data_4WLK # _model_server_result.job_id VrbqDnTCXTX7SjRdg5Re5A _model_server_result.datetime_utc '2024-11-22 19:56:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wlk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4WLK # _exptl.entry_id 4WLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WLK _cell.length_a 147.21 _cell.length_b 147.21 _cell.length_c 37.87 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H26 N2 O10' _chem_comp.formula_weight 406.385 _chem_comp.id 3QL _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8A C7A 3QL sing 1 n n C7A O7A 3QL doub 2 n n C7A N2A 3QL sing 3 n n N2A C2A 3QL sing 4 n n O3A C3A 3QL sing 5 n n C3A C2A 3QL sing 6 n n C3A C4A 3QL sing 7 n n C2A C1A 3QL sing 8 n n C5B C6B 3QL sing 9 n n C5B O5B 3QL sing 10 n n C5B C4B 3QL sing 11 n n C6B O1B 3QL sing 12 n n C1A O1A 3QL sing 13 n n C1A O5A 3QL sing 14 n n O5B C1B 3QL sing 15 n n O1A C4B 3QL sing 16 n n O4A C4A 3QL sing 17 n n C4A C5A 3QL sing 18 n n O1B C1B 3QL sing 19 n n C4B C3B 3QL sing 20 n n C1B C2B 3QL sing 21 n n O5A C5A 3QL sing 22 n n C5A C6A 3QL sing 23 n n C3B C2B 3QL sing 24 n n C3B O3B 3QL sing 25 n n C2B N2B 3QL sing 26 n n C6A O6A 3QL sing 27 n n N2B C7B 3QL sing 28 n n C7B O7B 3QL doub 29 n n C7B C8B 3QL sing 30 n n C8A H1 3QL sing 31 n n C8A H2 3QL sing 32 n n C8A H3 3QL sing 33 n n N2A H4 3QL sing 34 n n C2A H5 3QL sing 35 n n C3A H6 3QL sing 36 n n O3A H7 3QL sing 37 n n C4A H8 3QL sing 38 n n O4A H9 3QL sing 39 n n C5A H10 3QL sing 40 n n C6A H11 3QL sing 41 n n C6A H12 3QL sing 42 n n O6A H13 3QL sing 43 n n C1A H14 3QL sing 44 n n C4B H15 3QL sing 45 n n C3B H16 3QL sing 46 n n O3B H17 3QL sing 47 n n C5B H18 3QL sing 48 n n C1B H19 3QL sing 49 n n C6B H20 3QL sing 50 n n C6B H21 3QL sing 51 n n C2B H22 3QL sing 52 n n N2B H23 3QL sing 53 n n C8B H24 3QL sing 54 n n C8B H25 3QL sing 55 n n C8B H26 3QL sing 56 n n # _atom_sites.entry_id 4WLK _atom_sites.fract_transf_matrix[1][1] 0.006793 _atom_sites.fract_transf_matrix[1][2] 0.003922 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3QL A 1 301 301 3QL YYZ . D 2 3QL B 1 301 301 3QL YYZ . E 3 HOH A 1 401 139 HOH HOH . E 3 HOH A 2 402 76 HOH HOH . E 3 HOH A 3 403 133 HOH HOH . E 3 HOH A 4 404 126 HOH HOH . E 3 HOH A 5 405 22 HOH HOH . E 3 HOH A 6 406 82 HOH HOH . E 3 HOH A 7 407 53 HOH HOH . E 3 HOH A 8 408 37 HOH HOH . E 3 HOH A 9 409 96 HOH HOH . E 3 HOH A 10 410 107 HOH HOH . E 3 HOH A 11 411 110 HOH HOH . E 3 HOH A 12 412 103 HOH HOH . E 3 HOH A 13 413 34 HOH HOH . E 3 HOH A 14 414 19 HOH HOH . E 3 HOH A 15 415 161 HOH HOH . E 3 HOH A 16 416 72 HOH HOH . E 3 HOH A 17 417 60 HOH HOH . E 3 HOH A 18 418 157 HOH HOH . E 3 HOH A 19 419 153 HOH HOH . E 3 HOH A 20 420 156 HOH HOH . E 3 HOH A 21 421 179 HOH HOH . E 3 HOH A 22 422 167 HOH HOH . E 3 HOH A 23 423 165 HOH HOH . E 3 HOH A 24 424 132 HOH HOH . E 3 HOH A 25 425 78 HOH HOH . E 3 HOH A 26 426 101 HOH HOH . E 3 HOH A 27 427 2 HOH HOH . E 3 HOH A 28 428 4 HOH HOH . E 3 HOH A 29 429 6 HOH HOH . E 3 HOH A 30 430 7 HOH HOH . E 3 HOH A 31 431 11 HOH HOH . E 3 HOH A 32 432 12 HOH HOH . E 3 HOH A 33 433 13 HOH HOH . E 3 HOH A 34 434 16 HOH HOH . E 3 HOH A 35 435 17 HOH HOH . E 3 HOH A 36 436 20 HOH HOH . E 3 HOH A 37 437 21 HOH HOH . E 3 HOH A 38 438 29 HOH HOH . E 3 HOH A 39 439 31 HOH HOH . E 3 HOH A 40 440 33 HOH HOH . E 3 HOH A 41 441 39 HOH HOH . E 3 HOH A 42 442 40 HOH HOH . E 3 HOH A 43 443 41 HOH HOH . E 3 HOH A 44 444 43 HOH HOH . E 3 HOH A 45 445 44 HOH HOH . E 3 HOH A 46 446 46 HOH HOH . E 3 HOH A 47 447 47 HOH HOH . E 3 HOH A 48 448 54 HOH HOH . E 3 HOH A 49 449 55 HOH HOH . E 3 HOH A 50 450 58 HOH HOH . E 3 HOH A 51 451 61 HOH HOH . E 3 HOH A 52 452 63 HOH HOH . E 3 HOH A 53 453 66 HOH HOH . E 3 HOH A 54 454 68 HOH HOH . E 3 HOH A 55 455 74 HOH HOH . E 3 HOH A 56 456 75 HOH HOH . E 3 HOH A 57 457 81 HOH HOH . E 3 HOH A 58 458 85 HOH HOH . E 3 HOH A 59 459 87 HOH HOH . E 3 HOH A 60 460 88 HOH HOH . E 3 HOH A 61 461 89 HOH HOH . E 3 HOH A 62 462 92 HOH HOH . E 3 HOH A 63 463 93 HOH HOH . E 3 HOH A 64 464 106 HOH HOH . E 3 HOH A 65 465 108 HOH HOH . E 3 HOH A 66 466 109 HOH HOH . E 3 HOH A 67 467 111 HOH HOH . E 3 HOH A 68 468 114 HOH HOH . E 3 HOH A 69 469 120 HOH HOH . E 3 HOH A 70 470 125 HOH HOH . E 3 HOH A 71 471 130 HOH HOH . E 3 HOH A 72 472 138 HOH HOH . E 3 HOH A 73 473 140 HOH HOH . E 3 HOH A 74 474 142 HOH HOH . E 3 HOH A 75 475 143 HOH HOH . E 3 HOH A 76 476 148 HOH HOH . E 3 HOH A 77 477 149 HOH HOH . E 3 HOH A 78 478 154 HOH HOH . E 3 HOH A 79 479 155 HOH HOH . E 3 HOH A 80 480 160 HOH HOH . E 3 HOH A 81 481 162 HOH HOH . E 3 HOH A 82 482 163 HOH HOH . E 3 HOH A 83 483 164 HOH HOH . E 3 HOH A 84 484 166 HOH HOH . E 3 HOH A 85 485 168 HOH HOH . E 3 HOH A 86 486 171 HOH HOH . E 3 HOH A 87 487 173 HOH HOH . E 3 HOH A 88 488 180 HOH HOH . E 3 HOH A 89 489 186 HOH HOH . E 3 HOH A 90 490 187 HOH HOH . F 3 HOH B 1 401 176 HOH HOH . F 3 HOH B 2 402 121 HOH HOH . F 3 HOH B 3 403 182 HOH HOH . F 3 HOH B 4 404 181 HOH HOH . F 3 HOH B 5 405 105 HOH HOH . F 3 HOH B 6 406 8 HOH HOH . F 3 HOH B 7 407 99 HOH HOH . F 3 HOH B 8 408 169 HOH HOH . F 3 HOH B 9 409 25 HOH HOH . F 3 HOH B 10 410 27 HOH HOH . F 3 HOH B 11 411 100 HOH HOH . F 3 HOH B 12 412 9 HOH HOH . F 3 HOH B 13 413 28 HOH HOH . F 3 HOH B 14 414 172 HOH HOH . F 3 HOH B 15 415 42 HOH HOH . F 3 HOH B 16 416 102 HOH HOH . F 3 HOH B 17 417 86 HOH HOH . F 3 HOH B 18 418 70 HOH HOH . F 3 HOH B 19 419 91 HOH HOH . F 3 HOH B 20 420 50 HOH HOH . F 3 HOH B 21 421 69 HOH HOH . F 3 HOH B 22 422 115 HOH HOH . F 3 HOH B 23 423 118 HOH HOH . F 3 HOH B 24 424 49 HOH HOH . F 3 HOH B 25 425 129 HOH HOH . F 3 HOH B 26 426 150 HOH HOH . F 3 HOH B 27 427 104 HOH HOH . F 3 HOH B 28 428 57 HOH HOH . F 3 HOH B 29 429 184 HOH HOH . F 3 HOH B 30 430 131 HOH HOH . F 3 HOH B 31 431 79 HOH HOH . F 3 HOH B 32 432 145 HOH HOH . F 3 HOH B 33 433 59 HOH HOH . F 3 HOH B 34 434 1 HOH HOH . F 3 HOH B 35 435 3 HOH HOH . F 3 HOH B 36 436 5 HOH HOH . F 3 HOH B 37 437 10 HOH HOH . F 3 HOH B 38 438 14 HOH HOH . F 3 HOH B 39 439 15 HOH HOH . F 3 HOH B 40 440 18 HOH HOH . F 3 HOH B 41 441 23 HOH HOH . F 3 HOH B 42 442 24 HOH HOH . F 3 HOH B 43 443 26 HOH HOH . F 3 HOH B 44 444 30 HOH HOH . F 3 HOH B 45 445 32 HOH HOH . F 3 HOH B 46 446 35 HOH HOH . F 3 HOH B 47 447 36 HOH HOH . F 3 HOH B 48 448 38 HOH HOH . F 3 HOH B 49 449 45 HOH HOH . F 3 HOH B 50 450 48 HOH HOH . F 3 HOH B 51 451 51 HOH HOH . F 3 HOH B 52 452 52 HOH HOH . F 3 HOH B 53 453 56 HOH HOH . F 3 HOH B 54 454 62 HOH HOH . F 3 HOH B 55 455 64 HOH HOH . F 3 HOH B 56 456 65 HOH HOH . F 3 HOH B 57 457 67 HOH HOH . F 3 HOH B 58 458 71 HOH HOH . F 3 HOH B 59 459 73 HOH HOH . F 3 HOH B 60 460 77 HOH HOH . F 3 HOH B 61 461 80 HOH HOH . F 3 HOH B 62 462 83 HOH HOH . F 3 HOH B 63 463 84 HOH HOH . F 3 HOH B 64 464 90 HOH HOH . F 3 HOH B 65 465 94 HOH HOH . F 3 HOH B 66 466 95 HOH HOH . F 3 HOH B 67 467 97 HOH HOH . F 3 HOH B 68 468 98 HOH HOH . F 3 HOH B 69 469 112 HOH HOH . F 3 HOH B 70 470 113 HOH HOH . F 3 HOH B 71 471 116 HOH HOH . F 3 HOH B 72 472 117 HOH HOH . F 3 HOH B 73 473 119 HOH HOH . F 3 HOH B 74 474 122 HOH HOH . F 3 HOH B 75 475 123 HOH HOH . F 3 HOH B 76 476 124 HOH HOH . F 3 HOH B 77 477 127 HOH HOH . F 3 HOH B 78 478 134 HOH HOH . F 3 HOH B 79 479 135 HOH HOH . F 3 HOH B 80 480 137 HOH HOH . F 3 HOH B 81 481 141 HOH HOH . F 3 HOH B 82 482 146 HOH HOH . F 3 HOH B 83 483 147 HOH HOH . F 3 HOH B 84 484 151 HOH HOH . F 3 HOH B 85 485 152 HOH HOH . F 3 HOH B 86 486 158 HOH HOH . F 3 HOH B 87 487 159 HOH HOH . F 3 HOH B 88 488 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7A 3QL . . . C 2 -30.977 29.191 3.946 1 25.3 ? O7A 3QL 301 A 1 HETATM 2 C C7A 3QL . . . C 2 -29.825 29.073 3.566 1 22.17 ? C7A 3QL 301 A 1 HETATM 3 C C8A 3QL . . . C 2 -29.502 28.527 2.205 1 19.86 ? C8A 3QL 301 A 1 HETATM 4 N N2A 3QL . . . C 2 -28.777 29.415 4.314 1 22.14 ? N2A 3QL 301 A 1 HETATM 5 C C2A 3QL . . . C 2 -28.87 29.966 5.651 1 23.88 ? C2A 3QL 301 A 1 HETATM 6 C C3A 3QL . . . C 2 -28.425 31.419 5.611 1 25.48 ? C3A 3QL 301 A 1 HETATM 7 O O3A 3QL . . . C 2 -29.334 32.18 4.808 1 26.67 ? O3A 3QL 301 A 1 HETATM 8 C C4A 3QL . . . C 2 -28.364 32.005 7.013 1 28.05 ? C4A 3QL 301 A 1 HETATM 9 O O4A 3QL . . . C 2 -27.814 33.324 6.932 1 27.48 ? O4A 3QL 301 A 1 HETATM 10 C C5A 3QL . . . C 2 -27.513 31.112 7.914 1 28.83 ? C5A 3QL 301 A 1 HETATM 11 C C6A 3QL . . . C 2 -27.496 31.611 9.355 1 38.19 ? C6A 3QL 301 A 1 HETATM 12 O O6A 3QL . . . C 2 -26.845 30.647 10.191 1 46.16 ? O6A 3QL 301 A 1 HETATM 13 O O5A 3QL . . . C 2 -28.026 29.779 7.902 1 26.81 ? O5A 3QL 301 A 1 HETATM 14 C C1A 3QL . . . C 2 -27.984 29.182 6.607 1 25.24 ? C1A 3QL 301 A 1 HETATM 15 O O1A 3QL . . . C 2 -28.428 27.829 6.702 1 25.94 ? O1A 3QL 301 A 1 HETATM 16 C C4B 3QL . . . C 2 -27.423 26.985 7.263 1 26.53 ? C4B 3QL 301 A 1 HETATM 17 C C3B 3QL . . . C 2 -27.918 26.319 8.542 1 29.67 ? C3B 3QL 301 A 1 HETATM 18 O O3B 3QL . . . C 2 -27.953 27.279 9.601 1 31.96 ? O3B 3QL 301 A 1 HETATM 19 C C5B 3QL . . . C 2 -27.014 25.923 6.253 1 27.23 ? C5B 3QL 301 A 1 HETATM 20 O O5B 3QL . . . C 2 -27.597 24.698 6.662 1 28.84 ? O5B 3QL 301 A 1 HETATM 21 C C1B 3QL . . . C 2 -26.729 24.285 7.71 1 29.21 ? C1B 3QL 301 A 1 HETATM 22 O O1B 3QL . . . C 2 -25.412 24.54 7.227 1 28.07 ? O1B 3QL 301 A 1 HETATM 23 C C6B 3QL . . . C 2 -25.523 25.615 6.293 1 27.34 ? C6B 3QL 301 A 1 HETATM 24 C C2B 3QL . . . C 2 -26.99 25.167 8.923 1 30.75 ? C2B 3QL 301 A 1 HETATM 25 N N2B 3QL . . . C 2 -27.56 24.398 10.017 1 38.28 ? N2B 3QL 301 A 1 HETATM 26 C C7B 3QL . . . C 2 -27.04 24.399 11.247 1 45.32 ? C7B 3QL 301 A 1 HETATM 27 O O7B 3QL . . . C 2 -26.047 25.041 11.554 1 47.03 ? O7B 3QL 301 A 1 HETATM 28 C C8B 3QL . . . C 2 -27.766 23.548 12.249 1 50.54 ? C8B 3QL 301 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #