data_4WK6 # _model_server_result.job_id GzPOskciTpn07iZTihyqAA _model_server_result.datetime_utc '2024-12-10 14:38:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4WK6 # _exptl.entry_id 4WK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WK6 _cell.length_a 79.904 _cell.length_b 110.337 _cell.length_c 117.482 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 261 n n PA O2A NDP sing 262 n n PA O5B NDP sing 263 n n PA O3 NDP sing 264 n n O2A HOA2 NDP sing 265 n n O5B C5B NDP sing 266 n n C5B C4B NDP sing 267 n n C5B H51A NDP sing 268 n n C5B H52A NDP sing 269 n n C4B O4B NDP sing 270 n n C4B C3B NDP sing 271 n n C4B H4B NDP sing 272 n n O4B C1B NDP sing 273 n n C3B O3B NDP sing 274 n n C3B C2B NDP sing 275 n n C3B H3B NDP sing 276 n n O3B HO3A NDP sing 277 n n C2B O2B NDP sing 278 n n C2B C1B NDP sing 279 n n C2B H2B NDP sing 280 n n O2B P2B NDP sing 281 n n C1B N9A NDP sing 282 n n C1B H1B NDP sing 283 n n N9A C8A NDP sing 284 n y N9A C4A NDP sing 285 n y C8A N7A NDP doub 286 n y C8A H8A NDP sing 287 n n N7A C5A NDP sing 288 n y C5A C6A NDP sing 289 n y C5A C4A NDP doub 290 n y C6A N6A NDP sing 291 n n C6A N1A NDP doub 292 n y N6A H61A NDP sing 293 n n N6A H62A NDP sing 294 n n N1A C2A NDP sing 295 n y C2A N3A NDP doub 296 n y C2A H2A NDP sing 297 n n N3A C4A NDP sing 298 n y O3 PN NDP sing 299 n n PN O1N NDP doub 300 n n PN O2N NDP sing 301 n n PN O5D NDP sing 302 n n O2N H21N NDP sing 303 n n O5D C5D NDP sing 304 n n C5D C4D NDP sing 305 n n C5D H51N NDP sing 306 n n C5D H52N NDP sing 307 n n C4D O4D NDP sing 308 n n C4D C3D NDP sing 309 n n C4D H4D NDP sing 310 n n O4D C1D NDP sing 311 n n C3D O3D NDP sing 312 n n C3D C2D NDP sing 313 n n C3D H3D NDP sing 314 n n O3D HO3N NDP sing 315 n n C2D O2D NDP sing 316 n n C2D C1D NDP sing 317 n n C2D H2D NDP sing 318 n n O2D HO2N NDP sing 319 n n C1D N1N NDP sing 320 n n C1D H1D NDP sing 321 n n N1N C2N NDP sing 322 n n N1N C6N NDP sing 323 n n C2N C3N NDP doub 324 n n C2N H2N NDP sing 325 n n C3N C7N NDP sing 326 n n C3N C4N NDP sing 327 n n C7N O7N NDP doub 328 n n C7N N7N NDP sing 329 n n N7N H71N NDP sing 330 n n N7N H72N NDP sing 331 n n C4N C5N NDP sing 332 n n C4N H41N NDP sing 333 n n C4N H42N NDP sing 334 n n C5N C6N NDP doub 335 n n C5N H5N NDP sing 336 n n C6N H6N NDP sing 337 n n P2B O1X NDP doub 338 n n P2B O2X NDP sing 339 n n P2B O3X NDP sing 340 n n O2X HOP2 NDP sing 341 n n O3X HOP3 NDP sing 342 n n # _atom_sites.entry_id 4WK6 _atom_sites.fract_transf_matrix[1][1] 0.012515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 301 308 NDP NDP . F 2 NDP B 1 301 309 NDP NDP . G 2 NDP C 1 301 308 NDP NDP . H 2 NDP D 1 301 308 NDP NDP . I 3 1PE D 1 302 1 1PE 1PE . J 4 HOH A 1 401 40 HOH HOH . J 4 HOH A 2 402 4 HOH HOH . J 4 HOH A 3 403 6 HOH HOH . J 4 HOH A 4 404 10 HOH HOH . J 4 HOH A 5 405 11 HOH HOH . J 4 HOH A 6 406 22 HOH HOH . J 4 HOH A 7 407 23 HOH HOH . J 4 HOH A 8 408 35 HOH HOH . J 4 HOH A 9 409 36 HOH HOH . J 4 HOH A 10 410 38 HOH HOH . J 4 HOH A 11 411 46 HOH HOH . J 4 HOH A 12 412 54 HOH HOH . J 4 HOH A 13 413 62 HOH HOH . J 4 HOH A 14 414 66 HOH HOH . J 4 HOH A 15 415 71 HOH HOH . J 4 HOH A 16 416 74 HOH HOH . J 4 HOH A 17 417 80 HOH HOH . J 4 HOH A 18 418 89 HOH HOH . J 4 HOH A 19 419 95 HOH HOH . J 4 HOH A 20 420 101 HOH HOH . J 4 HOH A 21 421 103 HOH HOH . J 4 HOH A 22 422 104 HOH HOH . J 4 HOH A 23 423 109 HOH HOH . J 4 HOH A 24 424 113 HOH HOH . J 4 HOH A 25 425 118 HOH HOH . J 4 HOH A 26 426 129 HOH HOH . K 4 HOH B 1 401 63 HOH HOH . K 4 HOH B 2 402 1 HOH HOH . K 4 HOH B 3 403 5 HOH HOH . K 4 HOH B 4 404 12 HOH HOH . K 4 HOH B 5 405 16 HOH HOH . K 4 HOH B 6 406 19 HOH HOH . K 4 HOH B 7 407 21 HOH HOH . K 4 HOH B 8 408 27 HOH HOH . K 4 HOH B 9 409 28 HOH HOH . K 4 HOH B 10 410 32 HOH HOH . K 4 HOH B 11 411 41 HOH HOH . K 4 HOH B 12 412 53 HOH HOH . K 4 HOH B 13 413 60 HOH HOH . K 4 HOH B 14 414 64 HOH HOH . K 4 HOH B 15 415 65 HOH HOH . K 4 HOH B 16 416 75 HOH HOH . K 4 HOH B 17 417 78 HOH HOH . K 4 HOH B 18 418 79 HOH HOH . K 4 HOH B 19 419 81 HOH HOH . K 4 HOH B 20 420 83 HOH HOH . K 4 HOH B 21 421 88 HOH HOH . K 4 HOH B 22 422 91 HOH HOH . K 4 HOH B 23 423 92 HOH HOH . K 4 HOH B 24 424 94 HOH HOH . K 4 HOH B 25 425 105 HOH HOH . K 4 HOH B 26 426 107 HOH HOH . K 4 HOH B 27 427 108 HOH HOH . K 4 HOH B 28 428 130 HOH HOH . L 4 HOH C 1 401 15 HOH HOH . L 4 HOH C 2 402 37 HOH HOH . L 4 HOH C 3 403 7 HOH HOH . L 4 HOH C 4 404 9 HOH HOH . L 4 HOH C 5 405 13 HOH HOH . L 4 HOH C 6 406 14 HOH HOH . L 4 HOH C 7 407 25 HOH HOH . L 4 HOH C 8 408 26 HOH HOH . L 4 HOH C 9 409 29 HOH HOH . L 4 HOH C 10 410 34 HOH HOH . L 4 HOH C 11 411 44 HOH HOH . L 4 HOH C 12 412 50 HOH HOH . L 4 HOH C 13 413 51 HOH HOH . L 4 HOH C 14 414 52 HOH HOH . L 4 HOH C 15 415 61 HOH HOH . L 4 HOH C 16 416 68 HOH HOH . L 4 HOH C 17 417 69 HOH HOH . L 4 HOH C 18 418 72 HOH HOH . L 4 HOH C 19 419 73 HOH HOH . L 4 HOH C 20 420 84 HOH HOH . L 4 HOH C 21 421 86 HOH HOH . L 4 HOH C 22 422 93 HOH HOH . L 4 HOH C 23 423 102 HOH HOH . L 4 HOH C 24 424 106 HOH HOH . L 4 HOH C 25 425 119 HOH HOH . L 4 HOH C 26 426 122 HOH HOH . L 4 HOH C 27 427 126 HOH HOH . L 4 HOH C 28 428 127 HOH HOH . L 4 HOH C 29 429 128 HOH HOH . M 4 HOH D 1 401 17 HOH HOH . M 4 HOH D 2 402 20 HOH HOH . M 4 HOH D 3 403 24 HOH HOH . M 4 HOH D 4 404 30 HOH HOH . M 4 HOH D 5 405 55 HOH HOH . M 4 HOH D 6 406 59 HOH HOH . M 4 HOH D 7 407 70 HOH HOH . M 4 HOH D 8 408 87 HOH HOH . M 4 HOH D 9 409 90 HOH HOH . M 4 HOH D 10 410 100 HOH HOH . M 4 HOH D 11 411 110 HOH HOH . M 4 HOH D 12 412 112 HOH HOH . M 4 HOH D 13 413 114 HOH HOH . M 4 HOH D 14 414 115 HOH HOH . M 4 HOH D 15 415 117 HOH HOH . M 4 HOH D 16 416 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . G 2 -4.47 25.823 60.24 0.5 72.81 ? PA NDP 301 C 1 HETATM 2 O O1A NDP . . . G 2 -4.138 26.017 58.674 0.5 63.36 ? O1A NDP 301 C 1 HETATM 3 O O2A NDP . . . G 2 -3.318 26.437 61.002 0.5 64.87 ? O2A NDP 301 C 1 HETATM 4 O O5B NDP . . . G 2 -4.475 24.203 60.343 1 85.59 ? O5B NDP 301 C 1 HETATM 5 C C5B NDP . . . G 2 -5.546 23.53 59.65 1 70.24 ? C5B NDP 301 C 1 HETATM 6 C C4B NDP . . . G 2 -6.026 22.214 60.257 1 68.98 ? C4B NDP 301 C 1 HETATM 7 O O4B NDP . . . G 2 -5.143 21.128 59.92 1 71.28 ? O4B NDP 301 C 1 HETATM 8 C C3B NDP . . . G 2 -6.123 22.207 61.774 1 63.08 ? C3B NDP 301 C 1 HETATM 9 O O3B NDP . . . G 2 -7.415 21.686 62.138 1 55.79 ? O3B NDP 301 C 1 HETATM 10 C C2B NDP . . . G 2 -5.022 21.251 62.217 1 61.57 ? C2B NDP 301 C 1 HETATM 11 O O2B NDP . . . G 2 -5.367 20.548 63.419 1 70.35 ? O2B NDP 301 C 1 HETATM 12 C C1B NDP . . . G 2 -4.972 20.265 61.053 1 60.18 ? C1B NDP 301 C 1 HETATM 13 N N9A NDP . . . G 2 -3.735 19.412 61.006 1 46.05 ? N9A NDP 301 C 1 HETATM 14 C C8A NDP . . . G 2 -2.434 19.767 60.872 1 47.15 ? C8A NDP 301 C 1 HETATM 15 N N7A NDP . . . G 2 -1.609 18.664 60.881 1 45.2 ? N7A NDP 301 C 1 HETATM 16 C C5A NDP . . . G 2 -2.404 17.611 61.014 1 39.19 ? C5A NDP 301 C 1 HETATM 17 C C6A NDP . . . G 2 -2.237 16.187 61.109 1 39.54 ? C6A NDP 301 C 1 HETATM 18 N N6A NDP . . . G 2 -1.017 15.633 61.036 1 44.17 ? N6A NDP 301 C 1 HETATM 19 N N1A NDP . . . G 2 -3.325 15.404 61.268 1 45.26 ? N1A NDP 301 C 1 HETATM 20 C C2A NDP . . . G 2 -4.584 15.899 61.333 1 40.13 ? C2A NDP 301 C 1 HETATM 21 N N3A NDP . . . G 2 -4.794 17.22 61.283 1 42.22 ? N3A NDP 301 C 1 HETATM 22 C C4A NDP . . . G 2 -3.773 18.095 61.125 1 39.88 ? C4A NDP 301 C 1 HETATM 23 O O3 NDP . . . G 2 -5.907 26.217 60.517 1 61.86 ? O3 NDP 301 C 1 HETATM 24 P P2B NDP . . . G 2 -5.258 21.204 64.906 1 55.63 ? P2B NDP 301 C 1 HETATM 25 O O1X NDP . . . G 2 -4.055 22.11 64.808 1 51.62 ? O1X NDP 301 C 1 HETATM 26 O O2X NDP . . . G 2 -5.014 19.922 65.671 1 56.28 ? O2X NDP 301 C 1 HETATM 27 O O3X NDP . . . G 2 -6.571 21.927 65.03 1 47.39 ? O3X NDP 301 C 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #