data_4WKE # _model_server_result.job_id JgCZu7MztEdyyBhKWUXKhg _model_server_result.datetime_utc '2024-11-05 21:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4WKE # _exptl.entry_id 4WKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WKE _cell.length_a 40.275 _cell.length_b 68.035 _cell.length_c 74.765 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 293 1_555 A SG CYS 133 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 A SG CYS 110 A CYS 322 1_555 A SG CYS 115 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 127 A CYS 339 1_555 A SG CYS 211 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 165 A CYS 377 1_555 A SG CYS 195 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A OE1 GLU 9 A GLU 221 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc2 A OE1 GLU 9 A GLU 221 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 A OE2 GLU 9 A GLU 221 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc4 A OD1 ASP 92 A ASP 304 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 A OD2 ASP 92 A ASP 304 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc6 A O ASP 92 A ASP 304 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 A OD1 ASP 92 A ASP 304 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc8 A OD1 ASP 99 A ASP 311 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 A OD2 ASP 99 A ASP 311 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc10 A OD1 ASP 108 A ASP 320 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc11 A O LEU 109 A LEU 321 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc12 A O CYS 115 A CYS 327 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc13 A O THR 117 A THR 329 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc14 A OE1 GLU 137 A GLU 349 1_555 E CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc15 A NE2 HIS 149 A HIS 361 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 A NE2 HIS 153 A HIS 365 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc17 A NE2 HIS 159 A HIS 371 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc18 A O CYS 211 A CYS 423 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc19 A OD1 ASP 214 A ASP 426 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc20 A OD2 ASP 214 A ASP 426 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc21 B ZN ZN . A ZN 501 1_555 I N18 3PU . A 3PU 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc22 C CA CA . A CA 502 1_555 J O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc23 D CA CA . A CA 503 1_555 J O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc24 D CA CA . A CA 503 1_555 J O HOH . A HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc25 E CA CA . A CA 504 1_555 J O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 123 n n C1 C2 EDO sing 124 n n C1 H11 EDO sing 125 n n C1 H12 EDO sing 126 n n O1 HO1 EDO sing 127 n n C2 O2 EDO sing 128 n n C2 H21 EDO sing 129 n n C2 H22 EDO sing 130 n n O2 HO2 EDO sing 131 n n # _atom_sites.entry_id 4WKE _atom_sites.fract_transf_matrix[1][1] 0.024829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 3 CA A 1 502 2 CA CA . D 3 CA A 1 503 3 CA CA . E 3 CA A 1 504 4 CA CA . F 4 EDO A 1 505 5 EDO EDO . G 4 EDO A 1 506 6 EDO EDO . H 4 EDO A 1 507 7 EDO EDO . I 5 3PU A 1 508 1 3PU SX1 . J 6 HOH A 1 601 140 HOH HOH . J 6 HOH A 2 602 84 HOH HOH . J 6 HOH A 3 603 102 HOH HOH . J 6 HOH A 4 604 11 HOH HOH . J 6 HOH A 5 605 109 HOH HOH . J 6 HOH A 6 606 128 HOH HOH . J 6 HOH A 7 607 152 HOH HOH . J 6 HOH A 8 608 46 HOH HOH . J 6 HOH A 9 609 95 HOH HOH . J 6 HOH A 10 610 153 HOH HOH . J 6 HOH A 11 611 120 HOH HOH . J 6 HOH A 12 612 158 HOH HOH . J 6 HOH A 13 613 77 HOH HOH . J 6 HOH A 14 614 32 HOH HOH . J 6 HOH A 15 615 52 HOH HOH . J 6 HOH A 16 616 48 HOH HOH . J 6 HOH A 17 617 126 HOH HOH . J 6 HOH A 18 618 73 HOH HOH . J 6 HOH A 19 619 83 HOH HOH . J 6 HOH A 20 620 157 HOH HOH . J 6 HOH A 21 621 134 HOH HOH . J 6 HOH A 22 622 47 HOH HOH . J 6 HOH A 23 623 56 HOH HOH . J 6 HOH A 24 624 132 HOH HOH . J 6 HOH A 25 625 38 HOH HOH . J 6 HOH A 26 626 130 HOH HOH . J 6 HOH A 27 627 113 HOH HOH . J 6 HOH A 28 628 99 HOH HOH . J 6 HOH A 29 629 106 HOH HOH . J 6 HOH A 30 630 63 HOH HOH . J 6 HOH A 31 631 23 HOH HOH . J 6 HOH A 32 632 88 HOH HOH . J 6 HOH A 33 633 72 HOH HOH . J 6 HOH A 34 634 133 HOH HOH . J 6 HOH A 35 635 57 HOH HOH . J 6 HOH A 36 636 10 HOH HOH . J 6 HOH A 37 637 25 HOH HOH . J 6 HOH A 38 638 15 HOH HOH . J 6 HOH A 39 639 27 HOH HOH . J 6 HOH A 40 640 92 HOH HOH . J 6 HOH A 41 641 29 HOH HOH . J 6 HOH A 42 642 125 HOH HOH . J 6 HOH A 43 643 43 HOH HOH . J 6 HOH A 44 644 45 HOH HOH . J 6 HOH A 45 645 115 HOH HOH . J 6 HOH A 46 646 37 HOH HOH . J 6 HOH A 47 647 90 HOH HOH . J 6 HOH A 48 648 64 HOH HOH . J 6 HOH A 49 649 146 HOH HOH . J 6 HOH A 50 650 112 HOH HOH . J 6 HOH A 51 651 160 HOH HOH . J 6 HOH A 52 652 87 HOH HOH . J 6 HOH A 53 653 53 HOH HOH . J 6 HOH A 54 654 35 HOH HOH . J 6 HOH A 55 655 121 HOH HOH . J 6 HOH A 56 656 89 HOH HOH . J 6 HOH A 57 657 118 HOH HOH . J 6 HOH A 58 658 136 HOH HOH . J 6 HOH A 59 659 75 HOH HOH . J 6 HOH A 60 660 68 HOH HOH . J 6 HOH A 61 661 154 HOH HOH . J 6 HOH A 62 662 137 HOH HOH . J 6 HOH A 63 663 107 HOH HOH . J 6 HOH A 64 664 127 HOH HOH . J 6 HOH A 65 665 76 HOH HOH . J 6 HOH A 66 666 159 HOH HOH . J 6 HOH A 67 667 65 HOH HOH . J 6 HOH A 68 668 142 HOH HOH . J 6 HOH A 69 669 114 HOH HOH . J 6 HOH A 70 670 1 HOH HOH . J 6 HOH A 71 671 2 HOH HOH . J 6 HOH A 72 672 3 HOH HOH . J 6 HOH A 73 673 4 HOH HOH . J 6 HOH A 74 674 5 HOH HOH . J 6 HOH A 75 675 6 HOH HOH . J 6 HOH A 76 676 7 HOH HOH . J 6 HOH A 77 677 8 HOH HOH . J 6 HOH A 78 678 9 HOH HOH . J 6 HOH A 79 679 12 HOH HOH . J 6 HOH A 80 680 13 HOH HOH . J 6 HOH A 81 681 14 HOH HOH . J 6 HOH A 82 682 16 HOH HOH . J 6 HOH A 83 683 17 HOH HOH . J 6 HOH A 84 684 18 HOH HOH . J 6 HOH A 85 685 19 HOH HOH . J 6 HOH A 86 686 20 HOH HOH . J 6 HOH A 87 687 21 HOH HOH . J 6 HOH A 88 688 22 HOH HOH . J 6 HOH A 89 689 24 HOH HOH . J 6 HOH A 90 690 26 HOH HOH . J 6 HOH A 91 691 28 HOH HOH . J 6 HOH A 92 692 30 HOH HOH . J 6 HOH A 93 693 31 HOH HOH . J 6 HOH A 94 694 33 HOH HOH . J 6 HOH A 95 695 34 HOH HOH . J 6 HOH A 96 696 36 HOH HOH . J 6 HOH A 97 697 39 HOH HOH . J 6 HOH A 98 698 40 HOH HOH . J 6 HOH A 99 699 41 HOH HOH . J 6 HOH A 100 700 42 HOH HOH . J 6 HOH A 101 701 44 HOH HOH . J 6 HOH A 102 702 49 HOH HOH . J 6 HOH A 103 703 50 HOH HOH . J 6 HOH A 104 704 51 HOH HOH . J 6 HOH A 105 705 54 HOH HOH . J 6 HOH A 106 706 55 HOH HOH . J 6 HOH A 107 707 58 HOH HOH . J 6 HOH A 108 708 59 HOH HOH . J 6 HOH A 109 709 60 HOH HOH . J 6 HOH A 110 710 61 HOH HOH . J 6 HOH A 111 711 62 HOH HOH . J 6 HOH A 112 712 66 HOH HOH . J 6 HOH A 113 713 67 HOH HOH . J 6 HOH A 114 714 69 HOH HOH . J 6 HOH A 115 715 70 HOH HOH . J 6 HOH A 116 716 71 HOH HOH . J 6 HOH A 117 717 74 HOH HOH . J 6 HOH A 118 718 78 HOH HOH . J 6 HOH A 119 719 79 HOH HOH . J 6 HOH A 120 720 80 HOH HOH . J 6 HOH A 121 721 81 HOH HOH . J 6 HOH A 122 722 82 HOH HOH . J 6 HOH A 123 723 85 HOH HOH . J 6 HOH A 124 724 86 HOH HOH . J 6 HOH A 125 725 91 HOH HOH . J 6 HOH A 126 726 93 HOH HOH . J 6 HOH A 127 727 94 HOH HOH . J 6 HOH A 128 728 96 HOH HOH . J 6 HOH A 129 729 97 HOH HOH . J 6 HOH A 130 730 98 HOH HOH . J 6 HOH A 131 731 100 HOH HOH . J 6 HOH A 132 732 101 HOH HOH . J 6 HOH A 133 733 103 HOH HOH . J 6 HOH A 134 734 104 HOH HOH . J 6 HOH A 135 735 105 HOH HOH . J 6 HOH A 136 736 108 HOH HOH . J 6 HOH A 137 737 110 HOH HOH . J 6 HOH A 138 738 111 HOH HOH . J 6 HOH A 139 739 116 HOH HOH . J 6 HOH A 140 740 117 HOH HOH . J 6 HOH A 141 741 119 HOH HOH . J 6 HOH A 142 742 122 HOH HOH . J 6 HOH A 143 743 123 HOH HOH . J 6 HOH A 144 744 124 HOH HOH . J 6 HOH A 145 745 129 HOH HOH . J 6 HOH A 146 746 131 HOH HOH . J 6 HOH A 147 747 135 HOH HOH . J 6 HOH A 148 748 138 HOH HOH . J 6 HOH A 149 749 139 HOH HOH . J 6 HOH A 150 750 141 HOH HOH . J 6 HOH A 151 751 143 HOH HOH . J 6 HOH A 152 752 144 HOH HOH . J 6 HOH A 153 753 145 HOH HOH . J 6 HOH A 154 754 147 HOH HOH . J 6 HOH A 155 755 148 HOH HOH . J 6 HOH A 156 756 149 HOH HOH . J 6 HOH A 157 757 150 HOH HOH . J 6 HOH A 158 758 151 HOH HOH . J 6 HOH A 159 759 155 HOH HOH . J 6 HOH A 160 760 156 HOH HOH . J 6 HOH A 161 761 161 HOH HOH . J 6 HOH A 162 762 162 HOH HOH . J 6 HOH A 163 763 163 HOH HOH . J 6 HOH A 164 764 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -0.032 -4.694 17.086 1 35.07 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 4 -1.217 -4.934 16.323 1 36.15 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 4 0.583 -3.366 16.661 1 34.84 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 4 1.061 -3.419 15.309 1 32.59 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #