data_4WHF # _model_server_result.job_id xdFt7lx1KD9D1rzpAL_DQw _model_server_result.datetime_utc '2024-11-01 10:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4whf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4WHF # _exptl.entry_id 4WHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.359 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3,4,5-trihydroxyphenyl)decan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WHF _cell.length_a 74.378 _cell.length_b 76.44 _cell.length_c 128.664 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,I 1 1 B,D,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H24 O4' _chem_comp.formula_weight 280.359 _chem_comp.id 3MX _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3,4,5-trihydroxyphenyl)decan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C7 3MX sing 1 n n O12 C1 3MX doub 2 n n C8 C7 3MX doub 3 n y C8 C3 3MX sing 4 n y C14 C15 3MX sing 5 n n C14 C13 3MX sing 6 n n C7 C6 3MX sing 7 n y C1 C13 3MX sing 8 n n C1 C3 3MX sing 9 n n C15 C16 3MX sing 10 n n C16 C17 3MX sing 11 n n C21 C20 3MX sing 12 n n C3 C4 3MX doub 13 n y C20 C19 3MX sing 14 n n C6 O10 3MX sing 15 n n C6 C5 3MX doub 16 n y C17 C18 3MX sing 17 n n C4 C5 3MX sing 18 n y C19 C18 3MX sing 19 n n C5 O9 3MX sing 20 n n C4 H1 3MX sing 21 n n C8 H2 3MX sing 22 n n O9 H3 3MX sing 23 n n O10 H4 3MX sing 24 n n O11 H5 3MX sing 25 n n C13 H6 3MX sing 26 n n C13 H7 3MX sing 27 n n C14 H8 3MX sing 28 n n C14 H9 3MX sing 29 n n C15 H10 3MX sing 30 n n C15 H11 3MX sing 31 n n C16 H12 3MX sing 32 n n C16 H13 3MX sing 33 n n C17 H14 3MX sing 34 n n C17 H15 3MX sing 35 n n C18 H16 3MX sing 36 n n C19 H17 3MX sing 37 n n C20 H18 3MX sing 38 n n C20 H19 3MX sing 39 n n C21 H20 3MX sing 40 n n C21 H21 3MX sing 41 n n C21 H22 3MX sing 42 n n C18 H23 3MX sing 43 n n C19 H24 3MX sing 44 n n # _atom_sites.entry_id 4WHF _atom_sites.fract_transf_matrix[1][1] 0.013445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 301 301 GOL GOL . D 2 GOL A 1 301 302 GOL GOL . E 3 3MX A 1 302 1 3MX 007 . F 2 GOL A 1 303 1 GOL GOL . G 2 GOL A 1 304 3 GOL GOL . H 2 GOL A 1 305 4 GOL GOL . I 4 HOH B 1 401 89 HOH HOH . I 4 HOH B 2 402 82 HOH HOH . I 4 HOH B 3 403 196 HOH HOH . I 4 HOH B 4 404 38 HOH HOH . I 4 HOH B 5 405 137 HOH HOH . I 4 HOH B 6 406 203 HOH HOH . I 4 HOH B 7 407 33 HOH HOH . I 4 HOH B 8 408 7 HOH HOH . I 4 HOH B 9 409 152 HOH HOH . I 4 HOH B 10 410 150 HOH HOH . I 4 HOH B 11 411 107 HOH HOH . I 4 HOH B 12 412 189 HOH HOH . I 4 HOH B 13 413 19 HOH HOH . I 4 HOH B 14 414 111 HOH HOH . I 4 HOH B 15 415 79 HOH HOH . I 4 HOH B 16 416 60 HOH HOH . I 4 HOH B 17 417 142 HOH HOH . I 4 HOH B 18 418 145 HOH HOH . I 4 HOH B 19 419 63 HOH HOH . I 4 HOH B 20 420 81 HOH HOH . I 4 HOH B 21 421 138 HOH HOH . I 4 HOH B 22 422 140 HOH HOH . I 4 HOH B 23 423 43 HOH HOH . I 4 HOH B 24 424 25 HOH HOH . I 4 HOH B 25 425 113 HOH HOH . I 4 HOH B 26 426 24 HOH HOH . I 4 HOH B 27 427 194 HOH HOH . I 4 HOH B 28 428 149 HOH HOH . I 4 HOH B 29 429 114 HOH HOH . I 4 HOH B 30 430 109 HOH HOH . I 4 HOH B 31 431 72 HOH HOH . I 4 HOH B 32 432 21 HOH HOH . I 4 HOH B 33 433 6 HOH HOH . I 4 HOH B 34 434 168 HOH HOH . I 4 HOH B 35 435 177 HOH HOH . I 4 HOH B 36 436 36 HOH HOH . I 4 HOH B 37 437 74 HOH HOH . I 4 HOH B 38 438 37 HOH HOH . I 4 HOH B 39 439 95 HOH HOH . I 4 HOH B 40 440 11 HOH HOH . I 4 HOH B 41 441 147 HOH HOH . I 4 HOH B 42 442 118 HOH HOH . I 4 HOH B 43 443 207 HOH HOH . I 4 HOH B 44 444 141 HOH HOH . I 4 HOH B 45 445 84 HOH HOH . I 4 HOH B 46 446 115 HOH HOH . I 4 HOH B 47 447 83 HOH HOH . I 4 HOH B 48 448 66 HOH HOH . I 4 HOH B 49 449 73 HOH HOH . I 4 HOH B 50 450 119 HOH HOH . I 4 HOH B 51 451 50 HOH HOH . I 4 HOH B 52 452 3 HOH HOH . I 4 HOH B 53 453 204 HOH HOH . I 4 HOH B 54 454 199 HOH HOH . I 4 HOH B 55 455 132 HOH HOH . I 4 HOH B 56 456 23 HOH HOH . I 4 HOH B 57 457 26 HOH HOH . I 4 HOH B 58 458 56 HOH HOH . I 4 HOH B 59 459 205 HOH HOH . I 4 HOH B 60 460 67 HOH HOH . I 4 HOH B 61 461 157 HOH HOH . I 4 HOH B 62 462 183 HOH HOH . I 4 HOH B 63 463 159 HOH HOH . I 4 HOH B 64 464 161 HOH HOH . I 4 HOH B 65 465 87 HOH HOH . I 4 HOH B 66 466 167 HOH HOH . I 4 HOH B 67 467 180 HOH HOH . I 4 HOH B 68 468 61 HOH HOH . I 4 HOH B 69 469 164 HOH HOH . I 4 HOH B 70 470 143 HOH HOH . I 4 HOH B 71 471 52 HOH HOH . I 4 HOH B 72 472 100 HOH HOH . I 4 HOH B 73 473 144 HOH HOH . I 4 HOH B 74 474 211 HOH HOH . I 4 HOH B 75 475 101 HOH HOH . J 4 HOH A 1 401 97 HOH HOH . J 4 HOH A 2 402 105 HOH HOH . J 4 HOH A 3 403 181 HOH HOH . J 4 HOH A 4 404 120 HOH HOH . J 4 HOH A 5 405 77 HOH HOH . J 4 HOH A 6 406 155 HOH HOH . J 4 HOH A 7 407 151 HOH HOH . J 4 HOH A 8 408 4 HOH HOH . J 4 HOH A 9 409 64 HOH HOH . J 4 HOH A 10 410 153 HOH HOH . J 4 HOH A 11 411 91 HOH HOH . J 4 HOH A 12 412 108 HOH HOH . J 4 HOH A 13 413 93 HOH HOH . J 4 HOH A 14 414 20 HOH HOH . J 4 HOH A 15 415 10 HOH HOH . J 4 HOH A 16 416 30 HOH HOH . J 4 HOH A 17 417 125 HOH HOH . J 4 HOH A 18 418 172 HOH HOH . J 4 HOH A 19 419 193 HOH HOH . J 4 HOH A 20 420 124 HOH HOH . J 4 HOH A 21 421 202 HOH HOH . J 4 HOH A 22 422 53 HOH HOH . J 4 HOH A 23 423 184 HOH HOH . J 4 HOH A 24 424 27 HOH HOH . J 4 HOH A 25 425 35 HOH HOH . J 4 HOH A 26 426 31 HOH HOH . J 4 HOH A 27 427 191 HOH HOH . J 4 HOH A 28 428 8 HOH HOH . J 4 HOH A 29 429 170 HOH HOH . J 4 HOH A 30 430 187 HOH HOH . J 4 HOH A 31 431 5 HOH HOH . J 4 HOH A 32 432 90 HOH HOH . J 4 HOH A 33 433 146 HOH HOH . J 4 HOH A 34 434 15 HOH HOH . J 4 HOH A 35 435 32 HOH HOH . J 4 HOH A 36 436 68 HOH HOH . J 4 HOH A 37 437 201 HOH HOH . J 4 HOH A 38 438 185 HOH HOH . J 4 HOH A 39 439 13 HOH HOH . J 4 HOH A 40 440 208 HOH HOH . J 4 HOH A 41 441 131 HOH HOH . J 4 HOH A 42 442 123 HOH HOH . J 4 HOH A 43 443 98 HOH HOH . J 4 HOH A 44 444 46 HOH HOH . J 4 HOH A 45 445 1 HOH HOH . J 4 HOH A 46 446 55 HOH HOH . J 4 HOH A 47 447 103 HOH HOH . J 4 HOH A 48 448 117 HOH HOH . J 4 HOH A 49 449 127 HOH HOH . J 4 HOH A 50 450 54 HOH HOH . J 4 HOH A 51 451 17 HOH HOH . J 4 HOH A 52 452 48 HOH HOH . J 4 HOH A 53 453 209 HOH HOH . J 4 HOH A 54 454 96 HOH HOH . J 4 HOH A 55 455 178 HOH HOH . J 4 HOH A 56 456 130 HOH HOH . J 4 HOH A 57 457 51 HOH HOH . J 4 HOH A 58 458 22 HOH HOH . J 4 HOH A 59 459 62 HOH HOH . J 4 HOH A 60 460 129 HOH HOH . J 4 HOH A 61 461 154 HOH HOH . J 4 HOH A 62 462 176 HOH HOH . J 4 HOH A 63 463 122 HOH HOH . J 4 HOH A 64 464 158 HOH HOH . J 4 HOH A 65 465 14 HOH HOH . J 4 HOH A 66 466 40 HOH HOH . J 4 HOH A 67 467 9 HOH HOH . J 4 HOH A 68 468 80 HOH HOH . J 4 HOH A 69 469 102 HOH HOH . J 4 HOH A 70 470 179 HOH HOH . J 4 HOH A 71 471 139 HOH HOH . J 4 HOH A 72 472 110 HOH HOH . J 4 HOH A 73 473 12 HOH HOH . J 4 HOH A 74 474 116 HOH HOH . J 4 HOH A 75 475 34 HOH HOH . J 4 HOH A 76 476 75 HOH HOH . J 4 HOH A 77 477 134 HOH HOH . J 4 HOH A 78 478 47 HOH HOH . J 4 HOH A 79 479 148 HOH HOH . J 4 HOH A 80 480 200 HOH HOH . J 4 HOH A 81 481 136 HOH HOH . J 4 HOH A 82 482 94 HOH HOH . J 4 HOH A 83 483 85 HOH HOH . J 4 HOH A 84 484 210 HOH HOH . J 4 HOH A 85 485 175 HOH HOH . J 4 HOH A 86 486 44 HOH HOH . J 4 HOH A 87 487 174 HOH HOH . J 4 HOH A 88 488 126 HOH HOH . J 4 HOH A 89 489 92 HOH HOH . J 4 HOH A 90 490 188 HOH HOH . J 4 HOH A 91 491 206 HOH HOH . J 4 HOH A 92 492 88 HOH HOH . J 4 HOH A 93 493 2 HOH HOH . J 4 HOH A 94 494 86 HOH HOH . J 4 HOH A 95 495 169 HOH HOH . J 4 HOH A 96 496 39 HOH HOH . J 4 HOH A 97 497 182 HOH HOH . J 4 HOH A 98 498 192 HOH HOH . J 4 HOH A 99 499 106 HOH HOH . J 4 HOH A 100 500 18 HOH HOH . J 4 HOH A 101 501 57 HOH HOH . J 4 HOH A 102 502 133 HOH HOH . J 4 HOH A 103 503 186 HOH HOH . J 4 HOH A 104 504 121 HOH HOH . J 4 HOH A 105 505 162 HOH HOH . J 4 HOH A 106 506 198 HOH HOH . J 4 HOH A 107 507 163 HOH HOH . J 4 HOH A 108 508 160 HOH HOH . J 4 HOH A 109 509 135 HOH HOH . J 4 HOH A 110 510 156 HOH HOH . J 4 HOH A 111 511 99 HOH HOH . J 4 HOH A 112 512 166 HOH HOH . J 4 HOH A 113 513 104 HOH HOH . J 4 HOH A 114 514 165 HOH HOH . J 4 HOH A 115 515 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3MX . . . E 3 -12.639 -20.065 -5.082 1 67.03 ? C1 3MX 302 A 1 HETATM 2 C C3 3MX . . . E 3 -13.929 -19.486 -4.677 1 66.81 ? C3 3MX 302 A 1 HETATM 3 C C4 3MX . . . E 3 -14.276 -19.508 -3.349 1 71.68 ? C4 3MX 302 A 1 HETATM 4 C C5 3MX . . . E 3 -15.477 -18.943 -2.984 1 76.75 ? C5 3MX 302 A 1 HETATM 5 C C6 3MX . . . E 3 -16.29 -18.362 -3.973 1 70.09 ? C6 3MX 302 A 1 HETATM 6 C C7 3MX . . . E 3 -15.946 -18.324 -5.335 1 69.28 ? C7 3MX 302 A 1 HETATM 7 C C8 3MX . . . E 3 -14.727 -18.908 -5.659 1 66.24 ? C8 3MX 302 A 1 HETATM 8 O O9 3MX . . . E 3 -15.828 -18.988 -1.652 1 79.37 ? O9 3MX 302 A 1 HETATM 9 O O10 3MX . . . E 3 -17.461 -17.826 -3.582 1 70.26 ? O10 3MX 302 A 1 HETATM 10 O O11 3MX . . . E 3 -16.728 -17.737 -6.337 1 47.3 ? O11 3MX 302 A 1 HETATM 11 O O12 3MX . . . E 3 -11.865 -19.33 -5.656 1 73.2 ? O12 3MX 302 A 1 HETATM 12 C C13 3MX . . . E 3 -12.327 -21.499 -4.768 1 68.39 ? C13 3MX 302 A 1 HETATM 13 C C14 3MX . . . E 3 -10.953 -21.884 -5.295 1 63.03 ? C14 3MX 302 A 1 HETATM 14 C C15 3MX . . . E 3 -9.912 -20.814 -4.973 1 57.01 ? C15 3MX 302 A 1 HETATM 15 C C16 3MX . . . E 3 -8.544 -21.448 -4.951 1 54.16 ? C16 3MX 302 A 1 HETATM 16 C C17 3MX . . . E 3 -7.655 -20.961 -3.851 1 51.45 ? C17 3MX 302 A 1 HETATM 17 C C18 3MX . . . E 3 -7.471 -22.082 -2.843 1 50.61 ? C18 3MX 302 A 1 HETATM 18 C C19 3MX . . . E 3 -6.413 -23.101 -3.21 1 51.8 ? C19 3MX 302 A 1 HETATM 19 C C20 3MX . . . E 3 -5.816 -23.018 -4.61 1 57.02 ? C20 3MX 302 A 1 HETATM 20 C C21 3MX . . . E 3 -5.037 -24.278 -4.899 1 56.51 ? C21 3MX 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #