data_4WK6
#
_model_server_result.job_id            SKlgN5fx1H1etXBRrEBi7Q 
_model_server_result.datetime_utc      '2024-12-16 19:51:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wk6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4WK6 
#
_exptl.entry_id    4WK6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WK6 
_cell.length_a            79.904 
_cell.length_b            110.337 
_cell.length_c            117.482 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WK6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 261 n n 
PA O2A NDP sing 262 n n 
PA O5B NDP sing 263 n n 
PA O3 NDP sing 264 n n 
O2A HOA2 NDP sing 265 n n 
O5B C5B NDP sing 266 n n 
C5B C4B NDP sing 267 n n 
C5B H51A NDP sing 268 n n 
C5B H52A NDP sing 269 n n 
C4B O4B NDP sing 270 n n 
C4B C3B NDP sing 271 n n 
C4B H4B NDP sing 272 n n 
O4B C1B NDP sing 273 n n 
C3B O3B NDP sing 274 n n 
C3B C2B NDP sing 275 n n 
C3B H3B NDP sing 276 n n 
O3B HO3A NDP sing 277 n n 
C2B O2B NDP sing 278 n n 
C2B C1B NDP sing 279 n n 
C2B H2B NDP sing 280 n n 
O2B P2B NDP sing 281 n n 
C1B N9A NDP sing 282 n n 
C1B H1B NDP sing 283 n n 
N9A C8A NDP sing 284 n y 
N9A C4A NDP sing 285 n y 
C8A N7A NDP doub 286 n y 
C8A H8A NDP sing 287 n n 
N7A C5A NDP sing 288 n y 
C5A C6A NDP sing 289 n y 
C5A C4A NDP doub 290 n y 
C6A N6A NDP sing 291 n n 
C6A N1A NDP doub 292 n y 
N6A H61A NDP sing 293 n n 
N6A H62A NDP sing 294 n n 
N1A C2A NDP sing 295 n y 
C2A N3A NDP doub 296 n y 
C2A H2A NDP sing 297 n n 
N3A C4A NDP sing 298 n y 
O3 PN NDP sing 299 n n 
PN O1N NDP doub 300 n n 
PN O2N NDP sing 301 n n 
PN O5D NDP sing 302 n n 
O2N H21N NDP sing 303 n n 
O5D C5D NDP sing 304 n n 
C5D C4D NDP sing 305 n n 
C5D H51N NDP sing 306 n n 
C5D H52N NDP sing 307 n n 
C4D O4D NDP sing 308 n n 
C4D C3D NDP sing 309 n n 
C4D H4D NDP sing 310 n n 
O4D C1D NDP sing 311 n n 
C3D O3D NDP sing 312 n n 
C3D C2D NDP sing 313 n n 
C3D H3D NDP sing 314 n n 
O3D HO3N NDP sing 315 n n 
C2D O2D NDP sing 316 n n 
C2D C1D NDP sing 317 n n 
C2D H2D NDP sing 318 n n 
O2D HO2N NDP sing 319 n n 
C1D N1N NDP sing 320 n n 
C1D H1D NDP sing 321 n n 
N1N C2N NDP sing 322 n n 
N1N C6N NDP sing 323 n n 
C2N C3N NDP doub 324 n n 
C2N H2N NDP sing 325 n n 
C3N C7N NDP sing 326 n n 
C3N C4N NDP sing 327 n n 
C7N O7N NDP doub 328 n n 
C7N N7N NDP sing 329 n n 
N7N H71N NDP sing 330 n n 
N7N H72N NDP sing 331 n n 
C4N C5N NDP sing 332 n n 
C4N H41N NDP sing 333 n n 
C4N H42N NDP sing 334 n n 
C5N C6N NDP doub 335 n n 
C5N H5N NDP sing 336 n n 
C6N H6N NDP sing 337 n n 
P2B O1X NDP doub 338 n n 
P2B O2X NDP sing 339 n n 
P2B O3X NDP sing 340 n n 
O2X HOP2 NDP sing 341 n n 
O3X HOP3 NDP sing 342 n n 
#
_atom_sites.entry_id                     4WK6 
_atom_sites.fract_transf_matrix[1][1]    0.012515 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 301 308 NDP NDP . 
F 2 NDP B 1 301 309 NDP NDP . 
G 2 NDP C 1 301 308 NDP NDP . 
H 2 NDP D 1 301 308 NDP NDP . 
I 3 1PE D 1 302 1 1PE 1PE . 
J 4 HOH A 1 401 40 HOH HOH . 
J 4 HOH A 2 402 4 HOH HOH . 
J 4 HOH A 3 403 6 HOH HOH . 
J 4 HOH A 4 404 10 HOH HOH . 
J 4 HOH A 5 405 11 HOH HOH . 
J 4 HOH A 6 406 22 HOH HOH . 
J 4 HOH A 7 407 23 HOH HOH . 
J 4 HOH A 8 408 35 HOH HOH . 
J 4 HOH A 9 409 36 HOH HOH . 
J 4 HOH A 10 410 38 HOH HOH . 
J 4 HOH A 11 411 46 HOH HOH . 
J 4 HOH A 12 412 54 HOH HOH . 
J 4 HOH A 13 413 62 HOH HOH . 
J 4 HOH A 14 414 66 HOH HOH . 
J 4 HOH A 15 415 71 HOH HOH . 
J 4 HOH A 16 416 74 HOH HOH . 
J 4 HOH A 17 417 80 HOH HOH . 
J 4 HOH A 18 418 89 HOH HOH . 
J 4 HOH A 19 419 95 HOH HOH . 
J 4 HOH A 20 420 101 HOH HOH . 
J 4 HOH A 21 421 103 HOH HOH . 
J 4 HOH A 22 422 104 HOH HOH . 
J 4 HOH A 23 423 109 HOH HOH . 
J 4 HOH A 24 424 113 HOH HOH . 
J 4 HOH A 25 425 118 HOH HOH . 
J 4 HOH A 26 426 129 HOH HOH . 
K 4 HOH B 1 401 63 HOH HOH . 
K 4 HOH B 2 402 1 HOH HOH . 
K 4 HOH B 3 403 5 HOH HOH . 
K 4 HOH B 4 404 12 HOH HOH . 
K 4 HOH B 5 405 16 HOH HOH . 
K 4 HOH B 6 406 19 HOH HOH . 
K 4 HOH B 7 407 21 HOH HOH . 
K 4 HOH B 8 408 27 HOH HOH . 
K 4 HOH B 9 409 28 HOH HOH . 
K 4 HOH B 10 410 32 HOH HOH . 
K 4 HOH B 11 411 41 HOH HOH . 
K 4 HOH B 12 412 53 HOH HOH . 
K 4 HOH B 13 413 60 HOH HOH . 
K 4 HOH B 14 414 64 HOH HOH . 
K 4 HOH B 15 415 65 HOH HOH . 
K 4 HOH B 16 416 75 HOH HOH . 
K 4 HOH B 17 417 78 HOH HOH . 
K 4 HOH B 18 418 79 HOH HOH . 
K 4 HOH B 19 419 81 HOH HOH . 
K 4 HOH B 20 420 83 HOH HOH . 
K 4 HOH B 21 421 88 HOH HOH . 
K 4 HOH B 22 422 91 HOH HOH . 
K 4 HOH B 23 423 92 HOH HOH . 
K 4 HOH B 24 424 94 HOH HOH . 
K 4 HOH B 25 425 105 HOH HOH . 
K 4 HOH B 26 426 107 HOH HOH . 
K 4 HOH B 27 427 108 HOH HOH . 
K 4 HOH B 28 428 130 HOH HOH . 
L 4 HOH C 1 401 15 HOH HOH . 
L 4 HOH C 2 402 37 HOH HOH . 
L 4 HOH C 3 403 7 HOH HOH . 
L 4 HOH C 4 404 9 HOH HOH . 
L 4 HOH C 5 405 13 HOH HOH . 
L 4 HOH C 6 406 14 HOH HOH . 
L 4 HOH C 7 407 25 HOH HOH . 
L 4 HOH C 8 408 26 HOH HOH . 
L 4 HOH C 9 409 29 HOH HOH . 
L 4 HOH C 10 410 34 HOH HOH . 
L 4 HOH C 11 411 44 HOH HOH . 
L 4 HOH C 12 412 50 HOH HOH . 
L 4 HOH C 13 413 51 HOH HOH . 
L 4 HOH C 14 414 52 HOH HOH . 
L 4 HOH C 15 415 61 HOH HOH . 
L 4 HOH C 16 416 68 HOH HOH . 
L 4 HOH C 17 417 69 HOH HOH . 
L 4 HOH C 18 418 72 HOH HOH . 
L 4 HOH C 19 419 73 HOH HOH . 
L 4 HOH C 20 420 84 HOH HOH . 
L 4 HOH C 21 421 86 HOH HOH . 
L 4 HOH C 22 422 93 HOH HOH . 
L 4 HOH C 23 423 102 HOH HOH . 
L 4 HOH C 24 424 106 HOH HOH . 
L 4 HOH C 25 425 119 HOH HOH . 
L 4 HOH C 26 426 122 HOH HOH . 
L 4 HOH C 27 427 126 HOH HOH . 
L 4 HOH C 28 428 127 HOH HOH . 
L 4 HOH C 29 429 128 HOH HOH . 
M 4 HOH D 1 401 17 HOH HOH . 
M 4 HOH D 2 402 20 HOH HOH . 
M 4 HOH D 3 403 24 HOH HOH . 
M 4 HOH D 4 404 30 HOH HOH . 
M 4 HOH D 5 405 55 HOH HOH . 
M 4 HOH D 6 406 59 HOH HOH . 
M 4 HOH D 7 407 70 HOH HOH . 
M 4 HOH D 8 408 87 HOH HOH . 
M 4 HOH D 9 409 90 HOH HOH . 
M 4 HOH D 10 410 100 HOH HOH . 
M 4 HOH D 11 411 110 HOH HOH . 
M 4 HOH D 12 412 112 HOH HOH . 
M 4 HOH D 13 413 114 HOH HOH . 
M 4 HOH D 14 414 115 HOH HOH . 
M 4 HOH D 15 415 117 HOH HOH . 
M 4 HOH D 16 416 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . E 2 1.332 45.013 13.671 0.7 101.65 ? PA NDP 301 A 1 
HETATM 2 O O1A NDP . . . E 2 0.137 45.328 12.777 0.7 86.28 ? O1A NDP 301 A 1 
HETATM 3 O O2A NDP . . . E 2 1.081 44.652 15.13 0.7 91.94 ? O2A NDP 301 A 1 
HETATM 4 O O5B NDP . . . E 2 2.33 43.944 12.949 0.7 88.04 ? O5B NDP 301 A 1 
HETATM 5 C C5B NDP . . . E 2 2.021 42.614 12.493 0.7 81.92 ? C5B NDP 301 A 1 
HETATM 6 C C4B NDP . . . E 2 1.732 42.446 10.982 0.7 86.82 ? C4B NDP 301 A 1 
HETATM 7 O O4B NDP . . . E 2 0.35 42.128 10.734 0.7 82.25 ? O4B NDP 301 A 1 
HETATM 8 C C3B NDP . . . E 2 2.068 43.606 10.021 0.7 86.24 ? C3B NDP 301 A 1 
HETATM 9 O O3B NDP . . . E 2 3.104 43.233 9.095 0.7 82.03 ? O3B NDP 301 A 1 
HETATM 10 C C2B NDP . . . E 2 0.765 43.899 9.289 0.7 85.47 ? C2B NDP 301 A 1 
HETATM 11 O O2B NDP . . . E 2 0.919 44.319 7.927 0.7 76.93 ? O2B NDP 301 A 1 
HETATM 12 C C1B NDP . . . E 2 0.001 42.599 9.424 0.7 83.46 ? C1B NDP 301 A 1 
HETATM 13 N N9A NDP . . . E 2 -1.447 42.842 9.255 0.7 76.21 ? N9A NDP 301 A 1 
HETATM 14 C C8A NDP . . . E 2 -2.22 43.753 9.899 0.7 72.13 ? C8A NDP 301 A 1 
HETATM 15 N N7A NDP . . . E 2 -3.511 43.67 9.481 0.7 67.54 ? N7A NDP 301 A 1 
HETATM 16 C C5A NDP . . . E 2 -3.568 42.692 8.556 0.7 62.62 ? C5A NDP 301 A 1 
HETATM 17 C C6A NDP . . . E 2 -4.614 42.101 7.698 0.7 59.69 ? C6A NDP 301 A 1 
HETATM 18 N N6A NDP . . . E 2 -5.874 42.567 7.794 0.7 61.84 ? N6A NDP 301 A 1 
HETATM 19 N N1A NDP . . . E 2 -4.265 41.108 6.827 0.7 53.33 ? N1A NDP 301 A 1 
HETATM 20 C C2A NDP . . . E 2 -2.98 40.656 6.767 0.7 55.1 ? C2A NDP 301 A 1 
HETATM 21 N N3A NDP . . . E 2 -1.953 41.143 7.528 0.7 61.87 ? N3A NDP 301 A 1 
HETATM 22 C C4A NDP . . . E 2 -2.196 42.15 8.411 0.7 68.26 ? C4A NDP 301 A 1 
HETATM 23 O O3 NDP . . . E 2 2.321 46.287 13.674 0.7 85.69 ? O3 NDP 301 A 1 
HETATM 24 P P2B NDP . . . E 2 1.419 45.838 7.707 0.7 79.72 ? P2B NDP 301 A 1 
HETATM 25 O O1X NDP . . . E 2 1.161 46.145 6.246 0.7 71.91 ? O1X NDP 301 A 1 
HETATM 26 O O2X NDP . . . E 2 0.541 46.578 8.697 0.7 70.87 ? O2X NDP 301 A 1 
HETATM 27 O O3X NDP . . . E 2 2.891 45.821 8.058 0.7 66.42 ? O3X NDP 301 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           539 
_model_server_stats.encode_time_ms          55 
_model_server_stats.element_count           27 
#