data_4WLU # _model_server_result.job_id OSseLvBUPrrljLI5vOf6jQ _model_server_result.datetime_utc '2025-08-31 19:52:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 4WLU # _exptl.entry_id 4WLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WLU _cell.length_a 59.982 _cell.length_b 152.14 _cell.length_c 155.035 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 251 n n PA O2A NAD sing 252 n n PA O5B NAD sing 253 n n PA O3 NAD sing 254 n n O2A HOA2 NAD sing 255 n n O5B C5B NAD sing 256 n n C5B C4B NAD sing 257 n n C5B H51A NAD sing 258 n n C5B H52A NAD sing 259 n n C4B O4B NAD sing 260 n n C4B C3B NAD sing 261 n n C4B H4B NAD sing 262 n n O4B C1B NAD sing 263 n n C3B O3B NAD sing 264 n n C3B C2B NAD sing 265 n n C3B H3B NAD sing 266 n n O3B HO3A NAD sing 267 n n C2B O2B NAD sing 268 n n C2B C1B NAD sing 269 n n C2B H2B NAD sing 270 n n O2B HO2A NAD sing 271 n n C1B N9A NAD sing 272 n n C1B H1B NAD sing 273 n n N9A C8A NAD sing 274 n y N9A C4A NAD sing 275 n y C8A N7A NAD doub 276 n y C8A H8A NAD sing 277 n n N7A C5A NAD sing 278 n y C5A C6A NAD sing 279 n y C5A C4A NAD doub 280 n y C6A N6A NAD sing 281 n n C6A N1A NAD doub 282 n y N6A H61A NAD sing 283 n n N6A H62A NAD sing 284 n n N1A C2A NAD sing 285 n y C2A N3A NAD doub 286 n y C2A H2A NAD sing 287 n n N3A C4A NAD sing 288 n y O3 PN NAD sing 289 n n PN O1N NAD doub 290 n n PN O2N NAD sing 291 n n PN O5D NAD sing 292 n n O5D C5D NAD sing 293 n n C5D C4D NAD sing 294 n n C5D H51N NAD sing 295 n n C5D H52N NAD sing 296 n n C4D O4D NAD sing 297 n n C4D C3D NAD sing 298 n n C4D H4D NAD sing 299 n n O4D C1D NAD sing 300 n n C3D O3D NAD sing 301 n n C3D C2D NAD sing 302 n n C3D H3D NAD sing 303 n n O3D HO3N NAD sing 304 n n C2D O2D NAD sing 305 n n C2D C1D NAD sing 306 n n C2D H2D NAD sing 307 n n O2D HO2N NAD sing 308 n n C1D N1N NAD sing 309 n n C1D H1D NAD sing 310 n n N1N C2N NAD sing 311 n y N1N C6N NAD doub 312 n y C2N C3N NAD doub 313 n y C2N H2N NAD sing 314 n n C3N C7N NAD sing 315 n n C3N C4N NAD sing 316 n y C7N O7N NAD doub 317 n n C7N N7N NAD sing 318 n n N7N H71N NAD sing 319 n n N7N H72N NAD sing 320 n n C4N C5N NAD doub 321 n y C4N H4N NAD sing 322 n n C5N C6N NAD sing 323 n y C5N H5N NAD sing 324 n n C6N H6N NAD sing 325 n n # _atom_sites.entry_id 4WLU _atom_sites.fract_transf_matrix[1][1] 0.016672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LMR A 1 401 1 LMR LMR . F 3 NAD A 1 402 1 NAD NAD . G 2 LMR B 1 401 2 LMR LMR . H 3 NAD B 1 402 2 NAD NAD . I 2 LMR C 1 401 3 LMR LMR . J 3 NAD C 1 402 3 NAD NAD . K 2 LMR D 1 401 4 LMR LMR . L 3 NAD D 1 402 4 NAD NAD . M 4 HOH A 1 501 90 HOH HOH . M 4 HOH A 2 502 55 HOH HOH . M 4 HOH A 3 503 70 HOH HOH . M 4 HOH A 4 504 4 HOH HOH . M 4 HOH A 5 505 2 HOH HOH . M 4 HOH A 6 506 3 HOH HOH . M 4 HOH A 7 507 5 HOH HOH . M 4 HOH A 8 508 7 HOH HOH . M 4 HOH A 9 509 8 HOH HOH . M 4 HOH A 10 510 10 HOH HOH . M 4 HOH A 11 511 14 HOH HOH . M 4 HOH A 12 512 16 HOH HOH . M 4 HOH A 13 513 17 HOH HOH . M 4 HOH A 14 514 18 HOH HOH . M 4 HOH A 15 515 19 HOH HOH . M 4 HOH A 16 516 23 HOH HOH . M 4 HOH A 17 517 25 HOH HOH . M 4 HOH A 18 518 29 HOH HOH . M 4 HOH A 19 519 30 HOH HOH . M 4 HOH A 20 520 35 HOH HOH . M 4 HOH A 21 521 40 HOH HOH . M 4 HOH A 22 522 41 HOH HOH . M 4 HOH A 23 523 43 HOH HOH . M 4 HOH A 24 524 46 HOH HOH . M 4 HOH A 25 525 47 HOH HOH . M 4 HOH A 26 526 60 HOH HOH . M 4 HOH A 27 527 61 HOH HOH . M 4 HOH A 28 528 62 HOH HOH . M 4 HOH A 29 529 63 HOH HOH . M 4 HOH A 30 530 64 HOH HOH . M 4 HOH A 31 531 66 HOH HOH . M 4 HOH A 32 532 68 HOH HOH . M 4 HOH A 33 533 72 HOH HOH . M 4 HOH A 34 534 73 HOH HOH . M 4 HOH A 35 535 93 HOH HOH . M 4 HOH A 36 536 98 HOH HOH . M 4 HOH A 37 537 99 HOH HOH . M 4 HOH A 38 538 100 HOH HOH . M 4 HOH A 39 539 101 HOH HOH . M 4 HOH A 40 540 102 HOH HOH . N 4 HOH B 1 501 77 HOH HOH . N 4 HOH B 2 502 88 HOH HOH . N 4 HOH B 3 503 1 HOH HOH . N 4 HOH B 4 504 6 HOH HOH . N 4 HOH B 5 505 9 HOH HOH . N 4 HOH B 6 506 27 HOH HOH . N 4 HOH B 7 507 28 HOH HOH . N 4 HOH B 8 508 34 HOH HOH . N 4 HOH B 9 509 38 HOH HOH . N 4 HOH B 10 510 44 HOH HOH . N 4 HOH B 11 511 45 HOH HOH . N 4 HOH B 12 512 48 HOH HOH . N 4 HOH B 13 513 49 HOH HOH . N 4 HOH B 14 514 50 HOH HOH . N 4 HOH B 15 515 52 HOH HOH . N 4 HOH B 16 516 53 HOH HOH . N 4 HOH B 17 517 54 HOH HOH . N 4 HOH B 18 518 56 HOH HOH . N 4 HOH B 19 519 59 HOH HOH . N 4 HOH B 20 520 71 HOH HOH . N 4 HOH B 21 521 74 HOH HOH . N 4 HOH B 22 522 80 HOH HOH . N 4 HOH B 23 523 87 HOH HOH . N 4 HOH B 24 524 91 HOH HOH . N 4 HOH B 25 525 94 HOH HOH . N 4 HOH B 26 526 97 HOH HOH . O 4 HOH C 1 501 11 HOH HOH . O 4 HOH C 2 502 12 HOH HOH . O 4 HOH C 3 503 13 HOH HOH . O 4 HOH C 4 504 20 HOH HOH . O 4 HOH C 5 505 21 HOH HOH . O 4 HOH C 6 506 22 HOH HOH . O 4 HOH C 7 507 24 HOH HOH . O 4 HOH C 8 508 31 HOH HOH . O 4 HOH C 9 509 32 HOH HOH . O 4 HOH C 10 510 33 HOH HOH . O 4 HOH C 11 511 36 HOH HOH . O 4 HOH C 12 512 39 HOH HOH . O 4 HOH C 13 513 51 HOH HOH . O 4 HOH C 14 514 69 HOH HOH . O 4 HOH C 15 515 75 HOH HOH . O 4 HOH C 16 516 76 HOH HOH . O 4 HOH C 17 517 78 HOH HOH . O 4 HOH C 18 518 81 HOH HOH . O 4 HOH C 19 519 82 HOH HOH . O 4 HOH C 20 520 85 HOH HOH . O 4 HOH C 21 521 92 HOH HOH . P 4 HOH D 1 501 15 HOH HOH . P 4 HOH D 2 502 26 HOH HOH . P 4 HOH D 3 503 37 HOH HOH . P 4 HOH D 4 504 42 HOH HOH . P 4 HOH D 5 505 57 HOH HOH . P 4 HOH D 6 506 58 HOH HOH . P 4 HOH D 7 507 65 HOH HOH . P 4 HOH D 8 508 67 HOH HOH . P 4 HOH D 9 509 79 HOH HOH . P 4 HOH D 10 510 83 HOH HOH . P 4 HOH D 11 511 84 HOH HOH . P 4 HOH D 12 512 86 HOH HOH . P 4 HOH D 13 513 89 HOH HOH . P 4 HOH D 14 514 95 HOH HOH . P 4 HOH D 15 515 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . L 3 30.852 4.275 -31.857 1 29.38 ? PA NAD 402 D 1 HETATM 2 O O1A NAD . . . L 3 30.382 4.148 -30.457 1 29.39 ? O1A NAD 402 D 1 HETATM 3 O O2A NAD . . . L 3 30.984 3.063 -32.695 1 28.44 ? O2A NAD 402 D 1 HETATM 4 O O5B NAD . . . L 3 32.234 5.074 -31.852 1 30.03 ? O5B NAD 402 D 1 HETATM 5 C C5B NAD . . . L 3 32.486 5.83 -30.7 1 31.57 ? C5B NAD 402 D 1 HETATM 6 C C4B NAD . . . L 3 33.987 6.062 -30.654 1 31.95 ? C4B NAD 402 D 1 HETATM 7 O O4B NAD . . . L 3 34.241 7.36 -30.04 1 32.25 ? O4B NAD 402 D 1 HETATM 8 C C3B NAD . . . L 3 34.591 4.991 -29.74 1 32.24 ? C3B NAD 402 D 1 HETATM 9 O O3B NAD . . . L 3 35.826 4.502 -30.28 1 32.6 ? O3B NAD 402 D 1 HETATM 10 C C2B NAD . . . L 3 34.779 5.752 -28.45 1 32.3 ? C2B NAD 402 D 1 HETATM 11 O O2B NAD . . . L 3 35.837 5.184 -27.684 1 31.56 ? O2B NAD 402 D 1 HETATM 12 C C1B NAD . . . L 3 35.167 7.127 -28.966 1 32.84 ? C1B NAD 402 D 1 HETATM 13 N N9A NAD . . . L 3 35.061 8.16 -27.894 1 33.68 ? N9A NAD 402 D 1 HETATM 14 C C8A NAD . . . L 3 34.07 8.414 -27.041 1 34.33 ? C8A NAD 402 D 1 HETATM 15 N N7A NAD . . . L 3 34.451 9.429 -26.261 1 34.53 ? N7A NAD 402 D 1 HETATM 16 C C5A NAD . . . L 3 35.676 9.802 -26.626 1 34.27 ? C5A NAD 402 D 1 HETATM 17 C C6A NAD . . . L 3 36.502 10.754 -26.174 1 34.9 ? C6A NAD 402 D 1 HETATM 18 N N6A NAD . . . L 3 36.075 11.509 -25.165 1 34.98 ? N6A NAD 402 D 1 HETATM 19 N N1A NAD . . . L 3 37.715 10.949 -26.705 1 36.02 ? N1A NAD 402 D 1 HETATM 20 C C2A NAD . . . L 3 38.121 10.129 -27.76 1 36.21 ? C2A NAD 402 D 1 HETATM 21 N N3A NAD . . . L 3 37.247 9.147 -28.212 1 35.93 ? N3A NAD 402 D 1 HETATM 22 C C4A NAD . . . L 3 36.046 9.009 -27.633 1 34.6 ? C4A NAD 402 D 1 HETATM 23 O O3 NAD . . . L 3 29.902 5.346 -32.592 1 29.44 ? O3 NAD 402 D 1 HETATM 24 P PN NAD . . . L 3 29.991 5.642 -34.184 1 28.73 ? PN NAD 402 D 1 HETATM 25 O O1N NAD . . . L 3 28.948 4.851 -34.856 1 27.86 ? O1N NAD 402 D 1 HETATM 26 O O2N NAD . . . L 3 31.403 5.502 -34.613 1 27.82 ? O2N NAD 402 D 1 HETATM 27 O O5D NAD . . . L 3 29.513 7.2 -34.218 1 29.94 ? O5D NAD 402 D 1 HETATM 28 C C5D NAD . . . L 3 30.291 8.217 -33.577 1 31.92 ? C5D NAD 402 D 1 HETATM 29 C C4D NAD . . . L 3 29.512 9.518 -33.723 1 33.86 ? C4D NAD 402 D 1 HETATM 30 O O4D NAD . . . L 3 29.326 9.846 -35.122 1 35.74 ? O4D NAD 402 D 1 HETATM 31 C C3D NAD . . . L 3 28.093 9.422 -33.122 1 34.46 ? C3D NAD 402 D 1 HETATM 32 O O3D NAD . . . L 3 27.82 10.632 -32.406 1 34.35 ? O3D NAD 402 D 1 HETATM 33 C C2D NAD . . . L 3 27.211 9.358 -34.33 1 36.06 ? C2D NAD 402 D 1 HETATM 34 O O2D NAD . . . L 3 25.9 9.875 -34.061 1 36.55 ? O2D NAD 402 D 1 HETATM 35 C C1D NAD . . . L 3 27.979 10.311 -35.227 1 37.75 ? C1D NAD 402 D 1 HETATM 36 N N1N NAD . . . L 3 27.668 10.222 -36.656 1 42.09 ? N1N NAD 402 D 1 HETATM 37 C C2N NAD . . . L 3 27.62 11.404 -37.425 1 45.24 ? C2N NAD 402 D 1 HETATM 38 C C3N NAD . . . L 3 27.347 11.354 -38.79 1 46.62 ? C3N NAD 402 D 1 HETATM 39 C C7N NAD . . . L 3 27.29 12.503 -39.583 1 48.41 ? C7N NAD 402 D 1 HETATM 40 O O7N NAD . . . L 3 26.369 12.516 -40.583 1 50 ? O7N NAD 402 D 1 HETATM 41 N N7N NAD . . . L 3 28.192 13.471 -39.347 1 47.81 ? N7N NAD 402 D 1 HETATM 42 C C4N NAD . . . L 3 27.138 10.111 -39.373 1 46.89 ? C4N NAD 402 D 1 HETATM 43 C C5N NAD . . . L 3 27.192 8.935 -38.625 1 46.13 ? C5N NAD 402 D 1 HETATM 44 C C6N NAD . . . L 3 27.455 8.985 -37.265 1 44.27 ? C6N NAD 402 D 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #