data_4WKG # _model_server_result.job_id kY9YGkqqqUNwG_NUAYvLCQ _model_server_result.datetime_utc '2025-06-17 01:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 4WKG # _exptl.entry_id 4WKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.92 _cell.angle_beta 82.96 _cell.angle_gamma 83.8 _cell.entry_id 4WKG _cell.length_a 106.72 _cell.length_b 112.82 _cell.length_c 113.61 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 89 n n S1 HS1 DTT sing 90 n n C1 C2 DTT sing 91 n n C1 H11 DTT sing 92 n n C1 H12 DTT sing 93 n n C2 O2 DTT sing 94 n n C2 C3 DTT sing 95 n n C2 H2 DTT sing 96 n n O2 HO2 DTT sing 97 n n C3 O3 DTT sing 98 n n C3 C4 DTT sing 99 n n C3 H3 DTT sing 100 n n O3 HO3 DTT sing 101 n n C4 S4 DTT sing 102 n n C4 H41 DTT sing 103 n n C4 H42 DTT sing 104 n n S4 HS2 DTT sing 105 n n # _atom_sites.entry_id 4WKG _atom_sites.fract_transf_matrix[1][1] 0.00937 _atom_sites.fract_transf_matrix[1][2] -0.001018 _atom_sites.fract_transf_matrix[1][3] -0.001034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008916 _atom_sites.fract_transf_matrix[2][3] -0.00116 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DTT A 1 701 1 DTT DTT . H 3 ACT A 1 702 1 ACT ACT . I 2 DTT D 1 701 1 DTT DTT . J 3 ACT F 1 701 2 ACT ACT . K 4 HOH A 1 801 8 HOH HOH . L 4 HOH B 1 701 1 HOH HOH . L 4 HOH B 2 702 2 HOH HOH . M 4 HOH C 1 701 7 HOH HOH . M 4 HOH C 2 702 10 HOH HOH . N 4 HOH D 1 801 6 HOH HOH . O 4 HOH E 1 701 4 HOH HOH . O 4 HOH E 2 702 5 HOH HOH . P 4 HOH F 1 801 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . A . G 2 41.161 38.458 56.59 0.5 32.52 ? S1 DTT 701 A 1 HETATM 2 S S1 DTT . B . G 2 37.61 40.858 56.212 0.5 55.06 ? S1 DTT 701 A 1 HETATM 3 C C1 DTT . A . G 2 40.325 39.329 55.241 0.5 32.52 ? C1 DTT 701 A 1 HETATM 4 C C1 DTT . B . G 2 38.362 39.497 55.279 0.5 55.06 ? C1 DTT 701 A 1 HETATM 5 C C2 DTT . A . G 2 38.907 38.84 54.92 0.5 32.52 ? C2 DTT 701 A 1 HETATM 6 C C2 DTT . B . G 2 38.768 38.303 56.141 0.5 55.06 ? C2 DTT 701 A 1 HETATM 7 O O2 DTT . A . G 2 37.969 39.744 55.476 0.5 32.52 ? O2 DTT 701 A 1 HETATM 8 O O2 DTT . B . G 2 40.133 38.423 56.48 0.5 55.06 ? O2 DTT 701 A 1 HETATM 9 C C3 DTT . A . G 2 38.621 37.405 55.384 0.5 32.52 ? C3 DTT 701 A 1 HETATM 10 C C3 DTT . B . G 2 38.551 36.961 55.432 0.5 55.06 ? C3 DTT 701 A 1 HETATM 11 O O3 DTT . A . G 2 38.598 37.376 56.787 0.5 32.52 ? O3 DTT 701 A 1 HETATM 12 O O3 DTT . B . G 2 39.045 35.923 56.25 0.5 55.06 ? O3 DTT 701 A 1 HETATM 13 C C4 DTT . A . G 2 37.272 36.89 54.867 0.5 32.52 ? C4 DTT 701 A 1 HETATM 14 C C4 DTT . B . G 2 37.079 36.696 55.108 0.5 55.06 ? C4 DTT 701 A 1 HETATM 15 S S4 DTT . A . G 2 36.894 35.142 55.175 0.5 32.52 ? S4 DTT 701 A 1 HETATM 16 S S4 DTT . B . G 2 36.651 34.938 55.108 0.5 55.06 ? S4 DTT 701 A 1 HETATM 17 H HS1 DTT . A . G 2 41.236 39.282 57.077 0.5 55.25 ? HS1 DTT 701 A 1 HETATM 18 H HS1 DTT . B . G 2 38.311 41.445 55.919 0.5 55.25 ? HS1 DTT 701 A 1 HETATM 19 H H11 DTT . A . G 2 40.277 40.389 55.491 0.5 55.25 ? H11 DTT 701 A 1 HETATM 20 H H11 DTT . B . G 2 39.244 39.871 54.759 0.5 55.25 ? H11 DTT 701 A 1 HETATM 21 H H12 DTT . A . G 2 40.934 39.241 54.341 0.5 55.25 ? H12 DTT 701 A 1 HETATM 22 H H12 DTT . B . G 2 37.657 39.159 54.52 0.5 55.25 ? H12 DTT 701 A 1 HETATM 23 H H2 DTT . A . G 2 38.798 38.856 53.835 0.5 55.25 ? H2 DTT 701 A 1 HETATM 24 H H2 DTT . B . G 2 38.165 38.314 57.049 0.5 55.25 ? H2 DTT 701 A 1 HETATM 25 H HO2 DTT . A . G 2 37.336 39.253 56.041 0.5 55.25 ? HO2 DTT 701 A 1 HETATM 26 H HO2 DTT . B . G 2 40.615 37.623 56.182 0.5 55.25 ? HO2 DTT 701 A 1 HETATM 27 H H3 DTT . A . G 2 39.411 36.753 55.013 0.5 55.25 ? H3 DTT 701 A 1 HETATM 28 H H3 DTT . B . G 2 39.107 36.978 54.495 0.5 55.25 ? H3 DTT 701 A 1 HETATM 29 H HO3 DTT . A . G 2 37.731 37.036 57.093 0.5 55.25 ? HO3 DTT 701 A 1 HETATM 30 H HO3 DTT . B . G 2 38.331 35.273 56.42 0.5 55.25 ? HO3 DTT 701 A 1 HETATM 31 H H41 DTT . A . G 2 36.482 37.494 55.315 0.5 55.25 ? H41 DTT 701 A 1 HETATM 32 H H41 DTT . B . G 2 36.457 37.212 55.839 0.5 55.25 ? H41 DTT 701 A 1 HETATM 33 H H42 DTT . A . G 2 37.23 37.064 53.792 0.5 55.25 ? H42 DTT 701 A 1 HETATM 34 H H42 DTT . B . G 2 36.85 37.117 54.129 0.5 55.25 ? H42 DTT 701 A 1 HETATM 35 H HS2 DTT . A . G 2 36.204 35.173 54.507 0.5 55.25 ? HS2 DTT 701 A 1 HETATM 36 H HS2 DTT . B . G 2 37.303 34.779 54.42 0.5 55.25 ? HS2 DTT 701 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 159 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 38 _model_server_stats.element_count 36 #