data_4WLK
#
_model_server_result.job_id            uGw7PcjFxTWfcFAH-BWYuA 
_model_server_result.datetime_utc      '2024-11-22 20:00:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wlk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4WLK 
#
_exptl.entry_id    4WLK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              406.385 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4WLK 
_cell.length_a            147.21 
_cell.length_b            147.21 
_cell.length_c            37.87 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WLK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H26 N2 O10' 
_chem_comp.formula_weight    406.385 
_chem_comp.id                3QL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8A C7A 3QL sing 1 n n 
C7A O7A 3QL doub 2 n n 
C7A N2A 3QL sing 3 n n 
N2A C2A 3QL sing 4 n n 
O3A C3A 3QL sing 5 n n 
C3A C2A 3QL sing 6 n n 
C3A C4A 3QL sing 7 n n 
C2A C1A 3QL sing 8 n n 
C5B C6B 3QL sing 9 n n 
C5B O5B 3QL sing 10 n n 
C5B C4B 3QL sing 11 n n 
C6B O1B 3QL sing 12 n n 
C1A O1A 3QL sing 13 n n 
C1A O5A 3QL sing 14 n n 
O5B C1B 3QL sing 15 n n 
O1A C4B 3QL sing 16 n n 
O4A C4A 3QL sing 17 n n 
C4A C5A 3QL sing 18 n n 
O1B C1B 3QL sing 19 n n 
C4B C3B 3QL sing 20 n n 
C1B C2B 3QL sing 21 n n 
O5A C5A 3QL sing 22 n n 
C5A C6A 3QL sing 23 n n 
C3B C2B 3QL sing 24 n n 
C3B O3B 3QL sing 25 n n 
C2B N2B 3QL sing 26 n n 
C6A O6A 3QL sing 27 n n 
N2B C7B 3QL sing 28 n n 
C7B O7B 3QL doub 29 n n 
C7B C8B 3QL sing 30 n n 
C8A H1 3QL sing 31 n n 
C8A H2 3QL sing 32 n n 
C8A H3 3QL sing 33 n n 
N2A H4 3QL sing 34 n n 
C2A H5 3QL sing 35 n n 
C3A H6 3QL sing 36 n n 
O3A H7 3QL sing 37 n n 
C4A H8 3QL sing 38 n n 
O4A H9 3QL sing 39 n n 
C5A H10 3QL sing 40 n n 
C6A H11 3QL sing 41 n n 
C6A H12 3QL sing 42 n n 
O6A H13 3QL sing 43 n n 
C1A H14 3QL sing 44 n n 
C4B H15 3QL sing 45 n n 
C3B H16 3QL sing 46 n n 
O3B H17 3QL sing 47 n n 
C5B H18 3QL sing 48 n n 
C1B H19 3QL sing 49 n n 
C6B H20 3QL sing 50 n n 
C6B H21 3QL sing 51 n n 
C2B H22 3QL sing 52 n n 
N2B H23 3QL sing 53 n n 
C8B H24 3QL sing 54 n n 
C8B H25 3QL sing 55 n n 
C8B H26 3QL sing 56 n n 
#
_atom_sites.entry_id                     4WLK 
_atom_sites.fract_transf_matrix[1][1]    0.006793 
_atom_sites.fract_transf_matrix[1][2]    0.003922 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3QL A 1 301 301 3QL YYZ . 
D 2 3QL B 1 301 301 3QL YYZ . 
E 3 HOH A 1 401 139 HOH HOH . 
E 3 HOH A 2 402 76 HOH HOH . 
E 3 HOH A 3 403 133 HOH HOH . 
E 3 HOH A 4 404 126 HOH HOH . 
E 3 HOH A 5 405 22 HOH HOH . 
E 3 HOH A 6 406 82 HOH HOH . 
E 3 HOH A 7 407 53 HOH HOH . 
E 3 HOH A 8 408 37 HOH HOH . 
E 3 HOH A 9 409 96 HOH HOH . 
E 3 HOH A 10 410 107 HOH HOH . 
E 3 HOH A 11 411 110 HOH HOH . 
E 3 HOH A 12 412 103 HOH HOH . 
E 3 HOH A 13 413 34 HOH HOH . 
E 3 HOH A 14 414 19 HOH HOH . 
E 3 HOH A 15 415 161 HOH HOH . 
E 3 HOH A 16 416 72 HOH HOH . 
E 3 HOH A 17 417 60 HOH HOH . 
E 3 HOH A 18 418 157 HOH HOH . 
E 3 HOH A 19 419 153 HOH HOH . 
E 3 HOH A 20 420 156 HOH HOH . 
E 3 HOH A 21 421 179 HOH HOH . 
E 3 HOH A 22 422 167 HOH HOH . 
E 3 HOH A 23 423 165 HOH HOH . 
E 3 HOH A 24 424 132 HOH HOH . 
E 3 HOH A 25 425 78 HOH HOH . 
E 3 HOH A 26 426 101 HOH HOH . 
E 3 HOH A 27 427 2 HOH HOH . 
E 3 HOH A 28 428 4 HOH HOH . 
E 3 HOH A 29 429 6 HOH HOH . 
E 3 HOH A 30 430 7 HOH HOH . 
E 3 HOH A 31 431 11 HOH HOH . 
E 3 HOH A 32 432 12 HOH HOH . 
E 3 HOH A 33 433 13 HOH HOH . 
E 3 HOH A 34 434 16 HOH HOH . 
E 3 HOH A 35 435 17 HOH HOH . 
E 3 HOH A 36 436 20 HOH HOH . 
E 3 HOH A 37 437 21 HOH HOH . 
E 3 HOH A 38 438 29 HOH HOH . 
E 3 HOH A 39 439 31 HOH HOH . 
E 3 HOH A 40 440 33 HOH HOH . 
E 3 HOH A 41 441 39 HOH HOH . 
E 3 HOH A 42 442 40 HOH HOH . 
E 3 HOH A 43 443 41 HOH HOH . 
E 3 HOH A 44 444 43 HOH HOH . 
E 3 HOH A 45 445 44 HOH HOH . 
E 3 HOH A 46 446 46 HOH HOH . 
E 3 HOH A 47 447 47 HOH HOH . 
E 3 HOH A 48 448 54 HOH HOH . 
E 3 HOH A 49 449 55 HOH HOH . 
E 3 HOH A 50 450 58 HOH HOH . 
E 3 HOH A 51 451 61 HOH HOH . 
E 3 HOH A 52 452 63 HOH HOH . 
E 3 HOH A 53 453 66 HOH HOH . 
E 3 HOH A 54 454 68 HOH HOH . 
E 3 HOH A 55 455 74 HOH HOH . 
E 3 HOH A 56 456 75 HOH HOH . 
E 3 HOH A 57 457 81 HOH HOH . 
E 3 HOH A 58 458 85 HOH HOH . 
E 3 HOH A 59 459 87 HOH HOH . 
E 3 HOH A 60 460 88 HOH HOH . 
E 3 HOH A 61 461 89 HOH HOH . 
E 3 HOH A 62 462 92 HOH HOH . 
E 3 HOH A 63 463 93 HOH HOH . 
E 3 HOH A 64 464 106 HOH HOH . 
E 3 HOH A 65 465 108 HOH HOH . 
E 3 HOH A 66 466 109 HOH HOH . 
E 3 HOH A 67 467 111 HOH HOH . 
E 3 HOH A 68 468 114 HOH HOH . 
E 3 HOH A 69 469 120 HOH HOH . 
E 3 HOH A 70 470 125 HOH HOH . 
E 3 HOH A 71 471 130 HOH HOH . 
E 3 HOH A 72 472 138 HOH HOH . 
E 3 HOH A 73 473 140 HOH HOH . 
E 3 HOH A 74 474 142 HOH HOH . 
E 3 HOH A 75 475 143 HOH HOH . 
E 3 HOH A 76 476 148 HOH HOH . 
E 3 HOH A 77 477 149 HOH HOH . 
E 3 HOH A 78 478 154 HOH HOH . 
E 3 HOH A 79 479 155 HOH HOH . 
E 3 HOH A 80 480 160 HOH HOH . 
E 3 HOH A 81 481 162 HOH HOH . 
E 3 HOH A 82 482 163 HOH HOH . 
E 3 HOH A 83 483 164 HOH HOH . 
E 3 HOH A 84 484 166 HOH HOH . 
E 3 HOH A 85 485 168 HOH HOH . 
E 3 HOH A 86 486 171 HOH HOH . 
E 3 HOH A 87 487 173 HOH HOH . 
E 3 HOH A 88 488 180 HOH HOH . 
E 3 HOH A 89 489 186 HOH HOH . 
E 3 HOH A 90 490 187 HOH HOH . 
F 3 HOH B 1 401 176 HOH HOH . 
F 3 HOH B 2 402 121 HOH HOH . 
F 3 HOH B 3 403 182 HOH HOH . 
F 3 HOH B 4 404 181 HOH HOH . 
F 3 HOH B 5 405 105 HOH HOH . 
F 3 HOH B 6 406 8 HOH HOH . 
F 3 HOH B 7 407 99 HOH HOH . 
F 3 HOH B 8 408 169 HOH HOH . 
F 3 HOH B 9 409 25 HOH HOH . 
F 3 HOH B 10 410 27 HOH HOH . 
F 3 HOH B 11 411 100 HOH HOH . 
F 3 HOH B 12 412 9 HOH HOH . 
F 3 HOH B 13 413 28 HOH HOH . 
F 3 HOH B 14 414 172 HOH HOH . 
F 3 HOH B 15 415 42 HOH HOH . 
F 3 HOH B 16 416 102 HOH HOH . 
F 3 HOH B 17 417 86 HOH HOH . 
F 3 HOH B 18 418 70 HOH HOH . 
F 3 HOH B 19 419 91 HOH HOH . 
F 3 HOH B 20 420 50 HOH HOH . 
F 3 HOH B 21 421 69 HOH HOH . 
F 3 HOH B 22 422 115 HOH HOH . 
F 3 HOH B 23 423 118 HOH HOH . 
F 3 HOH B 24 424 49 HOH HOH . 
F 3 HOH B 25 425 129 HOH HOH . 
F 3 HOH B 26 426 150 HOH HOH . 
F 3 HOH B 27 427 104 HOH HOH . 
F 3 HOH B 28 428 57 HOH HOH . 
F 3 HOH B 29 429 184 HOH HOH . 
F 3 HOH B 30 430 131 HOH HOH . 
F 3 HOH B 31 431 79 HOH HOH . 
F 3 HOH B 32 432 145 HOH HOH . 
F 3 HOH B 33 433 59 HOH HOH . 
F 3 HOH B 34 434 1 HOH HOH . 
F 3 HOH B 35 435 3 HOH HOH . 
F 3 HOH B 36 436 5 HOH HOH . 
F 3 HOH B 37 437 10 HOH HOH . 
F 3 HOH B 38 438 14 HOH HOH . 
F 3 HOH B 39 439 15 HOH HOH . 
F 3 HOH B 40 440 18 HOH HOH . 
F 3 HOH B 41 441 23 HOH HOH . 
F 3 HOH B 42 442 24 HOH HOH . 
F 3 HOH B 43 443 26 HOH HOH . 
F 3 HOH B 44 444 30 HOH HOH . 
F 3 HOH B 45 445 32 HOH HOH . 
F 3 HOH B 46 446 35 HOH HOH . 
F 3 HOH B 47 447 36 HOH HOH . 
F 3 HOH B 48 448 38 HOH HOH . 
F 3 HOH B 49 449 45 HOH HOH . 
F 3 HOH B 50 450 48 HOH HOH . 
F 3 HOH B 51 451 51 HOH HOH . 
F 3 HOH B 52 452 52 HOH HOH . 
F 3 HOH B 53 453 56 HOH HOH . 
F 3 HOH B 54 454 62 HOH HOH . 
F 3 HOH B 55 455 64 HOH HOH . 
F 3 HOH B 56 456 65 HOH HOH . 
F 3 HOH B 57 457 67 HOH HOH . 
F 3 HOH B 58 458 71 HOH HOH . 
F 3 HOH B 59 459 73 HOH HOH . 
F 3 HOH B 60 460 77 HOH HOH . 
F 3 HOH B 61 461 80 HOH HOH . 
F 3 HOH B 62 462 83 HOH HOH . 
F 3 HOH B 63 463 84 HOH HOH . 
F 3 HOH B 64 464 90 HOH HOH . 
F 3 HOH B 65 465 94 HOH HOH . 
F 3 HOH B 66 466 95 HOH HOH . 
F 3 HOH B 67 467 97 HOH HOH . 
F 3 HOH B 68 468 98 HOH HOH . 
F 3 HOH B 69 469 112 HOH HOH . 
F 3 HOH B 70 470 113 HOH HOH . 
F 3 HOH B 71 471 116 HOH HOH . 
F 3 HOH B 72 472 117 HOH HOH . 
F 3 HOH B 73 473 119 HOH HOH . 
F 3 HOH B 74 474 122 HOH HOH . 
F 3 HOH B 75 475 123 HOH HOH . 
F 3 HOH B 76 476 124 HOH HOH . 
F 3 HOH B 77 477 127 HOH HOH . 
F 3 HOH B 78 478 134 HOH HOH . 
F 3 HOH B 79 479 135 HOH HOH . 
F 3 HOH B 80 480 137 HOH HOH . 
F 3 HOH B 81 481 141 HOH HOH . 
F 3 HOH B 82 482 146 HOH HOH . 
F 3 HOH B 83 483 147 HOH HOH . 
F 3 HOH B 84 484 151 HOH HOH . 
F 3 HOH B 85 485 152 HOH HOH . 
F 3 HOH B 86 486 158 HOH HOH . 
F 3 HOH B 87 487 159 HOH HOH . 
F 3 HOH B 88 488 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O7A 3QL . . . D 2 -41.79 3.419 6.556 1 18.23 ? O7A 3QL 301 B 1 
HETATM 2 C C7A 3QL . . . D 2 -40.918 2.62 6.858 1 17.15 ? C7A 3QL 301 B 1 
HETATM 3 C C8A 3QL . . . D 2 -40.212 2.687 8.186 1 15.88 ? C8A 3QL 301 B 1 
HETATM 4 N N2A 3QL . . . D 2 -40.527 1.638 6.049 1 18.39 ? N2A 3QL 301 B 1 
HETATM 5 C C2A 3QL . . . D 2 -41.058 1.402 4.725 1 18.01 ? C2A 3QL 301 B 1 
HETATM 6 C C3A 3QL . . . D 2 -41.91 0.146 4.776 1 21.11 ? C3A 3QL 301 B 1 
HETATM 7 O O3A 3QL . . . D 2 -43.04 0.372 5.624 1 18.01 ? O3A 3QL 301 B 1 
HETATM 8 C C4A 3QL . . . D 2 -42.354 -0.238 3.374 1 22.41 ? C4A 3QL 301 B 1 
HETATM 9 O O4A 3QL . . . D 2 -43.095 -1.462 3.421 1 23.76 ? O4A 3QL 301 B 1 
HETATM 10 C C5A 3QL . . . D 2 -41.124 -0.385 2.484 1 23.85 ? C5A 3QL 301 B 1 
HETATM 11 C C6A 3QL . . . D 2 -41.494 -0.797 1.064 1 26.76 ? C6A 3QL 301 B 1 
HETATM 12 O O6A 3QL . . . D 2 -42.277 0.234 0.452 1 31 ? O6A 3QL 301 B 1 
HETATM 13 O O5A 3QL . . . D 2 -40.429 0.862 2.447 1 20.79 ? O5A 3QL 301 B 1 
HETATM 14 C C1A 3QL . . . D 2 -39.916 1.24 3.726 1 20.45 ? C1A 3QL 301 B 1 
HETATM 15 O O1A 3QL . . . D 2 -39.195 2.465 3.595 1 20.97 ? O1A 3QL 301 B 1 
HETATM 16 C C4B 3QL . . . D 2 -37.914 2.278 2.99 1 22.66 ? C4B 3QL 301 B 1 
HETATM 17 C C3B 3QL . . . D 2 -37.83 3.021 1.664 1 27.48 ? C3B 3QL 301 B 1 
HETATM 18 O O3B 3QL . . . D 2 -38.58 2.32 0.668 1 32.74 ? O3B 3QL 301 B 1 
HETATM 19 C C5B 3QL . . . D 2 -36.816 2.76 3.926 1 24.27 ? C5B 3QL 301 B 1 
HETATM 20 O O5B 3QL . . . D 2 -36.343 4.004 3.439 1 24.95 ? O5B 3QL 301 B 1 
HETATM 21 C C1B 3QL . . . D 2 -35.507 3.61 2.358 1 25.53 ? C1B 3QL 301 B 1 
HETATM 22 O O1B 3QL . . . D 2 -34.767 2.497 2.852 1 25.9 ? O1B 3QL 301 B 1 
HETATM 23 C C6B 3QL . . . D 2 -35.571 1.887 3.865 1 25.78 ? C6B 3QL 301 B 1 
HETATM 24 C C2B 3QL . . . D 2 -36.379 3.127 1.208 1 29.26 ? C2B 3QL 301 B 1 
HETATM 25 N N2B 3QL . . . D 2 -36.285 4.002 0.05 1 38.44 ? N2B 3QL 301 B 1 
HETATM 26 C C7B 3QL . . . D 2 -35.848 3.578 -1.142 1 39.38 ? C7B 3QL 301 B 1 
HETATM 27 O O7B 3QL . . . D 2 -35.464 2.434 -1.347 1 35.14 ? O7B 3QL 301 B 1 
HETATM 28 C C8B 3QL . . . D 2 -35.866 4.603 -2.24 1 44.18 ? C8B 3QL 301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           28 
#