data_4WK6 # _model_server_result.job_id LUkG3Wc-JVNc3c7bRMdCrQ _model_server_result.datetime_utc '2024-12-14 05:00:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 4WK6 # _exptl.entry_id 4WK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WK6 _cell.length_a 79.904 _cell.length_b 110.337 _cell.length_c 117.482 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4WK6 _atom_sites.fract_transf_matrix[1][1] 0.012515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 301 308 NDP NDP . F 2 NDP B 1 301 309 NDP NDP . G 2 NDP C 1 301 308 NDP NDP . H 2 NDP D 1 301 308 NDP NDP . I 3 1PE D 1 302 1 1PE 1PE . J 4 HOH A 1 401 40 HOH HOH . J 4 HOH A 2 402 4 HOH HOH . J 4 HOH A 3 403 6 HOH HOH . J 4 HOH A 4 404 10 HOH HOH . J 4 HOH A 5 405 11 HOH HOH . J 4 HOH A 6 406 22 HOH HOH . J 4 HOH A 7 407 23 HOH HOH . J 4 HOH A 8 408 35 HOH HOH . J 4 HOH A 9 409 36 HOH HOH . J 4 HOH A 10 410 38 HOH HOH . J 4 HOH A 11 411 46 HOH HOH . J 4 HOH A 12 412 54 HOH HOH . J 4 HOH A 13 413 62 HOH HOH . J 4 HOH A 14 414 66 HOH HOH . J 4 HOH A 15 415 71 HOH HOH . J 4 HOH A 16 416 74 HOH HOH . J 4 HOH A 17 417 80 HOH HOH . J 4 HOH A 18 418 89 HOH HOH . J 4 HOH A 19 419 95 HOH HOH . J 4 HOH A 20 420 101 HOH HOH . J 4 HOH A 21 421 103 HOH HOH . J 4 HOH A 22 422 104 HOH HOH . J 4 HOH A 23 423 109 HOH HOH . J 4 HOH A 24 424 113 HOH HOH . J 4 HOH A 25 425 118 HOH HOH . J 4 HOH A 26 426 129 HOH HOH . K 4 HOH B 1 401 63 HOH HOH . K 4 HOH B 2 402 1 HOH HOH . K 4 HOH B 3 403 5 HOH HOH . K 4 HOH B 4 404 12 HOH HOH . K 4 HOH B 5 405 16 HOH HOH . K 4 HOH B 6 406 19 HOH HOH . K 4 HOH B 7 407 21 HOH HOH . K 4 HOH B 8 408 27 HOH HOH . K 4 HOH B 9 409 28 HOH HOH . K 4 HOH B 10 410 32 HOH HOH . K 4 HOH B 11 411 41 HOH HOH . K 4 HOH B 12 412 53 HOH HOH . K 4 HOH B 13 413 60 HOH HOH . K 4 HOH B 14 414 64 HOH HOH . K 4 HOH B 15 415 65 HOH HOH . K 4 HOH B 16 416 75 HOH HOH . K 4 HOH B 17 417 78 HOH HOH . K 4 HOH B 18 418 79 HOH HOH . K 4 HOH B 19 419 81 HOH HOH . K 4 HOH B 20 420 83 HOH HOH . K 4 HOH B 21 421 88 HOH HOH . K 4 HOH B 22 422 91 HOH HOH . K 4 HOH B 23 423 92 HOH HOH . K 4 HOH B 24 424 94 HOH HOH . K 4 HOH B 25 425 105 HOH HOH . K 4 HOH B 26 426 107 HOH HOH . K 4 HOH B 27 427 108 HOH HOH . K 4 HOH B 28 428 130 HOH HOH . L 4 HOH C 1 401 15 HOH HOH . L 4 HOH C 2 402 37 HOH HOH . L 4 HOH C 3 403 7 HOH HOH . L 4 HOH C 4 404 9 HOH HOH . L 4 HOH C 5 405 13 HOH HOH . L 4 HOH C 6 406 14 HOH HOH . L 4 HOH C 7 407 25 HOH HOH . L 4 HOH C 8 408 26 HOH HOH . L 4 HOH C 9 409 29 HOH HOH . L 4 HOH C 10 410 34 HOH HOH . L 4 HOH C 11 411 44 HOH HOH . L 4 HOH C 12 412 50 HOH HOH . L 4 HOH C 13 413 51 HOH HOH . L 4 HOH C 14 414 52 HOH HOH . L 4 HOH C 15 415 61 HOH HOH . L 4 HOH C 16 416 68 HOH HOH . L 4 HOH C 17 417 69 HOH HOH . L 4 HOH C 18 418 72 HOH HOH . L 4 HOH C 19 419 73 HOH HOH . L 4 HOH C 20 420 84 HOH HOH . L 4 HOH C 21 421 86 HOH HOH . L 4 HOH C 22 422 93 HOH HOH . L 4 HOH C 23 423 102 HOH HOH . L 4 HOH C 24 424 106 HOH HOH . L 4 HOH C 25 425 119 HOH HOH . L 4 HOH C 26 426 122 HOH HOH . L 4 HOH C 27 427 126 HOH HOH . L 4 HOH C 28 428 127 HOH HOH . L 4 HOH C 29 429 128 HOH HOH . M 4 HOH D 1 401 17 HOH HOH . M 4 HOH D 2 402 20 HOH HOH . M 4 HOH D 3 403 24 HOH HOH . M 4 HOH D 4 404 30 HOH HOH . M 4 HOH D 5 405 55 HOH HOH . M 4 HOH D 6 406 59 HOH HOH . M 4 HOH D 7 407 70 HOH HOH . M 4 HOH D 8 408 87 HOH HOH . M 4 HOH D 9 409 90 HOH HOH . M 4 HOH D 10 410 100 HOH HOH . M 4 HOH D 11 411 110 HOH HOH . M 4 HOH D 12 412 112 HOH HOH . M 4 HOH D 13 413 114 HOH HOH . M 4 HOH D 14 414 115 HOH HOH . M 4 HOH D 15 415 117 HOH HOH . M 4 HOH D 16 416 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . I 3 -8.645 29.912 38.611 0.8 65.49 ? OH2 1PE 302 D 1 HETATM 2 C C12 1PE . . . I 3 -9.811 29.495 37.851 0.8 67.1 ? C12 1PE 302 D 1 HETATM 3 C C22 1PE . . . I 3 -9.482 28.401 36.821 0.8 74.25 ? C22 1PE 302 D 1 HETATM 4 O OH3 1PE . . . I 3 -8.095 28.035 36.877 0.8 75.08 ? OH3 1PE 302 D 1 HETATM 5 C C13 1PE . . . I 3 -6.254 26.929 35.713 0.8 76.99 ? C13 1PE 302 D 1 HETATM 6 C C23 1PE . . . I 3 -7.757 26.918 36.04 0.8 75.57 ? C23 1PE 302 D 1 HETATM 7 O OH4 1PE . . . I 3 -5.573 25.794 36.27 0.8 81.69 ? OH4 1PE 302 D 1 HETATM 8 C C14 1PE . . . I 3 -5.451 23.919 34.743 0.8 88.45 ? C14 1PE 302 D 1 HETATM 9 C C24 1PE . . . I 3 -4.689 25.072 35.4 0.8 85.53 ? C24 1PE 302 D 1 HETATM 10 O OH5 1PE . . . I 3 -6.713 23.726 35.394 0.8 96.2 ? OH5 1PE 302 D 1 HETATM 11 C C15 1PE . . . I 3 -8.895 23.432 34.438 0.8 98.76 ? C15 1PE 302 D 1 HETATM 12 C C25 1PE . . . I 3 -7.553 22.775 34.738 0.8 98.17 ? C25 1PE 302 D 1 HETATM 13 O OH6 1PE . . . I 3 -9.131 23.376 33.03 0.8 96.93 ? OH6 1PE 302 D 1 HETATM 14 C C16 1PE . . . I 3 -9.914 25.441 32.104 0.8 92.1 ? C16 1PE 302 D 1 HETATM 15 C C26 1PE . . . I 3 -10.306 24.088 32.673 0.8 94.32 ? C26 1PE 302 D 1 HETATM 16 O OH7 1PE . . . I 3 -11.104 26.226 32.031 0.8 86.13 ? OH7 1PE 302 D 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #