data_4WLV # _model_server_result.job_id DcRZ0erLwfOsEVbvAncxpw _model_server_result.datetime_utc '2024-10-13 19:15:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wlv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4WLV # _exptl.entry_id 4WLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WLV _cell.length_a 59.864 _cell.length_b 152.016 _cell.length_c 155.669 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4WLV _atom_sites.fract_transf_matrix[1][1] 0.016705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 4 NAD NAD . F 3 PO4 A 1 402 3 PO4 PO4 . G 3 PO4 A 1 403 4 PO4 PO4 . H 2 NAD B 1 401 1 NAD NAD . I 3 PO4 B 1 402 1 PO4 PO4 . J 3 PO4 B 1 403 2 PO4 PO4 . K 2 NAD C 1 401 3 NAD NAD . L 3 PO4 C 1 402 7 PO4 PO4 . M 3 PO4 C 1 403 8 PO4 PO4 . N 2 NAD D 1 401 2 NAD NAD . O 3 PO4 D 1 402 5 PO4 PO4 . P 3 PO4 D 1 403 6 PO4 PO4 . Q 4 HOH A 1 501 10 HOH HOH . Q 4 HOH A 2 502 47 HOH HOH . Q 4 HOH A 3 503 3 HOH HOH . Q 4 HOH A 4 504 4 HOH HOH . Q 4 HOH A 5 505 6 HOH HOH . Q 4 HOH A 6 506 11 HOH HOH . Q 4 HOH A 7 507 12 HOH HOH . Q 4 HOH A 8 508 13 HOH HOH . Q 4 HOH A 9 509 15 HOH HOH . Q 4 HOH A 10 510 16 HOH HOH . Q 4 HOH A 11 511 17 HOH HOH . Q 4 HOH A 12 512 18 HOH HOH . Q 4 HOH A 13 513 23 HOH HOH . Q 4 HOH A 14 514 25 HOH HOH . Q 4 HOH A 15 515 26 HOH HOH . Q 4 HOH A 16 516 30 HOH HOH . Q 4 HOH A 17 517 32 HOH HOH . Q 4 HOH A 18 518 33 HOH HOH . Q 4 HOH A 19 519 36 HOH HOH . Q 4 HOH A 20 520 38 HOH HOH . Q 4 HOH A 21 521 39 HOH HOH . R 4 HOH B 1 501 1 HOH HOH . R 4 HOH B 2 502 2 HOH HOH . R 4 HOH B 3 503 8 HOH HOH . R 4 HOH B 4 504 9 HOH HOH . R 4 HOH B 5 505 21 HOH HOH . R 4 HOH B 6 506 22 HOH HOH . R 4 HOH B 7 507 24 HOH HOH . R 4 HOH B 8 508 29 HOH HOH . R 4 HOH B 9 509 31 HOH HOH . R 4 HOH B 10 510 37 HOH HOH . R 4 HOH B 11 511 49 HOH HOH . S 4 HOH C 1 501 48 HOH HOH . S 4 HOH C 2 502 7 HOH HOH . S 4 HOH C 3 503 19 HOH HOH . S 4 HOH C 4 504 20 HOH HOH . S 4 HOH C 5 505 40 HOH HOH . S 4 HOH C 6 506 41 HOH HOH . S 4 HOH C 7 507 42 HOH HOH . S 4 HOH C 8 508 43 HOH HOH . S 4 HOH C 9 509 44 HOH HOH . S 4 HOH C 10 510 45 HOH HOH . S 4 HOH C 11 511 46 HOH HOH . T 4 HOH D 1 501 5 HOH HOH . T 4 HOH D 2 502 14 HOH HOH . T 4 HOH D 3 503 27 HOH HOH . T 4 HOH D 4 504 28 HOH HOH . T 4 HOH D 5 505 34 HOH HOH . T 4 HOH D 6 506 35 HOH HOH . T 4 HOH D 7 507 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 -33.817 -12.754 19.696 1 34.28 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . E 2 -34.544 -12.498 20.957 1 35.74 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . E 2 -32.425 -12.3 19.555 1 35.22 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . E 2 -34.657 -12.133 18.485 1 35.34 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . E 2 -35.974 -12.561 18.277 1 35.5 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . E 2 -36.652 -11.505 17.408 1 35.53 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . E 2 -38.047 -11.868 17.349 1 36.25 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . E 2 -36.611 -10.116 18.049 1 36.08 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . E 2 -36.058 -9.176 17.12 1 36.28 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . E 2 -38.076 -9.791 18.299 1 36.5 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . E 2 -38.348 -8.379 18.112 1 35.23 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . E 2 -38.723 -10.622 17.209 1 36.47 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . E 2 -40.187 -10.784 17.408 1 36.74 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . E 2 -40.848 -11.23 18.477 1 36.5 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . E 2 -42.146 -11.194 18.181 1 36.98 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . E 2 -42.288 -10.729 16.939 1 35.93 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . E 2 -43.373 -10.503 16.187 1 37.1 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . E 2 -44.557 -10.783 16.732 1 37.95 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . E 2 -43.284 -10.018 14.936 1 36.74 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . E 2 -42.009 -9.747 14.411 1 36.46 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . E 2 -40.89 -9.988 15.219 1 35.38 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . E 2 -41.067 -10.474 16.462 1 35.79 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . E 2 -33.87 -14.325 19.388 1 36.5 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . E 2 -33.088 -14.972 18.119 1 37.03 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . E 2 -31.96 -15.763 18.637 1 35.46 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . E 2 -32.859 -13.946 17.075 1 37.78 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . E 2 -34.218 -15.933 17.562 1 39.76 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . E 2 -34.279 -17.209 18.14 1 40.76 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . E 2 -35.54 -17.81 17.605 1 40.82 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . E 2 -35.146 -18.761 16.59 1 40.69 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . E 2 -36.127 -18.622 18.726 1 40.72 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . E 2 -37.442 -19.036 18.393 1 40.36 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . E 2 -35.169 -19.783 18.748 1 41.69 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . E 2 -35.723 -20.857 19.504 1 43.58 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . E 2 -35.078 -20.074 17.235 1 41.46 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . E 2 -33.839 -20.763 16.794 1 42.16 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . E 2 -33.928 -21.82 15.867 1 42.1 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . E 2 -32.783 -22.491 15.421 1 41.14 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . E 2 -32.865 -23.543 14.506 1 39.39 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . E 2 -31.801 -24.391 14.49 1 40.41 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . E 2 -33.946 -23.617 13.697 1 36.21 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . E 2 -31.532 -22.101 15.904 1 42.12 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . E 2 -31.422 -21.055 16.815 1 43.05 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . E 2 -32.564 -20.384 17.262 1 43.87 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 449 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #