data_4WG2
#
_model_server_result.job_id            O-GlAzJ5XaxtW7Xeu537Lw 
_model_server_result.datetime_utc      '2024-11-22 05:12:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wg2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":603}' 
#
_entry.id    4WG2 
#
_exptl.entry_id    4WG2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WG2 
_cell.length_a            206.897 
_cell.length_b            206.897 
_cell.length_c            119.385 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WG2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 400 A SER 400 1_555 F FE HEM . A HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc2 B OG SER 400 B SER 400 1_555 G FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc3 C OG SER 400 C SER 400 1_555 I FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     4WG2 
_atom_sites.fract_transf_matrix[1][1]    0.004833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004833 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 601 1 SO4 SO4 . 
E 2 SO4 A 1 602 3 SO4 SO4 . 
F 3 HEM A 1 603 500 HEM HEM . 
G 3 HEM B 1 500 500 HEM HEM . 
H 2 SO4 C 1 601 2 SO4 SO4 . 
I 3 HEM C 1 602 500 HEM HEM . 
J 4 HOH A 1 701 73 HOH HOH . 
J 4 HOH A 2 702 30 HOH HOH . 
J 4 HOH A 3 703 8 HOH HOH . 
J 4 HOH A 4 704 106 HOH HOH . 
J 4 HOH A 5 705 9 HOH HOH . 
J 4 HOH A 6 706 17 HOH HOH . 
J 4 HOH A 7 707 19 HOH HOH . 
J 4 HOH A 8 708 27 HOH HOH . 
J 4 HOH A 9 709 28 HOH HOH . 
J 4 HOH A 10 710 33 HOH HOH . 
J 4 HOH A 11 711 42 HOH HOH . 
J 4 HOH A 12 712 43 HOH HOH . 
J 4 HOH A 13 713 62 HOH HOH . 
J 4 HOH A 14 714 63 HOH HOH . 
J 4 HOH A 15 715 84 HOH HOH . 
J 4 HOH A 16 716 88 HOH HOH . 
J 4 HOH A 17 717 92 HOH HOH . 
J 4 HOH A 18 718 98 HOH HOH . 
J 4 HOH A 19 719 105 HOH HOH . 
J 4 HOH A 20 720 109 HOH HOH . 
J 4 HOH A 21 721 113 HOH HOH . 
J 4 HOH A 22 722 125 HOH HOH . 
J 4 HOH A 23 723 139 HOH HOH . 
J 4 HOH A 24 724 152 HOH HOH . 
K 4 HOH B 1 601 81 HOH HOH . 
K 4 HOH B 2 602 54 HOH HOH . 
K 4 HOH B 3 603 71 HOH HOH . 
K 4 HOH B 4 604 18 HOH HOH . 
K 4 HOH B 5 605 155 HOH HOH . 
K 4 HOH B 6 606 61 HOH HOH . 
K 4 HOH B 7 607 72 HOH HOH . 
K 4 HOH B 8 608 14 HOH HOH . 
K 4 HOH B 9 609 21 HOH HOH . 
K 4 HOH B 10 610 24 HOH HOH . 
K 4 HOH B 11 611 25 HOH HOH . 
K 4 HOH B 12 612 31 HOH HOH . 
K 4 HOH B 13 613 34 HOH HOH . 
K 4 HOH B 14 614 35 HOH HOH . 
K 4 HOH B 15 615 41 HOH HOH . 
K 4 HOH B 16 616 64 HOH HOH . 
K 4 HOH B 17 617 67 HOH HOH . 
K 4 HOH B 18 618 68 HOH HOH . 
K 4 HOH B 19 619 85 HOH HOH . 
K 4 HOH B 20 620 103 HOH HOH . 
K 4 HOH B 21 621 141 HOH HOH . 
K 4 HOH B 22 622 156 HOH HOH . 
L 4 HOH C 1 701 65 HOH HOH . 
L 4 HOH C 2 702 80 HOH HOH . 
L 4 HOH C 3 703 11 HOH HOH . 
L 4 HOH C 4 704 23 HOH HOH . 
L 4 HOH C 5 705 29 HOH HOH . 
L 4 HOH C 6 706 36 HOH HOH . 
L 4 HOH C 7 707 38 HOH HOH . 
L 4 HOH C 8 708 50 HOH HOH . 
L 4 HOH C 9 709 59 HOH HOH . 
L 4 HOH C 10 710 66 HOH HOH . 
L 4 HOH C 11 711 74 HOH HOH . 
L 4 HOH C 12 712 78 HOH HOH . 
L 4 HOH C 13 713 89 HOH HOH . 
L 4 HOH C 14 714 94 HOH HOH . 
L 4 HOH C 15 715 104 HOH HOH . 
L 4 HOH C 16 716 114 HOH HOH . 
L 4 HOH C 17 717 116 HOH HOH . 
L 4 HOH C 18 718 140 HOH HOH . 
L 4 HOH C 19 719 146 HOH HOH . 
L 4 HOH C 20 720 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 3 -0.136 -28.527 -22.774 1 31.89 ? CHA HEM 603 A 1 
HETATM 2 C CHB HEM . . . F 3 1.472 -32.931 -21.616 1 32.48 ? CHB HEM 603 A 1 
HETATM 3 C CHC HEM . . . F 3 3.091 -31.174 -17.372 1 33.21 ? CHC HEM 603 A 1 
HETATM 4 C CHD HEM . . . F 3 0.888 -27.052 -18.306 1 34.46 ? CHD HEM 603 A 1 
HETATM 5 C C1A HEM . . . F 3 0.189 -29.845 -22.824 1 33.06 ? C1A HEM 603 A 1 
HETATM 6 C C2A HEM . . . F 3 -0.108 -30.706 -23.906 1 34.06 ? C2A HEM 603 A 1 
HETATM 7 C C3A HEM . . . F 3 0.334 -31.941 -23.571 1 35.01 ? C3A HEM 603 A 1 
HETATM 8 C C4A HEM . . . F 3 0.924 -31.87 -22.285 1 33.29 ? C4A HEM 603 A 1 
HETATM 9 C CMA HEM . . . F 3 0.219 -33.156 -24.448 1 34.05 ? CMA HEM 603 A 1 
HETATM 10 C CAA HEM . . . F 3 -0.777 -30.381 -25.197 1 33.9 ? CAA HEM 603 A 1 
HETATM 11 C CBA HEM . . . F 3 -2.291 -30.547 -25.051 1 35.26 ? CBA HEM 603 A 1 
HETATM 12 C CGA HEM . . . F 3 -2.99 -30.232 -26.371 1 37.44 ? CGA HEM 603 A 1 
HETATM 13 O O1A HEM . . . F 3 -2.311 -30.072 -27.426 1 39.58 ? O1A HEM 603 A 1 
HETATM 14 O O2A HEM . . . F 3 -4.247 -30.112 -26.414 1 36.47 ? O2A HEM 603 A 1 
HETATM 15 C C1B HEM . . . F 3 2.046 -32.812 -20.348 1 34.11 ? C1B HEM 603 A 1 
HETATM 16 C C2B HEM . . . F 3 2.69 -33.906 -19.707 1 34.44 ? C2B HEM 603 A 1 
HETATM 17 C C3B HEM . . . F 3 3.141 -33.445 -18.482 1 34.54 ? C3B HEM 603 A 1 
HETATM 18 C C4B HEM . . . F 3 2.79 -32.004 -18.443 1 33.98 ? C4B HEM 603 A 1 
HETATM 19 C CMB HEM . . . F 3 2.79 -35.297 -20.267 1 33.87 ? CMB HEM 603 A 1 
HETATM 20 C CAB HEM . . . F 3 3.926 -34.119 -17.422 1 34.73 ? CAB HEM 603 A 1 
HETATM 21 C CBB HEM . . . F 3 4.553 -35.281 -17.605 1 35.12 ? CBB HEM 603 A 1 
HETATM 22 C C1C HEM . . . F 3 2.645 -29.884 -17.24 1 33.11 ? C1C HEM 603 A 1 
HETATM 23 C C2C HEM . . . F 3 2.807 -29.088 -16.108 1 35.29 ? C2C HEM 603 A 1 
HETATM 24 C C3C HEM . . . F 3 2.17 -27.897 -16.377 1 33.95 ? C3C HEM 603 A 1 
HETATM 25 C C4C HEM . . . F 3 1.604 -28.026 -17.664 1 34.31 ? C4C HEM 603 A 1 
HETATM 26 C CMC HEM . . . F 3 3.587 -29.494 -14.851 1 36.37 ? CMC HEM 603 A 1 
HETATM 27 C CAC HEM . . . F 3 2.065 -26.69 -15.554 1 35.74 ? CAC HEM 603 A 1 
HETATM 28 C CBC HEM . . . F 3 2.685 -26.547 -14.39 1 38.79 ? CBC HEM 603 A 1 
HETATM 29 C C1D HEM . . . F 3 0.454 -27.16 -19.609 1 32.91 ? C1D HEM 603 A 1 
HETATM 30 C C2D HEM . . . F 3 -0.21 -26.032 -20.294 1 31.84 ? C2D HEM 603 A 1 
HETATM 31 C C3D HEM . . . F 3 -0.521 -26.463 -21.507 1 31.85 ? C3D HEM 603 A 1 
HETATM 32 C C4D HEM . . . F 3 0.009 -27.824 -21.598 1 32.03 ? C4D HEM 603 A 1 
HETATM 33 C CMD HEM . . . F 3 -0.563 -24.676 -19.763 1 30.78 ? CMD HEM 603 A 1 
HETATM 34 C CAD HEM . . . F 3 -1.152 -25.634 -22.576 1 33.63 ? CAD HEM 603 A 1 
HETATM 35 C CBD HEM . . . F 3 -0.027 -24.795 -23.252 1 34.77 ? CBD HEM 603 A 1 
HETATM 36 C CGD HEM . . . F 3 -0.471 -23.979 -24.475 1 36.71 ? CGD HEM 603 A 1 
HETATM 37 O O1D HEM . . . F 3 -0.122 -22.789 -24.599 1 37.91 ? O1D HEM 603 A 1 
HETATM 38 O O2D HEM . . . F 3 -1.156 -24.489 -25.407 1 40.44 ? O2D HEM 603 A 1 
HETATM 39 N NA HEM . . . F 3 0.836 -30.575 -21.833 1 33.96 ? NA HEM 603 A 1 
HETATM 40 N NB HEM . . . F 3 2.216 -31.7 -19.598 1 33.55 ? NB HEM 603 A 1 
HETATM 41 N NC HEM . . . F 3 1.957 -29.219 -18.154 1 32.93 ? NC HEM 603 A 1 
HETATM 42 N ND HEM . . . F 3 0.644 -28.168 -20.45 1 32.29 ? ND HEM 603 A 1 
HETATM 43 FE FE HEM . . . F 3 1.379 -29.842 -20.035 1 34.3 ? FE HEM 603 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#