C 3 HOH A 31 531 70 HOH HOH . C 3 HOH A 32 532 48 HOH HOH . C 3 HOH A 33 533 105 HOH HOH . C 3 HOH A 34 534 97 HOH HOH . C 3 HOH A 35 535 2 HOH HOH . C 3 HOH A 36 536 3 HOH HOH . C 3 HOH A 37 537 4 HOH HOH . C 3 HOH A 38 538 8 HOH HOH . C 3 HOH A 39 539 9 HOH HOH . C 3 HOH A 40 540 13 HOH HOH . C 3 HOH A 41 541 14 HOH HOH . C 3 HOH A 42 542 15 HOH HOH . C 3 HOH A 43 543 17 HOH HOH . C 3 HOH A 44 544 19 HOH HOH . C 3 HOH A 45 545 20 HOH HOH . C 3 HOH A 46 546 21 HOH HOH . C 3 HOH A 47 547 22 HOH HOH . C 3 HOH A 48 548 24 HOH HOH . C 3 HOH A 49 549 25 HOH HOH . C 3 HOH A 50 550 26 HOH HOH . C 3 HOH A 51 551 27 HOH HOH . C 3 HOH A 52 552 28 HOH HOH . C 3 HOH A 53 553 29 HOH HOH . C 3 HOH A 54 554 30 HOH HOH . C 3 HOH A 55 555 31 HOH HOH . C 3 HOH A 56 556 32 HOH HOH . C 3 HOH A 57 557 34 HOH HOH . C 3 HOH A 58 558 35 HOH HOH . C 3 HOH A 59 559 36 HOH HOH . C 3 HOH A 60 560 37 HOH HOH . C 3 HOH A 61 561 39 HOH HOH . C 3 HOH A 62 562 41 HOH HOH . C 3 HOH A 63 563 42 HOH HOH . C 3 HOH A 64 564 46 HOH HOH . C 3 HOH A 65 565 47 HOH HOH . C 3 HOH A 66 566 49 HOH HOH . C 3 HOH A 67 567 51 HOH HOH . C 3 HOH A 68 568 52 HOH HOH . C 3 HOH A 69 569 53 HOH HOH . C 3 HOH A 70 570 54 HOH HOH . C 3 HOH A 71 571 55 HOH HOH . C 3 HOH A 72 572 56 HOH HOH . C 3 HOH A 73 573 57 HOH HOH . C 3 HOH A 74 574 59 HOH HOH . C 3 HOH A 75 575 60 HOH HOH . C 3 HOH A 76 576 61 HOH HOH . C 3 HOH A 77 577 62 HOH HOH . C 3 HOH A 78 578 65 HOH HOH . C 3 HOH A 79 579 67 HOH HOH . C 3 HOH A 80 580 68 HOH HOH . C 3 HOH A 81 581 69 HOH HOH . C 3 HOH A 82 582 71 HOH HOH . C 3 HOH A 83 583 73 HOH HOH . C 3 HOH A 84 584 74 HOH HOH . C 3 HOH A 85 585 75 HOH HOH . C 3 HOH A 86 586 78 HOH HOH . C 3 HOH A 87 587 80 HOH HOH . C 3 HOH A 88 588 82 HOH HOH . C 3 HOH A 89 589 83 HOH HOH . C 3 HOH A 90 590 85 HOH HOH . C 3 HOH A 91 591 87 HOH HOH . C 3 HOH A 92 592 88 HOH HOH . C 3 HOH A 93 593 93 HOH HOH . C 3 HOH A 94 594 94 HOH HOH . C 3 HOH A 95 595 95 HOH HOH . C 3 HOH A 96 596 96 HOH HOH . C 3 HOH A 97 597 98 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 102 HOH HOH . C 3 HOH A 100 600 103 HOH HOH . C 3 HOH A 101 601 104 HOH HOH . C 3 HOH A 102 602 108 HOH HOH . C 3 HOH A 103 603 110 HOH HOH . C 3 HOH A 104 604 111 HOH HOH . C 3 HOH A 105 605 112 HOH HOH . C 3 HOH A 106 606 114 HOH HOH . C 3 HOH A 107 607 115 HOH HOH . C 3 HOH A 108 608 116 HOH HOH . C 3 HOH A 109 609 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2AM . . . B 2 45.135 6.355 21.882 1 32.51 ? P 2AM 401 A 1 HETATM 2 O O1P 2AM . . . B 2 46.073 5.439 21.133 1 28.19 ? O1P 2AM 401 A 1 HETATM 3 O O2P 2AM . . . B 2 45.071 7.696 21.197 1 51.01 ? O2P 2AM 401 A 1 HETATM 4 O O3P 2AM . . . B 2 43.743 5.773 21.915 1 28.76 ? O3P 2AM 401 A 1 HETATM 5 C C5' 2AM . . . B 2 46.266 5.296 27.783 1 36.94 ? C5' 2AM 401 A 1 HETATM 6 O O5' 2AM . . . B 2 45.087 5.431 28.542 1 62.22 ? O5' 2AM 401 A 1 HETATM 7 C C4' 2AM . . . B 2 46.141 6.083 26.481 1 34.46 ? C4' 2AM 401 A 1 HETATM 8 O O4' 2AM . . . B 2 47.428 6.395 25.978 1 39.6 ? O4' 2AM 401 A 1 HETATM 9 C C3' 2AM . . . B 2 45.401 5.313 25.398 1 41.93 ? C3' 2AM 401 A 1 HETATM 10 O O3' 2AM . . . B 2 44.098 5.823 25.232 1 48.78 ? O3' 2AM 401 A 1 HETATM 11 C C2' 2AM . . . B 2 46.228 5.521 24.15 1 42.07 ? C2' 2AM 401 A 1 HETATM 12 O O2' 2AM . . . B 2 45.639 6.557 23.397 1 33.98 ? O2' 2AM 401 A 1 HETATM 13 C C1' 2AM . . . B 2 47.6 5.932 24.651 1 39.42 ? C1' 2AM 401 A 1 HETATM 14 N N9 2AM . . . B 2 48.531 4.785 24.725 1 57.07 ? N9 2AM 401 A 1 HETATM 15 C C8 2AM . . . B 2 48.385 3.697 25.55 1 39.27 ? C8 2AM 401 A 1 HETATM 16 N N7 2AM . . . B 2 49.431 2.866 25.36 1 39.03 ? N7 2AM 401 A 1 HETATM 17 C C5 2AM . . . B 2 50.247 3.403 24.43 1 41.74 ? C5 2AM 401 A 1 HETATM 18 C C6 2AM . . . B 2 51.44 2.961 23.876 1 54.66 ? C6 2AM 401 A 1 HETATM 19 N N6 2AM . . . B 2 51.966 1.802 24.266 1 48.38 ? N6 2AM 401 A 1 HETATM 20 N N1 2AM . . . B 2 52.076 3.73 22.922 1 60.88 ? N1 2AM 401 A 1 HETATM 21 C C2 2AM . . . B 2 51.522 4.93 22.527 1 48.4 ? C2 2AM 401 A 1 HETATM 22 N N3 2AM . . . B 2 50.333 5.358 23.085 1 50.73 ? N3 2AM 401 A 1 HETATM 23 C C4 2AM . . . B 2 49.702 4.612 24.024 1 42.63 ? C4 2AM 401 A 1 HETATM 24 H "H5'1" 2AM . . . B 2 46.44 4.243 27.56 1 44.33 ? "H5'1" 2AM 401 A 1 HETATM 25 H "H5'2" 2AM . . . B 2 47.117 5.666 28.356 1 44.33 ? "H5'2" 2AM 401 A 1 HETATM 26 H HO5' 2AM . . . B 2 44.453 6.002 28.061 1 74.67 ? HO5' 2AM 401 A 1 HETATM 27 H H4' 2AM . . . B 2 45.595 7.004 26.685 1 41.35 ? H4' 2AM 401 A 1 HETATM 28 H H3' 2AM . . . B 2 45.376 4.253 25.651 1 50.31 ? H3' 2AM 401 A 1 HETATM 29 H HO3' 2AM . . . B 2 44.009 6.206 24.334 1 58.54 ? HO3' 2AM 401 A 1 HETATM 30 H H2' 2AM . . . B 2 46.292 4.595 23.578 1 50.49 ? H2' 2AM 401 A 1 HETATM 31 H H1' 2AM . . . B 2 48.004 6.72 24.015 1 47.3 ? H1' 2AM 401 A 1 HETATM 32 H H8 2AM . . . B 2 47.56 3.532 26.244 1 47.12 ? H8 2AM 401 A 1 HETATM 33 H HN61 2AM . . . B 2 51.494 1.242 24.969 1 58.06 ? HN61 2AM 401 A 1 HETATM 34 H HN62 2AM . . . B 2 52.841 1.48 23.864 1 58.06 ? HN62 2AM 401 A 1 HETATM 35 H H2 2AM . . . B 2 52.043 5.559 21.805 1 58.08 ? H2 2AM 401 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #