data_4WKW # _model_server_result.job_id gSATq0XTs5cWhjPWeQdLog _model_server_result.datetime_utc '2024-11-14 19:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4WKW # _exptl.entry_id 4WKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.52 _cell.angle_gamma 90 _cell.entry_id 4WKW _cell.length_a 84.57 _cell.length_b 84.19 _cell.length_c 71.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 A,C,F 3 1,2 B,D,E,G 3 3,4 A,C,F 4 1 B,D,E,G 4 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 55.952751 0 65.752393 3 'crystal symmetry operation' 3_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 42.285 -42.095 0 4 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 13.667751 -42.095 65.752393 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4WKW _atom_sites.fract_transf_matrix[1][1] 0.011825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005146 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 1 EDO EDO . D 2 EDO B 1 301 2 EDO EDO . E 2 EDO B 1 302 3 EDO EDO . F 3 HOH A 1 401 53 HOH HOH . F 3 HOH A 2 402 76 HOH HOH . F 3 HOH A 3 403 30 HOH HOH . F 3 HOH A 4 404 73 HOH HOH . F 3 HOH A 5 405 37 HOH HOH . F 3 HOH A 6 406 4 HOH HOH . F 3 HOH A 7 407 24 HOH HOH . F 3 HOH A 8 408 75 HOH HOH . F 3 HOH A 9 409 14 HOH HOH . F 3 HOH A 10 410 87 HOH HOH . F 3 HOH A 11 411 26 HOH HOH . F 3 HOH A 12 412 49 HOH HOH . F 3 HOH A 13 413 64 HOH HOH . F 3 HOH A 14 414 79 HOH HOH . F 3 HOH A 15 415 1 HOH HOH . F 3 HOH A 16 416 6 HOH HOH . F 3 HOH A 17 417 11 HOH HOH . F 3 HOH A 18 418 13 HOH HOH . F 3 HOH A 19 419 16 HOH HOH . F 3 HOH A 20 420 18 HOH HOH . F 3 HOH A 21 421 19 HOH HOH . F 3 HOH A 22 422 21 HOH HOH . F 3 HOH A 23 423 22 HOH HOH . F 3 HOH A 24 424 23 HOH HOH . F 3 HOH A 25 425 27 HOH HOH . F 3 HOH A 26 426 29 HOH HOH . F 3 HOH A 27 427 34 HOH HOH . F 3 HOH A 28 428 35 HOH HOH . F 3 HOH A 29 429 36 HOH HOH . F 3 HOH A 30 430 38 HOH HOH . F 3 HOH A 31 431 40 HOH HOH . F 3 HOH A 32 432 41 HOH HOH . F 3 HOH A 33 433 42 HOH HOH . F 3 HOH A 34 434 43 HOH HOH . F 3 HOH A 35 435 44 HOH HOH . F 3 HOH A 36 436 45 HOH HOH . F 3 HOH A 37 437 48 HOH HOH . F 3 HOH A 38 438 51 HOH HOH . F 3 HOH A 39 439 52 HOH HOH . F 3 HOH A 40 440 54 HOH HOH . F 3 HOH A 41 441 57 HOH HOH . F 3 HOH A 42 442 58 HOH HOH . F 3 HOH A 43 443 60 HOH HOH . F 3 HOH A 44 444 61 HOH HOH . F 3 HOH A 45 445 63 HOH HOH . F 3 HOH A 46 446 66 HOH HOH . F 3 HOH A 47 447 68 HOH HOH . F 3 HOH A 48 448 70 HOH HOH . F 3 HOH A 49 449 74 HOH HOH . F 3 HOH A 50 450 80 HOH HOH . F 3 HOH A 51 451 82 HOH HOH . F 3 HOH A 52 452 84 HOH HOH . F 3 HOH A 53 453 85 HOH HOH . F 3 HOH A 54 454 86 HOH HOH . F 3 HOH A 55 455 88 HOH HOH . F 3 HOH A 56 456 89 HOH HOH . F 3 HOH A 57 457 90 HOH HOH . F 3 HOH A 58 458 91 HOH HOH . F 3 HOH A 59 459 94 HOH HOH . F 3 HOH A 60 460 97 HOH HOH . G 3 HOH B 1 401 56 HOH HOH . G 3 HOH B 2 402 33 HOH HOH . G 3 HOH B 3 403 55 HOH HOH . G 3 HOH B 4 404 9 HOH HOH . G 3 HOH B 5 405 65 HOH HOH . G 3 HOH B 6 406 2 HOH HOH . G 3 HOH B 7 407 3 HOH HOH . G 3 HOH B 8 408 5 HOH HOH . G 3 HOH B 9 409 7 HOH HOH . G 3 HOH B 10 410 8 HOH HOH . G 3 HOH B 11 411 10 HOH HOH . G 3 HOH B 12 412 12 HOH HOH . G 3 HOH B 13 413 15 HOH HOH . G 3 HOH B 14 414 17 HOH HOH . G 3 HOH B 15 415 20 HOH HOH . G 3 HOH B 16 416 25 HOH HOH . G 3 HOH B 17 417 28 HOH HOH . G 3 HOH B 18 418 31 HOH HOH . G 3 HOH B 19 419 32 HOH HOH . G 3 HOH B 20 420 39 HOH HOH . G 3 HOH B 21 421 46 HOH HOH . G 3 HOH B 22 422 47 HOH HOH . G 3 HOH B 23 423 50 HOH HOH . G 3 HOH B 24 424 59 HOH HOH . G 3 HOH B 25 425 62 HOH HOH . G 3 HOH B 26 426 67 HOH HOH . G 3 HOH B 27 427 69 HOH HOH . G 3 HOH B 28 428 71 HOH HOH . G 3 HOH B 29 429 77 HOH HOH . G 3 HOH B 30 430 78 HOH HOH . G 3 HOH B 31 431 81 HOH HOH . G 3 HOH B 32 432 83 HOH HOH . G 3 HOH B 33 433 92 HOH HOH . G 3 HOH B 34 434 93 HOH HOH . G 3 HOH B 35 435 95 HOH HOH . G 3 HOH B 36 436 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 17.489 97.262 10.173 1 53.44 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . C 2 18.145 97.943 11.251 1 53.4 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . C 2 15.97 97.352 10.321 1 52.95 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . C 2 15.502 96.557 11.421 1 51.72 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #