data_4WKX # _model_server_result.job_id F6zzMPdcp04wqdYY-zmR1w _model_server_result.datetime_utc '2024-10-18 19:30:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 4WKX # _exptl.entry_id 4WKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WKX _cell.length_a 47.774 _cell.length_b 47.774 _cell.length_c 241.641 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1 B,F,G,H,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 23.887 -41.373498 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A N ALA 1 A ALA 1 1_555 C CU CU . A CU 201 4_565 ? ? ? ? A ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 C CU CU . A CU 201 4_565 ? ? ? ? A ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A OE1 GLU 46 A GLU 46 1_555 E CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 A NE2 HIS 83 A HIS 83 1_555 C CU CU . A CU 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.824 ? metalc ? metalc5 A NE2 HIS 83 A HIS 83 1_555 C CU CU . A CU 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.635 ? metalc ? metalc6 A SG CYS 112 A CYS 112 1_555 E CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc7 A ND1 HIS 117 A HIS 117 1_555 E CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc8 A ND1 HIS 121 A HIS 121 1_555 E CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc9 C CU CU . A CU 201 1_555 D N TRS . A TRS 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc10 C CU CU . A CU 201 1_555 D O3 TRS . A TRS 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc11 C CU CU . A CU 201 1_555 D N TRS . A TRS 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc12 C CU CU . A CU 201 1_555 I O HOH . A HOH 313 4_455 ? A ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc13 C CU CU . A CU 201 1_555 I O HOH . A HOH 313 4_455 ? B ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc14 B N ALA 1 B ALA 1 1_555 F CU CU . B CU 201 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc15 B O ALA 1 B ALA 1 1_555 F CU CU . B CU 201 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc16 B OE1 GLU 46 B GLU 46 1_555 H CU CU . B CU 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc17 B OE2 GLU 46 B GLU 46 1_555 H CU CU . B CU 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc18 B NE2 HIS 83 B HIS 83 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc19 B SG CYS 112 B CYS 112 1_555 H CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc20 B ND1 HIS 117 B HIS 117 1_555 H CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc21 B ND1 HIS 121 B HIS 121 1_555 H CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc22 F CU CU . B CU 201 1_555 G O3 TRS . B TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc23 F CU CU . B CU 201 1_555 G N TRS . B TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 4WKX _atom_sites.fract_transf_matrix[1][1] 0.020932 _atom_sites.fract_transf_matrix[1][2] 0.012085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 201 1 CU CU . D 3 TRS A 1 202 1 TRS TRS . E 2 CU A 1 203 1 CU CU . F 2 CU B 1 201 1 CU CU . G 3 TRS B 1 202 2 TRS TRS . H 2 CU B 1 203 1 CU CU . I 4 HOH A 1 301 69 HOH HOH . I 4 HOH A 2 302 34 HOH HOH . I 4 HOH A 3 303 89 HOH HOH . I 4 HOH A 4 304 3 HOH HOH . I 4 HOH A 5 305 2 HOH HOH . I 4 HOH A 6 306 119 HOH HOH . I 4 HOH A 7 307 104 HOH HOH . I 4 HOH A 8 308 73 HOH HOH . I 4 HOH A 9 309 17 HOH HOH . I 4 HOH A 10 310 27 HOH HOH . I 4 HOH A 11 311 18 HOH HOH . I 4 HOH A 12 312 33 HOH HOH . I 4 HOH A 13 313 1 HOH HOH . I 4 HOH A 14 314 12 HOH HOH . I 4 HOH A 15 315 37 HOH HOH . I 4 HOH A 16 316 113 HOH HOH . I 4 HOH A 17 317 32 HOH HOH . I 4 HOH A 18 318 56 HOH HOH . I 4 HOH A 19 319 116 HOH HOH . I 4 HOH A 20 320 64 HOH HOH . I 4 HOH A 21 321 29 HOH HOH . I 4 HOH A 22 322 75 HOH HOH . I 4 HOH A 23 323 76 HOH HOH . I 4 HOH A 24 324 60 HOH HOH . I 4 HOH A 25 325 16 HOH HOH . I 4 HOH A 26 326 38 HOH HOH . I 4 HOH A 27 327 118 HOH HOH . I 4 HOH A 28 328 14 HOH HOH . I 4 HOH A 29 329 80 HOH HOH . I 4 HOH A 30 330 109 HOH HOH . I 4 HOH A 31 331 4 HOH HOH . I 4 HOH A 32 332 5 HOH HOH . I 4 HOH A 33 333 7 HOH HOH . I 4 HOH A 34 334 9 HOH HOH . I 4 HOH A 35 335 10 HOH HOH . I 4 HOH A 36 336 11 HOH HOH . I 4 HOH A 37 337 15 HOH HOH . I 4 HOH A 38 338 20 HOH HOH . I 4 HOH A 39 339 21 HOH HOH . I 4 HOH A 40 340 22 HOH HOH . I 4 HOH A 41 341 23 HOH HOH . I 4 HOH A 42 342 28 HOH HOH . I 4 HOH A 43 343 31 HOH HOH . I 4 HOH A 44 344 35 HOH HOH . I 4 HOH A 45 345 36 HOH HOH . I 4 HOH A 46 346 39 HOH HOH . I 4 HOH A 47 347 41 HOH HOH . I 4 HOH A 48 348 43 HOH HOH . I 4 HOH A 49 349 44 HOH HOH . I 4 HOH A 50 350 45 HOH HOH . I 4 HOH A 51 351 49 HOH HOH . I 4 HOH A 52 352 50 HOH HOH . I 4 HOH A 53 353 51 HOH HOH . I 4 HOH A 54 354 52 HOH HOH . I 4 HOH A 55 355 54 HOH HOH . I 4 HOH A 56 356 55 HOH HOH . I 4 HOH A 57 357 57 HOH HOH . I 4 HOH A 58 358 58 HOH HOH . I 4 HOH A 59 359 59 HOH HOH . I 4 HOH A 60 360 62 HOH HOH . I 4 HOH A 61 361 66 HOH HOH . I 4 HOH A 62 362 67 HOH HOH . I 4 HOH A 63 363 68 HOH HOH . I 4 HOH A 64 364 78 HOH HOH . I 4 HOH A 65 365 79 HOH HOH . I 4 HOH A 66 366 81 HOH HOH . I 4 HOH A 67 367 83 HOH HOH . I 4 HOH A 68 368 84 HOH HOH . I 4 HOH A 69 369 85 HOH HOH . I 4 HOH A 70 370 86 HOH HOH . I 4 HOH A 71 371 87 HOH HOH . I 4 HOH A 72 372 90 HOH HOH . I 4 HOH A 73 373 91 HOH HOH . I 4 HOH A 74 374 92 HOH HOH . I 4 HOH A 75 375 93 HOH HOH . I 4 HOH A 76 376 108 HOH HOH . I 4 HOH A 77 377 117 HOH HOH . I 4 HOH A 78 378 120 HOH HOH . I 4 HOH A 79 379 121 HOH HOH . I 4 HOH A 80 380 122 HOH HOH . J 4 HOH B 1 301 13 HOH HOH . J 4 HOH B 2 302 97 HOH HOH . J 4 HOH B 3 303 46 HOH HOH . J 4 HOH B 4 304 112 HOH HOH . J 4 HOH B 5 305 6 HOH HOH . J 4 HOH B 6 306 24 HOH HOH . J 4 HOH B 7 307 127 HOH HOH . J 4 HOH B 8 308 25 HOH HOH . J 4 HOH B 9 309 42 HOH HOH . J 4 HOH B 10 310 74 HOH HOH . J 4 HOH B 11 311 40 HOH HOH . J 4 HOH B 12 312 88 HOH HOH . J 4 HOH B 13 313 115 HOH HOH . J 4 HOH B 14 314 30 HOH HOH . J 4 HOH B 15 315 63 HOH HOH . J 4 HOH B 16 316 26 HOH HOH . J 4 HOH B 17 317 123 HOH HOH . J 4 HOH B 18 318 102 HOH HOH . J 4 HOH B 19 319 111 HOH HOH . J 4 HOH B 20 320 8 HOH HOH . J 4 HOH B 21 321 19 HOH HOH . J 4 HOH B 22 322 48 HOH HOH . J 4 HOH B 23 323 53 HOH HOH . J 4 HOH B 24 324 61 HOH HOH . J 4 HOH B 25 325 65 HOH HOH . J 4 HOH B 26 326 70 HOH HOH . J 4 HOH B 27 327 71 HOH HOH . J 4 HOH B 28 328 72 HOH HOH . J 4 HOH B 29 329 77 HOH HOH . J 4 HOH B 30 330 82 HOH HOH . J 4 HOH B 31 331 94 HOH HOH . J 4 HOH B 32 332 95 HOH HOH . J 4 HOH B 33 333 96 HOH HOH . J 4 HOH B 34 334 98 HOH HOH . J 4 HOH B 35 335 99 HOH HOH . J 4 HOH B 36 336 100 HOH HOH . J 4 HOH B 37 337 101 HOH HOH . J 4 HOH B 38 338 103 HOH HOH . J 4 HOH B 39 339 105 HOH HOH . J 4 HOH B 40 340 106 HOH HOH . J 4 HOH B 41 341 107 HOH HOH . J 4 HOH B 42 342 110 HOH HOH . J 4 HOH B 43 343 114 HOH HOH . J 4 HOH B 44 344 124 HOH HOH . J 4 HOH B 45 345 125 HOH HOH . J 4 HOH B 46 346 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . G 3 -43.475 25.74 35.112 1 21.32 ? C TRS 202 B 1 HETATM 2 C C1 TRS . . . G 3 -44.669 25.467 36.02 1 23.1 ? C1 TRS 202 B 1 HETATM 3 C C2 TRS . . . G 3 -43.879 26.616 33.938 1 22.43 ? C2 TRS 202 B 1 HETATM 4 C C3 TRS . . . G 3 -42.919 24.423 34.568 1 19.39 ? C3 TRS 202 B 1 HETATM 5 N N TRS . . . G 3 -42.445 26.485 35.843 1 23.79 ? N TRS 202 B 1 HETATM 6 O O1 TRS . . . G 3 -45.219 26.689 36.459 1 23.17 ? O1 TRS 202 B 1 HETATM 7 O O2 TRS . . . G 3 -44.941 25.995 33.251 1 19.74 ? O2 TRS 202 B 1 HETATM 8 O O3 TRS . . . G 3 -42.543 23.551 35.614 1 21.46 ? O3 TRS 202 B 1 HETATM 9 H H11 TRS . . . G 3 -44.351 24.876 36.879 1 27.72 ? H11 TRS 202 B 1 HETATM 10 H H12 TRS . . . G 3 -45.423 24.898 35.476 1 27.72 ? H12 TRS 202 B 1 HETATM 11 H H21 TRS . . . G 3 -43.031 26.751 33.267 1 26.91 ? H21 TRS 202 B 1 HETATM 12 H H22 TRS . . . G 3 -44.192 27.596 34.297 1 26.91 ? H22 TRS 202 B 1 HETATM 13 H H31 TRS . . . G 3 -43.674 23.939 33.948 1 23.27 ? H31 TRS 202 B 1 HETATM 14 H H32 TRS . . . G 3 -42.052 24.628 33.939 1 23.27 ? H32 TRS 202 B 1 HETATM 15 H HN1 TRS . . . G 3 -42.064 25.986 36.641 1 28.55 ? HN1 TRS 202 B 1 HETATM 16 H HN2 TRS . . . G 3 -42.698 27.448 36.044 1 28.55 ? HN2 TRS 202 B 1 HETATM 17 H HN3 TRS . . . G 3 -41.674 26.555 35.196 1 28.55 ? HN3 TRS 202 B 1 HETATM 18 H HO1 TRS . . . G 3 -45.986 26.511 37.043 1 27.8 ? HO1 TRS 202 B 1 HETATM 19 H HO2 TRS . . . G 3 -45.209 26.554 32.491 1 23.69 ? HO2 TRS 202 B 1 HETATM 20 H HO3 TRS . . . G 3 -42.721 23.981 36.477 1 25.75 ? HO3 TRS 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #