data_4WK7 # _model_server_result.job_id uJ1ajOXl8yRNrufGTXLjrw _model_server_result.datetime_utc '2024-12-26 14:57:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4WK7 # _exptl.entry_id 4WK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WK7 _cell.length_a 40.506 _cell.length_b 67.923 _cell.length_c 74.581 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 293 1_555 A SG CYS 133 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 110 A CYS 322 1_555 A SG CYS 115 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 127 A CYS 339 1_555 A SG CYS 211 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 165 A CYS 377 1_555 A SG CYS 195 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OE1 GLU 9 A GLU 221 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A OE1 GLU 9 A GLU 221 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 A OE2 GLU 9 A GLU 221 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 A OD1 ASP 92 A ASP 304 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc5 A OD2 ASP 92 A ASP 304 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 A O ASP 92 A ASP 304 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc7 A OD1 ASP 92 A ASP 304 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc8 A OD1 ASP 99 A ASP 311 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc9 A OD2 ASP 99 A ASP 311 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 A OD1 ASP 108 A ASP 320 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 A O LEU 109 A LEU 321 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc12 A O CYS 115 A CYS 327 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 A O THR 117 A THR 329 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 A OE1 GLU 137 A GLU 349 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc15 A NE2 HIS 149 A HIS 361 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc16 A NE2 HIS 153 A HIS 365 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc17 A NE2 HIS 159 A HIS 371 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc18 A O CYS 211 A CYS 423 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc19 A OD1 ASP 214 A ASP 426 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc20 A OD2 ASP 214 A ASP 426 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc21 B ZN ZN . A ZN 501 1_555 F N1 3PQ . A 3PQ 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc22 C CA CA . A CA 502 1_555 G O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc23 D CA CA . A CA 503 1_555 G O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc24 D CA CA . A CA 503 1_555 G O HOH . A HOH 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc25 E CA CA . A CA 504 1_555 G O HOH . A HOH 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WK7 _atom_sites.fract_transf_matrix[1][1] 0.024688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 3 CA A 1 502 2 CA CA . D 3 CA A 1 503 3 CA CA . E 3 CA A 1 504 4 CA CA . F 4 3PQ A 1 505 1 3PQ SX1 . G 5 HOH A 1 601 145 HOH HOH . G 5 HOH A 2 602 20 HOH HOH . G 5 HOH A 3 603 122 HOH HOH . G 5 HOH A 4 604 103 HOH HOH . G 5 HOH A 5 605 57 HOH HOH . G 5 HOH A 6 606 180 HOH HOH . G 5 HOH A 7 607 50 HOH HOH . G 5 HOH A 8 608 41 HOH HOH . G 5 HOH A 9 609 218 HOH HOH . G 5 HOH A 10 610 81 HOH HOH . G 5 HOH A 11 611 146 HOH HOH . G 5 HOH A 12 612 170 HOH HOH . G 5 HOH A 13 613 176 HOH HOH . G 5 HOH A 14 614 117 HOH HOH . G 5 HOH A 15 615 8 HOH HOH . G 5 HOH A 16 616 90 HOH HOH . G 5 HOH A 17 617 212 HOH HOH . G 5 HOH A 18 618 82 HOH HOH . G 5 HOH A 19 619 65 HOH HOH . G 5 HOH A 20 620 61 HOH HOH . G 5 HOH A 21 621 22 HOH HOH . G 5 HOH A 22 622 128 HOH HOH . G 5 HOH A 23 623 197 HOH HOH . G 5 HOH A 24 624 105 HOH HOH . G 5 HOH A 25 625 59 HOH HOH . G 5 HOH A 26 626 14 HOH HOH . G 5 HOH A 27 627 10 HOH HOH . G 5 HOH A 28 628 37 HOH HOH . G 5 HOH A 29 629 116 HOH HOH . G 5 HOH A 30 630 99 HOH HOH . G 5 HOH A 31 631 27 HOH HOH . G 5 HOH A 32 632 189 HOH HOH . G 5 HOH A 33 633 49 HOH HOH . G 5 HOH A 34 634 221 HOH HOH . G 5 HOH A 35 635 169 HOH HOH . G 5 HOH A 36 636 131 HOH HOH . G 5 HOH A 37 637 205 HOH HOH . G 5 HOH A 38 638 147 HOH HOH . G 5 HOH A 39 639 102 HOH HOH . G 5 HOH A 40 640 77 HOH HOH . G 5 HOH A 41 641 174 HOH HOH . G 5 HOH A 42 642 78 HOH HOH . G 5 HOH A 43 643 52 HOH HOH . G 5 HOH A 44 644 129 HOH HOH . G 5 HOH A 45 645 109 HOH HOH . G 5 HOH A 46 646 171 HOH HOH . G 5 HOH A 47 647 60 HOH HOH . G 5 HOH A 48 648 29 HOH HOH . G 5 HOH A 49 649 125 HOH HOH . G 5 HOH A 50 650 80 HOH HOH . G 5 HOH A 51 651 144 HOH HOH . G 5 HOH A 52 652 157 HOH HOH . G 5 HOH A 53 653 127 HOH HOH . G 5 HOH A 54 654 184 HOH HOH . G 5 HOH A 55 655 67 HOH HOH . G 5 HOH A 56 656 153 HOH HOH . G 5 HOH A 57 657 132 HOH HOH . G 5 HOH A 58 658 213 HOH HOH . G 5 HOH A 59 659 85 HOH HOH . G 5 HOH A 60 660 98 HOH HOH . G 5 HOH A 61 661 108 HOH HOH . G 5 HOH A 62 662 163 HOH HOH . G 5 HOH A 63 663 31 HOH HOH . G 5 HOH A 64 664 119 HOH HOH . G 5 HOH A 65 665 123 HOH HOH . G 5 HOH A 66 666 183 HOH HOH . G 5 HOH A 67 667 182 HOH HOH . G 5 HOH A 68 668 110 HOH HOH . G 5 HOH A 69 669 149 HOH HOH . G 5 HOH A 70 670 214 HOH HOH . G 5 HOH A 71 671 143 HOH HOH . G 5 HOH A 72 672 164 HOH HOH . G 5 HOH A 73 673 179 HOH HOH . G 5 HOH A 74 674 111 HOH HOH . G 5 HOH A 75 675 124 HOH HOH . G 5 HOH A 76 676 106 HOH HOH . G 5 HOH A 77 677 177 HOH HOH . G 5 HOH A 78 678 113 HOH HOH . G 5 HOH A 79 679 222 HOH HOH . G 5 HOH A 80 680 1 HOH HOH . G 5 HOH A 81 681 2 HOH HOH . G 5 HOH A 82 682 3 HOH HOH . G 5 HOH A 83 683 4 HOH HOH . G 5 HOH A 84 684 5 HOH HOH . G 5 HOH A 85 685 6 HOH HOH . G 5 HOH A 86 686 7 HOH HOH . G 5 HOH A 87 687 9 HOH HOH . G 5 HOH A 88 688 11 HOH HOH . G 5 HOH A 89 689 12 HOH HOH . G 5 HOH A 90 690 13 HOH HOH . G 5 HOH A 91 691 15 HOH HOH . G 5 HOH A 92 692 16 HOH HOH . G 5 HOH A 93 693 17 HOH HOH . G 5 HOH A 94 694 18 HOH HOH . G 5 HOH A 95 695 19 HOH HOH . G 5 HOH A 96 696 21 HOH HOH . G 5 HOH A 97 697 23 HOH HOH . G 5 HOH A 98 698 24 HOH HOH . G 5 HOH A 99 699 25 HOH HOH . G 5 HOH A 100 700 26 HOH HOH . G 5 HOH A 101 701 28 HOH HOH . G 5 HOH A 102 702 30 HOH HOH . G 5 HOH A 103 703 32 HOH HOH . G 5 HOH A 104 704 33 HOH HOH . G 5 HOH A 105 705 34 HOH HOH . G 5 HOH A 106 706 35 HOH HOH . G 5 HOH A 107 707 36 HOH HOH . G 5 HOH A 108 708 38 HOH HOH . G 5 HOH A 109 709 39 HOH HOH . G 5 HOH A 110 710 40 HOH HOH . G 5 HOH A 111 711 42 HOH HOH . G 5 HOH A 112 712 43 HOH HOH . G 5 HOH A 113 713 44 HOH HOH . G 5 HOH A 114 714 45 HOH HOH . G 5 HOH A 115 715 46 HOH HOH . G 5 HOH A 116 716 47 HOH HOH . G 5 HOH A 117 717 48 HOH HOH . G 5 HOH A 118 718 51 HOH HOH . G 5 HOH A 119 719 53 HOH HOH . G 5 HOH A 120 720 54 HOH HOH . G 5 HOH A 121 721 55 HOH HOH . G 5 HOH A 122 722 56 HOH HOH . G 5 HOH A 123 723 58 HOH HOH . G 5 HOH A 124 724 62 HOH HOH . G 5 HOH A 125 725 63 HOH HOH . G 5 HOH A 126 726 64 HOH HOH . G 5 HOH A 127 727 66 HOH HOH . G 5 HOH A 128 728 68 HOH HOH . G 5 HOH A 129 729 69 HOH HOH . G 5 HOH A 130 730 70 HOH HOH . G 5 HOH A 131 731 71 HOH HOH . G 5 HOH A 132 732 72 HOH HOH . G 5 HOH A 133 733 73 HOH HOH . G 5 HOH A 134 734 74 HOH HOH . G 5 HOH A 135 735 75 HOH HOH . G 5 HOH A 136 736 76 HOH HOH . G 5 HOH A 137 737 79 HOH HOH . G 5 HOH A 138 738 83 HOH HOH . G 5 HOH A 139 739 84 HOH HOH . G 5 HOH A 140 740 86 HOH HOH . G 5 HOH A 141 741 87 HOH HOH . G 5 HOH A 142 742 88 HOH HOH . G 5 HOH A 143 743 89 HOH HOH . G 5 HOH A 144 744 91 HOH HOH . G 5 HOH A 145 745 92 HOH HOH . G 5 HOH A 146 746 93 HOH HOH . G 5 HOH A 147 747 94 HOH HOH . G 5 HOH A 148 748 95 HOH HOH . G 5 HOH A 149 749 96 HOH HOH . G 5 HOH A 150 750 97 HOH HOH . G 5 HOH A 151 751 100 HOH HOH . G 5 HOH A 152 752 101 HOH HOH . G 5 HOH A 153 753 104 HOH HOH . G 5 HOH A 154 754 107 HOH HOH . G 5 HOH A 155 755 112 HOH HOH . G 5 HOH A 156 756 114 HOH HOH . G 5 HOH A 157 757 115 HOH HOH . G 5 HOH A 158 758 118 HOH HOH . G 5 HOH A 159 759 120 HOH HOH . G 5 HOH A 160 760 121 HOH HOH . G 5 HOH A 161 761 126 HOH HOH . G 5 HOH A 162 762 130 HOH HOH . G 5 HOH A 163 763 133 HOH HOH . G 5 HOH A 164 764 134 HOH HOH . G 5 HOH A 165 765 135 HOH HOH . G 5 HOH A 166 766 136 HOH HOH . G 5 HOH A 167 767 137 HOH HOH . G 5 HOH A 168 768 138 HOH HOH . G 5 HOH A 169 769 139 HOH HOH . G 5 HOH A 170 770 140 HOH HOH . G 5 HOH A 171 771 141 HOH HOH . G 5 HOH A 172 772 142 HOH HOH . G 5 HOH A 173 773 148 HOH HOH . G 5 HOH A 174 774 150 HOH HOH . G 5 HOH A 175 775 151 HOH HOH . G 5 HOH A 176 776 152 HOH HOH . G 5 HOH A 177 777 154 HOH HOH . G 5 HOH A 178 778 155 HOH HOH . G 5 HOH A 179 779 156 HOH HOH . G 5 HOH A 180 780 158 HOH HOH . G 5 HOH A 181 781 159 HOH HOH . G 5 HOH A 182 782 160 HOH HOH . G 5 HOH A 183 783 161 HOH HOH . G 5 HOH A 184 784 162 HOH HOH . G 5 HOH A 185 785 165 HOH HOH . G 5 HOH A 186 786 166 HOH HOH . G 5 HOH A 187 787 167 HOH HOH . G 5 HOH A 188 788 168 HOH HOH . G 5 HOH A 189 789 172 HOH HOH . G 5 HOH A 190 790 173 HOH HOH . G 5 HOH A 191 791 175 HOH HOH . G 5 HOH A 192 792 178 HOH HOH . G 5 HOH A 193 793 181 HOH HOH . G 5 HOH A 194 794 185 HOH HOH . G 5 HOH A 195 795 186 HOH HOH . G 5 HOH A 196 796 187 HOH HOH . G 5 HOH A 197 797 188 HOH HOH . G 5 HOH A 198 798 190 HOH HOH . G 5 HOH A 199 799 191 HOH HOH . G 5 HOH A 200 800 192 HOH HOH . G 5 HOH A 201 801 193 HOH HOH . G 5 HOH A 202 802 194 HOH HOH . G 5 HOH A 203 803 195 HOH HOH . G 5 HOH A 204 804 198 HOH HOH . G 5 HOH A 205 805 199 HOH HOH . G 5 HOH A 206 806 200 HOH HOH . G 5 HOH A 207 807 201 HOH HOH . G 5 HOH A 208 808 202 HOH HOH . G 5 HOH A 209 809 203 HOH HOH . G 5 HOH A 210 810 204 HOH HOH . G 5 HOH A 211 811 206 HOH HOH . G 5 HOH A 212 812 207 HOH HOH . G 5 HOH A 213 813 208 HOH HOH . G 5 HOH A 214 814 211 HOH HOH . G 5 HOH A 215 815 215 HOH HOH . G 5 HOH A 216 816 216 HOH HOH . G 5 HOH A 217 817 217 HOH HOH . G 5 HOH A 218 818 219 HOH HOH . G 5 HOH A 219 819 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.315 _atom_site.Cartn_y 11.107 _atom_site.Cartn_z 39.11 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #