data_4WGJ # _model_server_result.job_id bfp_Uvofs3Ct8xwU22x7Xg _model_server_result.datetime_utc '2025-03-13 19:12:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4WGJ # _exptl.entry_id 4WGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WGJ _cell.length_a 59.33 _cell.length_b 92.02 _cell.length_c 45.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4WGJ _atom_sites.fract_transf_matrix[1][1] 0.016855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 301 1 ANP ANP . C 3 EDO A 1 302 1 EDO EDO . D 4 GLY A 1 303 1 GLY GLY . E 4 GLY A 1 304 2 GLY GLY . F 5 HOH A 1 401 31 HOH HOH . F 5 HOH A 2 402 100 HOH HOH . F 5 HOH A 3 403 40 HOH HOH . F 5 HOH A 4 404 176 HOH HOH . F 5 HOH A 5 405 209 HOH HOH . F 5 HOH A 6 406 137 HOH HOH . F 5 HOH A 7 407 98 HOH HOH . F 5 HOH A 8 408 68 HOH HOH . F 5 HOH A 9 409 59 HOH HOH . F 5 HOH A 10 410 43 HOH HOH . F 5 HOH A 11 411 219 HOH HOH . F 5 HOH A 12 412 77 HOH HOH . F 5 HOH A 13 413 27 HOH HOH . F 5 HOH A 14 414 135 HOH HOH . F 5 HOH A 15 415 51 HOH HOH . F 5 HOH A 16 416 21 HOH HOH . F 5 HOH A 17 417 232 HOH HOH . F 5 HOH A 18 418 75 HOH HOH . F 5 HOH A 19 419 16 HOH HOH . F 5 HOH A 20 420 3 HOH HOH . F 5 HOH A 21 421 146 HOH HOH . F 5 HOH A 22 422 231 HOH HOH . F 5 HOH A 23 423 69 HOH HOH . F 5 HOH A 24 424 108 HOH HOH . F 5 HOH A 25 425 48 HOH HOH . F 5 HOH A 26 426 220 HOH HOH . F 5 HOH A 27 427 91 HOH HOH . F 5 HOH A 28 428 222 HOH HOH . F 5 HOH A 29 429 180 HOH HOH . F 5 HOH A 30 430 13 HOH HOH . F 5 HOH A 31 431 85 HOH HOH . F 5 HOH A 32 432 103 HOH HOH . F 5 HOH A 33 433 223 HOH HOH . F 5 HOH A 34 434 167 HOH HOH . F 5 HOH A 35 435 202 HOH HOH . F 5 HOH A 36 436 118 HOH HOH . F 5 HOH A 37 437 162 HOH HOH . F 5 HOH A 38 438 159 HOH HOH . F 5 HOH A 39 439 195 HOH HOH . F 5 HOH A 40 440 189 HOH HOH . F 5 HOH A 41 441 145 HOH HOH . F 5 HOH A 42 442 208 HOH HOH . F 5 HOH A 43 443 66 HOH HOH . F 5 HOH A 44 444 110 HOH HOH . F 5 HOH A 45 445 67 HOH HOH . F 5 HOH A 46 446 60 HOH HOH . F 5 HOH A 47 447 25 HOH HOH . F 5 HOH A 48 448 178 HOH HOH . F 5 HOH A 49 449 199 HOH HOH . F 5 HOH A 50 450 125 HOH HOH . F 5 HOH A 51 451 95 HOH HOH . F 5 HOH A 52 452 112 HOH HOH . F 5 HOH A 53 453 57 HOH HOH . F 5 HOH A 54 454 42 HOH HOH . F 5 HOH A 55 455 139 HOH HOH . F 5 HOH A 56 456 86 HOH HOH . F 5 HOH A 57 457 93 HOH HOH . F 5 HOH A 58 458 140 HOH HOH . F 5 HOH A 59 459 210 HOH HOH . F 5 HOH A 60 460 54 HOH HOH . F 5 HOH A 61 461 94 HOH HOH . F 5 HOH A 62 462 101 HOH HOH . F 5 HOH A 63 463 204 HOH HOH . F 5 HOH A 64 464 44 HOH HOH . F 5 HOH A 65 465 168 HOH HOH . F 5 HOH A 66 466 226 HOH HOH . F 5 HOH A 67 467 104 HOH HOH . F 5 HOH A 68 468 72 HOH HOH . F 5 HOH A 69 469 131 HOH HOH . F 5 HOH A 70 470 171 HOH HOH . F 5 HOH A 71 471 157 HOH HOH . F 5 HOH A 72 472 187 HOH HOH . F 5 HOH A 73 473 215 HOH HOH . F 5 HOH A 74 474 88 HOH HOH . F 5 HOH A 75 475 151 HOH HOH . F 5 HOH A 76 476 214 HOH HOH . F 5 HOH A 77 477 216 HOH HOH . F 5 HOH A 78 478 217 HOH HOH . F 5 HOH A 79 479 156 HOH HOH . F 5 HOH A 80 480 82 HOH HOH . F 5 HOH A 81 481 87 HOH HOH . F 5 HOH A 82 482 233 HOH HOH . F 5 HOH A 83 483 229 HOH HOH . F 5 HOH A 84 484 182 HOH HOH . F 5 HOH A 85 485 191 HOH HOH . F 5 HOH A 86 486 1 HOH HOH . F 5 HOH A 87 487 2 HOH HOH . F 5 HOH A 88 488 4 HOH HOH . F 5 HOH A 89 489 5 HOH HOH . F 5 HOH A 90 490 6 HOH HOH . F 5 HOH A 91 491 7 HOH HOH . F 5 HOH A 92 492 8 HOH HOH . F 5 HOH A 93 493 9 HOH HOH . F 5 HOH A 94 494 10 HOH HOH . F 5 HOH A 95 495 11 HOH HOH . F 5 HOH A 96 496 12 HOH HOH . F 5 HOH A 97 497 14 HOH HOH . F 5 HOH A 98 498 15 HOH HOH . F 5 HOH A 99 499 17 HOH HOH . F 5 HOH A 100 500 18 HOH HOH . F 5 HOH A 101 501 19 HOH HOH . F 5 HOH A 102 502 20 HOH HOH . F 5 HOH A 103 503 22 HOH HOH . F 5 HOH A 104 504 23 HOH HOH . F 5 HOH A 105 505 24 HOH HOH . F 5 HOH A 106 506 26 HOH HOH . F 5 HOH A 107 507 28 HOH HOH . F 5 HOH A 108 508 29 HOH HOH . F 5 HOH A 109 509 30 HOH HOH . F 5 HOH A 110 510 32 HOH HOH . F 5 HOH A 111 511 33 HOH HOH . F 5 HOH A 112 512 34 HOH HOH . F 5 HOH A 113 513 35 HOH HOH . F 5 HOH A 114 514 36 HOH HOH . F 5 HOH A 115 515 37 HOH HOH . F 5 HOH A 116 516 38 HOH HOH . F 5 HOH A 117 517 41 HOH HOH . F 5 HOH A 118 518 45 HOH HOH . F 5 HOH A 119 519 46 HOH HOH . F 5 HOH A 120 520 47 HOH HOH . F 5 HOH A 121 521 49 HOH HOH . F 5 HOH A 122 522 50 HOH HOH . F 5 HOH A 123 523 52 HOH HOH . F 5 HOH A 124 524 53 HOH HOH . F 5 HOH A 125 525 55 HOH HOH . F 5 HOH A 126 526 56 HOH HOH . F 5 HOH A 127 527 58 HOH HOH . F 5 HOH A 128 528 61 HOH HOH . F 5 HOH A 129 529 62 HOH HOH . F 5 HOH A 130 530 63 HOH HOH . F 5 HOH A 131 531 64 HOH HOH . F 5 HOH A 132 532 65 HOH HOH . F 5 HOH A 133 533 70 HOH HOH . F 5 HOH A 134 534 71 HOH HOH . F 5 HOH A 135 535 73 HOH HOH . F 5 HOH A 136 536 74 HOH HOH . F 5 HOH A 137 537 76 HOH HOH . F 5 HOH A 138 538 78 HOH HOH . F 5 HOH A 139 539 79 HOH HOH . F 5 HOH A 140 540 80 HOH HOH . F 5 HOH A 141 541 81 HOH HOH . F 5 HOH A 142 542 83 HOH HOH . F 5 HOH A 143 543 84 HOH HOH . F 5 HOH A 144 544 89 HOH HOH . F 5 HOH A 145 545 90 HOH HOH . F 5 HOH A 146 546 92 HOH HOH . F 5 HOH A 147 547 96 HOH HOH . F 5 HOH A 148 548 97 HOH HOH . F 5 HOH A 149 549 99 HOH HOH . F 5 HOH A 150 550 102 HOH HOH . F 5 HOH A 151 551 105 HOH HOH . F 5 HOH A 152 552 106 HOH HOH . F 5 HOH A 153 553 107 HOH HOH . F 5 HOH A 154 554 109 HOH HOH . F 5 HOH A 155 555 111 HOH HOH . F 5 HOH A 156 556 113 HOH HOH . F 5 HOH A 157 557 114 HOH HOH . F 5 HOH A 158 558 115 HOH HOH . F 5 HOH A 159 559 116 HOH HOH . F 5 HOH A 160 560 117 HOH HOH . F 5 HOH A 161 561 119 HOH HOH . F 5 HOH A 162 562 120 HOH HOH . F 5 HOH A 163 563 121 HOH HOH . F 5 HOH A 164 564 122 HOH HOH . F 5 HOH A 165 565 123 HOH HOH . F 5 HOH A 166 566 124 HOH HOH . F 5 HOH A 167 567 126 HOH HOH . F 5 HOH A 168 568 127 HOH HOH . F 5 HOH A 169 569 128 HOH HOH . F 5 HOH A 170 570 129 HOH HOH . F 5 HOH A 171 571 130 HOH HOH . F 5 HOH A 172 572 132 HOH HOH . F 5 HOH A 173 573 133 HOH HOH . F 5 HOH A 174 574 134 HOH HOH . F 5 HOH A 175 575 136 HOH HOH . F 5 HOH A 176 576 138 HOH HOH . F 5 HOH A 177 577 141 HOH HOH . F 5 HOH A 178 578 142 HOH HOH . F 5 HOH A 179 579 143 HOH HOH . F 5 HOH A 180 580 144 HOH HOH . F 5 HOH A 181 581 147 HOH HOH . F 5 HOH A 182 582 148 HOH HOH . F 5 HOH A 183 583 149 HOH HOH . F 5 HOH A 184 584 150 HOH HOH . F 5 HOH A 185 585 152 HOH HOH . F 5 HOH A 186 586 153 HOH HOH . F 5 HOH A 187 587 154 HOH HOH . F 5 HOH A 188 588 155 HOH HOH . F 5 HOH A 189 589 158 HOH HOH . F 5 HOH A 190 590 160 HOH HOH . F 5 HOH A 191 591 161 HOH HOH . F 5 HOH A 192 592 163 HOH HOH . F 5 HOH A 193 593 164 HOH HOH . F 5 HOH A 194 594 165 HOH HOH . F 5 HOH A 195 595 166 HOH HOH . F 5 HOH A 196 596 169 HOH HOH . F 5 HOH A 197 597 170 HOH HOH . F 5 HOH A 198 598 172 HOH HOH . F 5 HOH A 199 599 173 HOH HOH . F 5 HOH A 200 600 174 HOH HOH . F 5 HOH A 201 601 175 HOH HOH . F 5 HOH A 202 602 177 HOH HOH . F 5 HOH A 203 603 179 HOH HOH . F 5 HOH A 204 604 181 HOH HOH . F 5 HOH A 205 605 183 HOH HOH . F 5 HOH A 206 606 184 HOH HOH . F 5 HOH A 207 607 185 HOH HOH . F 5 HOH A 208 608 186 HOH HOH . F 5 HOH A 209 609 188 HOH HOH . F 5 HOH A 210 610 190 HOH HOH . F 5 HOH A 211 611 192 HOH HOH . F 5 HOH A 212 612 193 HOH HOH . F 5 HOH A 213 613 194 HOH HOH . F 5 HOH A 214 614 196 HOH HOH . F 5 HOH A 215 615 198 HOH HOH . F 5 HOH A 216 616 200 HOH HOH . F 5 HOH A 217 617 201 HOH HOH . F 5 HOH A 218 618 203 HOH HOH . F 5 HOH A 219 619 205 HOH HOH . F 5 HOH A 220 620 206 HOH HOH . F 5 HOH A 221 621 207 HOH HOH . F 5 HOH A 222 622 211 HOH HOH . F 5 HOH A 223 623 212 HOH HOH . F 5 HOH A 224 624 213 HOH HOH . F 5 HOH A 225 625 221 HOH HOH . F 5 HOH A 226 626 224 HOH HOH . F 5 HOH A 227 627 225 HOH HOH . F 5 HOH A 228 628 227 HOH HOH . F 5 HOH A 229 629 228 HOH HOH . F 5 HOH A 230 630 230 HOH HOH . F 5 HOH A 231 631 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 49.351 18.525 -15.028 1 28.78 ? PG ANP 301 A 1 HETATM 2 O O1G ANP . . . B 2 49.195 18.378 -16.589 1 26.38 ? O1G ANP 301 A 1 HETATM 3 O O2G ANP . . . B 2 50.707 17.99 -14.658 1 27.88 ? O2G ANP 301 A 1 HETATM 4 O O3G ANP . . . B 2 49.251 20.049 -14.659 1 24.13 ? O3G ANP 301 A 1 HETATM 5 P PB ANP . . . B 2 46.609 17.917 -14.022 1 19.43 ? PB ANP 301 A 1 HETATM 6 O O1B ANP . . . B 2 46.165 18.636 -15.254 1 15.64 ? O1B ANP 301 A 1 HETATM 7 O O2B ANP . . . B 2 45.825 16.592 -13.792 1 22.33 ? O2B ANP 301 A 1 HETATM 8 N N3B ANP . . . B 2 48.25 17.548 -14.145 1 18.77 ? N3B ANP 301 A 1 HETATM 9 P PA ANP . . . B 2 46.331 18.35 -11.259 1 17.96 ? PA ANP 301 A 1 HETATM 10 O O1A ANP . . . B 2 47.23 17.188 -11.022 1 20.06 ? O1A ANP 301 A 1 HETATM 11 O O2A ANP . . . B 2 44.92 18.233 -10.697 1 12.82 ? O2A ANP 301 A 1 HETATM 12 O O3A ANP . . . B 2 46.294 18.825 -12.778 1 18.35 ? O3A ANP 301 A 1 HETATM 13 O O5' ANP . . . B 2 47.033 19.635 -10.644 1 19.3 ? O5' ANP 301 A 1 HETATM 14 C C5' ANP . . . B 2 48.4 19.925 -11.024 1 23.95 ? C5' ANP 301 A 1 HETATM 15 C C4' ANP . . . B 2 48.758 21.353 -10.696 1 26.81 ? C4' ANP 301 A 1 HETATM 16 O O4' ANP . . . B 2 49.143 21.451 -9.299 1 27.73 ? O4' ANP 301 A 1 HETATM 17 C C3' ANP . . . B 2 49.939 21.894 -11.51 1 28.2 ? C3' ANP 301 A 1 HETATM 18 O O3' ANP . . . B 2 49.723 23.228 -11.962 1 27.18 ? O3' ANP 301 A 1 HETATM 19 C C2' ANP . . . B 2 51.102 21.806 -10.518 1 27.43 ? C2' ANP 301 A 1 HETATM 20 O O2' ANP . . . B 2 52.146 22.731 -10.799 1 28.82 ? O2' ANP 301 A 1 HETATM 21 C C1' ANP . . . B 2 50.381 22.131 -9.214 1 26.95 ? C1' ANP 301 A 1 HETATM 22 N N9 ANP . . . B 2 51.108 21.691 -8.025 1 25.77 ? N9 ANP 301 A 1 HETATM 23 C C8 ANP . . . B 2 51.835 20.537 -7.88 1 30.62 ? C8 ANP 301 A 1 HETATM 24 N N7 ANP . . . B 2 52.408 20.41 -6.707 1 31.53 ? N7 ANP 301 A 1 HETATM 25 C C5 ANP . . . B 2 52.035 21.562 -6.031 1 23.41 ? C5 ANP 301 A 1 HETATM 26 C C6 ANP . . . B 2 52.319 22.041 -4.736 1 23.86 ? C6 ANP 301 A 1 HETATM 27 N N6 ANP . . . B 2 53.071 21.381 -3.852 1 22.7 ? N6 ANP 301 A 1 HETATM 28 N N1 ANP . . . B 2 51.793 23.233 -4.376 1 23.07 ? N1 ANP 301 A 1 HETATM 29 C C2 ANP . . . B 2 51.044 23.898 -5.259 1 27.21 ? C2 ANP 301 A 1 HETATM 30 N N3 ANP . . . B 2 50.71 23.549 -6.504 1 20.63 ? N3 ANP 301 A 1 HETATM 31 C C4 ANP . . . B 2 51.238 22.365 -6.831 1 19.46 ? C4 ANP 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #