data_4WKQ # _model_server_result.job_id ut5o4k1Om-TuB06OMQ5VZg _model_server_result.datetime_utc '2024-11-16 15:35:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wkq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 4WKQ # _exptl.entry_id 4WKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WKQ _cell.length_a 143.714 _cell.length_b 143.714 _cell.length_c 143.714 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 104 A GLY 796 1_555 A N CSX 105 A CSX 797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CSX 105 A CSX 797 1_555 A N LEU 106 A LEU 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? metalc ? metalc1 A OE1 GLN 284 A GLN 976 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 C NA NA . A NA 1102 1_555 E O HOH . A HOH 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 C NA NA . A NA 1102 1_555 E O HOH . A HOH 1226 4_585 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 C NA NA . A NA 1102 1_555 E O HOH . A HOH 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 C NA NA . A NA 1102 1_555 E O HOH . A HOH 1266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WKQ _atom_sites.fract_transf_matrix[1][1] 0.006958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRE A 1 1101 1 IRE IRE . C 3 NA A 1 1102 1 NA NA . D 4 MES A 1 1103 1 MES MES . E 5 HOH A 1 1201 82 HOH HOH . E 5 HOH A 2 1202 46 HOH HOH . E 5 HOH A 3 1203 22 HOH HOH . E 5 HOH A 4 1204 34 HOH HOH . E 5 HOH A 5 1205 1 HOH HOH . E 5 HOH A 6 1206 73 HOH HOH . E 5 HOH A 7 1207 96 HOH HOH . E 5 HOH A 8 1208 37 HOH HOH . E 5 HOH A 9 1209 59 HOH HOH . E 5 HOH A 10 1210 43 HOH HOH . E 5 HOH A 11 1211 77 HOH HOH . E 5 HOH A 12 1212 24 HOH HOH . E 5 HOH A 13 1213 94 HOH HOH . E 5 HOH A 14 1214 12 HOH HOH . E 5 HOH A 15 1215 104 HOH HOH . E 5 HOH A 16 1216 83 HOH HOH . E 5 HOH A 17 1217 102 HOH HOH . E 5 HOH A 18 1218 95 HOH HOH . E 5 HOH A 19 1219 115 HOH HOH . E 5 HOH A 20 1220 88 HOH HOH . E 5 HOH A 21 1221 56 HOH HOH . E 5 HOH A 22 1222 107 HOH HOH . E 5 HOH A 23 1223 2 HOH HOH . E 5 HOH A 24 1224 25 HOH HOH . E 5 HOH A 25 1225 4 HOH HOH . E 5 HOH A 26 1226 11 HOH HOH . E 5 HOH A 27 1227 17 HOH HOH . E 5 HOH A 28 1228 44 HOH HOH . E 5 HOH A 29 1229 67 HOH HOH . E 5 HOH A 30 1230 50 HOH HOH . E 5 HOH A 31 1231 101 HOH HOH . E 5 HOH A 32 1232 85 HOH HOH . E 5 HOH A 33 1233 26 HOH HOH . E 5 HOH A 34 1234 27 HOH HOH . E 5 HOH A 35 1235 103 HOH HOH . E 5 HOH A 36 1236 87 HOH HOH . E 5 HOH A 37 1237 110 HOH HOH . E 5 HOH A 38 1238 114 HOH HOH . E 5 HOH A 39 1239 52 HOH HOH . E 5 HOH A 40 1240 66 HOH HOH . E 5 HOH A 41 1241 65 HOH HOH . E 5 HOH A 42 1242 111 HOH HOH . E 5 HOH A 43 1243 72 HOH HOH . E 5 HOH A 44 1244 58 HOH HOH . E 5 HOH A 45 1245 68 HOH HOH . E 5 HOH A 46 1246 3 HOH HOH . E 5 HOH A 47 1247 5 HOH HOH . E 5 HOH A 48 1248 6 HOH HOH . E 5 HOH A 49 1249 7 HOH HOH . E 5 HOH A 50 1250 8 HOH HOH . E 5 HOH A 51 1251 9 HOH HOH . E 5 HOH A 52 1252 10 HOH HOH . E 5 HOH A 53 1253 13 HOH HOH . E 5 HOH A 54 1254 14 HOH HOH . E 5 HOH A 55 1255 15 HOH HOH . E 5 HOH A 56 1256 16 HOH HOH . E 5 HOH A 57 1257 18 HOH HOH . E 5 HOH A 58 1258 19 HOH HOH . E 5 HOH A 59 1259 20 HOH HOH . E 5 HOH A 60 1260 21 HOH HOH . E 5 HOH A 61 1261 23 HOH HOH . E 5 HOH A 62 1262 28 HOH HOH . E 5 HOH A 63 1263 29 HOH HOH . E 5 HOH A 64 1264 30 HOH HOH . E 5 HOH A 65 1265 31 HOH HOH . E 5 HOH A 66 1266 32 HOH HOH . E 5 HOH A 67 1267 33 HOH HOH . E 5 HOH A 68 1268 35 HOH HOH . E 5 HOH A 69 1269 36 HOH HOH . E 5 HOH A 70 1270 38 HOH HOH . E 5 HOH A 71 1271 39 HOH HOH . E 5 HOH A 72 1272 40 HOH HOH . E 5 HOH A 73 1273 41 HOH HOH . E 5 HOH A 74 1274 42 HOH HOH . E 5 HOH A 75 1275 45 HOH HOH . E 5 HOH A 76 1276 47 HOH HOH . E 5 HOH A 77 1277 48 HOH HOH . E 5 HOH A 78 1278 49 HOH HOH . E 5 HOH A 79 1279 51 HOH HOH . E 5 HOH A 80 1280 53 HOH HOH . E 5 HOH A 81 1281 54 HOH HOH . E 5 HOH A 82 1282 55 HOH HOH . E 5 HOH A 83 1283 57 HOH HOH . E 5 HOH A 84 1284 60 HOH HOH . E 5 HOH A 85 1285 61 HOH HOH . E 5 HOH A 86 1286 62 HOH HOH . E 5 HOH A 87 1287 63 HOH HOH . E 5 HOH A 88 1288 64 HOH HOH . E 5 HOH A 89 1289 69 HOH HOH . E 5 HOH A 90 1290 70 HOH HOH . E 5 HOH A 91 1291 71 HOH HOH . E 5 HOH A 92 1292 74 HOH HOH . E 5 HOH A 93 1293 75 HOH HOH . E 5 HOH A 94 1294 76 HOH HOH . E 5 HOH A 95 1295 78 HOH HOH . E 5 HOH A 96 1296 79 HOH HOH . E 5 HOH A 97 1297 80 HOH HOH . E 5 HOH A 98 1298 81 HOH HOH . E 5 HOH A 99 1299 84 HOH HOH . E 5 HOH A 100 1300 86 HOH HOH . E 5 HOH A 101 1301 89 HOH HOH . E 5 HOH A 102 1302 90 HOH HOH . E 5 HOH A 103 1303 91 HOH HOH . E 5 HOH A 104 1304 92 HOH HOH . E 5 HOH A 105 1305 93 HOH HOH . E 5 HOH A 106 1306 97 HOH HOH . E 5 HOH A 107 1307 98 HOH HOH . E 5 HOH A 108 1308 99 HOH HOH . E 5 HOH A 109 1309 100 HOH HOH . E 5 HOH A 110 1310 105 HOH HOH . E 5 HOH A 111 1311 106 HOH HOH . E 5 HOH A 112 1312 108 HOH HOH . E 5 HOH A 113 1313 109 HOH HOH . E 5 HOH A 114 1314 112 HOH HOH . E 5 HOH A 115 1315 113 HOH HOH . E 5 HOH A 116 1316 116 HOH HOH . E 5 HOH A 117 1317 117 HOH HOH . E 5 HOH A 118 1318 118 HOH HOH . E 5 HOH A 119 1319 119 HOH HOH . E 5 HOH A 120 1320 120 HOH HOH . E 5 HOH A 121 1321 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.723 _atom_site.Cartn_y 211.838 _atom_site.Cartn_z -0.164 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #