data_4WLU # _model_server_result.job_id tRWg_Fc11JHQ2-3Sdc0lVg _model_server_result.datetime_utc '2025-08-31 19:52:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4WLU # _exptl.entry_id 4WLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WLU _cell.length_a 59.982 _cell.length_b 152.14 _cell.length_c 155.035 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 194 n n C1 O1B LMR sing 195 n n C1 C2 LMR sing 196 n n C2 O2 LMR sing 197 n n C2 C3 LMR sing 198 n n C3 C4 LMR sing 199 n n C4 O4A LMR sing 200 n n C4 O4B LMR doub 201 n n C2 H2 LMR sing 202 n n O2 HO2 LMR sing 203 n n C3 H3 LMR sing 204 n n C3 H3A LMR sing 205 n n O1B H4 LMR sing 206 n n O4A H5 LMR sing 207 n n # _atom_sites.entry_id 4WLU _atom_sites.fract_transf_matrix[1][1] 0.016672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LMR A 1 401 1 LMR LMR . F 3 NAD A 1 402 1 NAD NAD . G 2 LMR B 1 401 2 LMR LMR . H 3 NAD B 1 402 2 NAD NAD . I 2 LMR C 1 401 3 LMR LMR . J 3 NAD C 1 402 3 NAD NAD . K 2 LMR D 1 401 4 LMR LMR . L 3 NAD D 1 402 4 NAD NAD . M 4 HOH A 1 501 90 HOH HOH . M 4 HOH A 2 502 55 HOH HOH . M 4 HOH A 3 503 70 HOH HOH . M 4 HOH A 4 504 4 HOH HOH . M 4 HOH A 5 505 2 HOH HOH . M 4 HOH A 6 506 3 HOH HOH . M 4 HOH A 7 507 5 HOH HOH . M 4 HOH A 8 508 7 HOH HOH . M 4 HOH A 9 509 8 HOH HOH . M 4 HOH A 10 510 10 HOH HOH . M 4 HOH A 11 511 14 HOH HOH . M 4 HOH A 12 512 16 HOH HOH . M 4 HOH A 13 513 17 HOH HOH . M 4 HOH A 14 514 18 HOH HOH . M 4 HOH A 15 515 19 HOH HOH . M 4 HOH A 16 516 23 HOH HOH . M 4 HOH A 17 517 25 HOH HOH . M 4 HOH A 18 518 29 HOH HOH . M 4 HOH A 19 519 30 HOH HOH . M 4 HOH A 20 520 35 HOH HOH . M 4 HOH A 21 521 40 HOH HOH . M 4 HOH A 22 522 41 HOH HOH . M 4 HOH A 23 523 43 HOH HOH . M 4 HOH A 24 524 46 HOH HOH . M 4 HOH A 25 525 47 HOH HOH . M 4 HOH A 26 526 60 HOH HOH . M 4 HOH A 27 527 61 HOH HOH . M 4 HOH A 28 528 62 HOH HOH . M 4 HOH A 29 529 63 HOH HOH . M 4 HOH A 30 530 64 HOH HOH . M 4 HOH A 31 531 66 HOH HOH . M 4 HOH A 32 532 68 HOH HOH . M 4 HOH A 33 533 72 HOH HOH . M 4 HOH A 34 534 73 HOH HOH . M 4 HOH A 35 535 93 HOH HOH . M 4 HOH A 36 536 98 HOH HOH . M 4 HOH A 37 537 99 HOH HOH . M 4 HOH A 38 538 100 HOH HOH . M 4 HOH A 39 539 101 HOH HOH . M 4 HOH A 40 540 102 HOH HOH . N 4 HOH B 1 501 77 HOH HOH . N 4 HOH B 2 502 88 HOH HOH . N 4 HOH B 3 503 1 HOH HOH . N 4 HOH B 4 504 6 HOH HOH . N 4 HOH B 5 505 9 HOH HOH . N 4 HOH B 6 506 27 HOH HOH . N 4 HOH B 7 507 28 HOH HOH . N 4 HOH B 8 508 34 HOH HOH . N 4 HOH B 9 509 38 HOH HOH . N 4 HOH B 10 510 44 HOH HOH . N 4 HOH B 11 511 45 HOH HOH . N 4 HOH B 12 512 48 HOH HOH . N 4 HOH B 13 513 49 HOH HOH . N 4 HOH B 14 514 50 HOH HOH . N 4 HOH B 15 515 52 HOH HOH . N 4 HOH B 16 516 53 HOH HOH . N 4 HOH B 17 517 54 HOH HOH . N 4 HOH B 18 518 56 HOH HOH . N 4 HOH B 19 519 59 HOH HOH . N 4 HOH B 20 520 71 HOH HOH . N 4 HOH B 21 521 74 HOH HOH . N 4 HOH B 22 522 80 HOH HOH . N 4 HOH B 23 523 87 HOH HOH . N 4 HOH B 24 524 91 HOH HOH . N 4 HOH B 25 525 94 HOH HOH . N 4 HOH B 26 526 97 HOH HOH . O 4 HOH C 1 501 11 HOH HOH . O 4 HOH C 2 502 12 HOH HOH . O 4 HOH C 3 503 13 HOH HOH . O 4 HOH C 4 504 20 HOH HOH . O 4 HOH C 5 505 21 HOH HOH . O 4 HOH C 6 506 22 HOH HOH . O 4 HOH C 7 507 24 HOH HOH . O 4 HOH C 8 508 31 HOH HOH . O 4 HOH C 9 509 32 HOH HOH . O 4 HOH C 10 510 33 HOH HOH . O 4 HOH C 11 511 36 HOH HOH . O 4 HOH C 12 512 39 HOH HOH . O 4 HOH C 13 513 51 HOH HOH . O 4 HOH C 14 514 69 HOH HOH . O 4 HOH C 15 515 75 HOH HOH . O 4 HOH C 16 516 76 HOH HOH . O 4 HOH C 17 517 78 HOH HOH . O 4 HOH C 18 518 81 HOH HOH . O 4 HOH C 19 519 82 HOH HOH . O 4 HOH C 20 520 85 HOH HOH . O 4 HOH C 21 521 92 HOH HOH . P 4 HOH D 1 501 15 HOH HOH . P 4 HOH D 2 502 26 HOH HOH . P 4 HOH D 3 503 37 HOH HOH . P 4 HOH D 4 504 42 HOH HOH . P 4 HOH D 5 505 57 HOH HOH . P 4 HOH D 6 506 58 HOH HOH . P 4 HOH D 7 507 65 HOH HOH . P 4 HOH D 8 508 67 HOH HOH . P 4 HOH D 9 509 79 HOH HOH . P 4 HOH D 10 510 83 HOH HOH . P 4 HOH D 11 511 84 HOH HOH . P 4 HOH D 12 512 86 HOH HOH . P 4 HOH D 13 513 89 HOH HOH . P 4 HOH D 14 514 95 HOH HOH . P 4 HOH D 15 515 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . E 2 30.596 -24.697 -17.849 1 30.5 ? C1 LMR 401 A 1 HETATM 2 O O1A LMR . . . E 2 29.552 -24.089 -18.168 1 30.99 ? O1A LMR 401 A 1 HETATM 3 O O1B LMR . . . E 2 30.683 -25.903 -17.525 1 29.85 ? O1B LMR 401 A 1 HETATM 4 C C2 LMR . . . E 2 31.875 -23.873 -17.83 1 30.73 ? C2 LMR 401 A 1 HETATM 5 O O2 LMR . . . E 2 33.028 -24.709 -17.685 1 30.26 ? O2 LMR 401 A 1 HETATM 6 C C3 LMR . . . E 2 32.01 -22.978 -19.079 1 30.63 ? C3 LMR 401 A 1 HETATM 7 C C4 LMR . . . E 2 32.173 -23.825 -20.336 1 30.71 ? C4 LMR 401 A 1 HETATM 8 O O4A LMR . . . E 2 31.676 -24.971 -20.323 1 30.12 ? O4A LMR 401 A 1 HETATM 9 O O4B LMR . . . E 2 32.783 -23.301 -21.292 1 30.27 ? O4B LMR 401 A 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 584 _model_server_stats.encode_time_ms 55 _model_server_stats.element_count 9 #