data_4WLV
#
_model_server_result.job_id            HByusBY6aduZ2CixJr3MPA 
_model_server_result.datetime_utc      '2024-10-13 19:22:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wlv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    4WLV 
#
_exptl.entry_id    4WLV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WLV 
_cell.length_a            59.864 
_cell.length_b            152.016 
_cell.length_c            155.669 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WLV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     4WLV 
_atom_sites.fract_transf_matrix[1][1]    0.016705 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006578 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 401 4 NAD NAD . 
F 3 PO4 A 1 402 3 PO4 PO4 . 
G 3 PO4 A 1 403 4 PO4 PO4 . 
H 2 NAD B 1 401 1 NAD NAD . 
I 3 PO4 B 1 402 1 PO4 PO4 . 
J 3 PO4 B 1 403 2 PO4 PO4 . 
K 2 NAD C 1 401 3 NAD NAD . 
L 3 PO4 C 1 402 7 PO4 PO4 . 
M 3 PO4 C 1 403 8 PO4 PO4 . 
N 2 NAD D 1 401 2 NAD NAD . 
O 3 PO4 D 1 402 5 PO4 PO4 . 
P 3 PO4 D 1 403 6 PO4 PO4 . 
Q 4 HOH A 1 501 10 HOH HOH . 
Q 4 HOH A 2 502 47 HOH HOH . 
Q 4 HOH A 3 503 3 HOH HOH . 
Q 4 HOH A 4 504 4 HOH HOH . 
Q 4 HOH A 5 505 6 HOH HOH . 
Q 4 HOH A 6 506 11 HOH HOH . 
Q 4 HOH A 7 507 12 HOH HOH . 
Q 4 HOH A 8 508 13 HOH HOH . 
Q 4 HOH A 9 509 15 HOH HOH . 
Q 4 HOH A 10 510 16 HOH HOH . 
Q 4 HOH A 11 511 17 HOH HOH . 
Q 4 HOH A 12 512 18 HOH HOH . 
Q 4 HOH A 13 513 23 HOH HOH . 
Q 4 HOH A 14 514 25 HOH HOH . 
Q 4 HOH A 15 515 26 HOH HOH . 
Q 4 HOH A 16 516 30 HOH HOH . 
Q 4 HOH A 17 517 32 HOH HOH . 
Q 4 HOH A 18 518 33 HOH HOH . 
Q 4 HOH A 19 519 36 HOH HOH . 
Q 4 HOH A 20 520 38 HOH HOH . 
Q 4 HOH A 21 521 39 HOH HOH . 
R 4 HOH B 1 501 1 HOH HOH . 
R 4 HOH B 2 502 2 HOH HOH . 
R 4 HOH B 3 503 8 HOH HOH . 
R 4 HOH B 4 504 9 HOH HOH . 
R 4 HOH B 5 505 21 HOH HOH . 
R 4 HOH B 6 506 22 HOH HOH . 
R 4 HOH B 7 507 24 HOH HOH . 
R 4 HOH B 8 508 29 HOH HOH . 
R 4 HOH B 9 509 31 HOH HOH . 
R 4 HOH B 10 510 37 HOH HOH . 
R 4 HOH B 11 511 49 HOH HOH . 
S 4 HOH C 1 501 48 HOH HOH . 
S 4 HOH C 2 502 7 HOH HOH . 
S 4 HOH C 3 503 19 HOH HOH . 
S 4 HOH C 4 504 20 HOH HOH . 
S 4 HOH C 5 505 40 HOH HOH . 
S 4 HOH C 6 506 41 HOH HOH . 
S 4 HOH C 7 507 42 HOH HOH . 
S 4 HOH C 8 508 43 HOH HOH . 
S 4 HOH C 9 509 44 HOH HOH . 
S 4 HOH C 10 510 45 HOH HOH . 
S 4 HOH C 11 511 46 HOH HOH . 
T 4 HOH D 1 501 5 HOH HOH . 
T 4 HOH D 2 502 14 HOH HOH . 
T 4 HOH D 3 503 27 HOH HOH . 
T 4 HOH D 4 504 28 HOH HOH . 
T 4 HOH D 5 505 34 HOH HOH . 
T 4 HOH D 6 506 35 HOH HOH . 
T 4 HOH D 7 507 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . H 2 -20.728 -2.368 21.01 1 33.92 ? PA NAD 401 B 1 
HETATM 2 O O1A NAD . . . H 2 -20.924 -1.716 22.313 1 34.47 ? O1A NAD 401 B 1 
HETATM 3 O O2A NAD . . . H 2 -21.86 -3.048 20.348 1 33.75 ? O2A NAD 401 B 1 
HETATM 4 O O5B NAD . . . H 2 -19.578 -3.45 21.23 1 33.88 ? O5B NAD 401 B 1 
HETATM 5 C C5B NAD . . . H 2 -18.379 -3.041 21.823 1 35.32 ? C5B NAD 401 B 1 
HETATM 6 C C4B NAD . . . H 2 -17.662 -4.296 22.317 1 35.78 ? C4B NAD 401 B 1 
HETATM 7 O O4B NAD . . . H 2 -16.375 -3.839 22.812 1 37.8 ? O4B NAD 401 B 1 
HETATM 8 C C3B NAD . . . H 2 -18.379 -4.943 23.506 1 36.56 ? C3B NAD 401 B 1 
HETATM 9 O O3B NAD . . . H 2 -18.489 -6.368 23.29 1 34.96 ? O3B NAD 401 B 1 
HETATM 10 C C2B NAD . . . H 2 -17.449 -4.653 24.686 1 37.64 ? C2B NAD 401 B 1 
HETATM 11 O O2B NAD . . . H 2 -17.444 -5.718 25.654 1 36.14 ? O2B NAD 401 B 1 
HETATM 12 C C1B NAD . . . H 2 -16.103 -4.613 23.997 1 39.06 ? C1B NAD 401 B 1 
HETATM 13 N N9A NAD . . . H 2 -15.048 -4.021 24.879 1 41.37 ? N9A NAD 401 B 1 
HETATM 14 C C8A NAD . . . H 2 -15.076 -2.88 25.566 1 42.34 ? C8A NAD 401 B 1 
HETATM 15 N N7A NAD . . . H 2 -13.919 -2.766 26.216 1 43.24 ? N7A NAD 401 B 1 
HETATM 16 C C5A NAD . . . H 2 -13.173 -3.83 25.933 1 43.23 ? C5A NAD 401 B 1 
HETATM 17 C C6A NAD . . . H 2 -11.947 -4.19 26.326 1 44.44 ? C6A NAD 401 B 1 
HETATM 18 N N6A NAD . . . H 2 -11.314 -3.361 27.148 1 45.75 ? N6A NAD 401 B 1 
HETATM 19 N N1A NAD . . . H 2 -11.37 -5.324 25.915 1 43.85 ? N1A NAD 401 B 1 
HETATM 20 C C2A NAD . . . H 2 -12.087 -6.153 25.052 1 45.23 ? C2A NAD 401 B 1 
HETATM 21 N N3A NAD . . . H 2 -13.368 -5.76 24.655 1 44.15 ? N3A NAD 401 B 1 
HETATM 22 C C4A NAD . . . H 2 -13.877 -4.605 25.106 1 42.68 ? C4A NAD 401 B 1 
HETATM 23 O O3 NAD . . . H 2 -20.11 -1.255 20.021 1 33.58 ? O3 NAD 401 B 1 
HETATM 24 P PN NAD . . . H 2 -19.929 -1.468 18.427 1 32.16 ? PN NAD 401 B 1 
HETATM 25 O O1N NAD . . . H 2 -21.154 -1.025 17.752 1 32.59 ? O1N NAD 401 B 1 
HETATM 26 O O2N NAD . . . H 2 -19.411 -2.846 18.245 1 31.97 ? O2N NAD 401 B 1 
HETATM 27 O O5D NAD . . . H 2 -18.762 -0.416 18.048 1 33.24 ? O5D NAD 401 B 1 
HETATM 28 C C5D NAD . . . H 2 -17.531 -0.486 18.778 1 34.22 ? C5D NAD 401 B 1 
HETATM 29 C C4D NAD . . . H 2 -16.602 0.511 18.119 1 35.28 ? C4D NAD 401 B 1 
HETATM 30 O O4D NAD . . . H 2 -16.698 0.607 16.663 1 35.42 ? O4D NAD 401 B 1 
HETATM 31 C C3D NAD . . . H 2 -16.983 1.915 18.644 1 35.04 ? C3D NAD 401 B 1 
HETATM 32 O O3D NAD . . . H 2 -15.829 2.534 19.234 1 35.49 ? O3D NAD 401 B 1 
HETATM 33 C C2D NAD . . . H 2 -17.428 2.655 17.412 1 34.88 ? C2D NAD 401 B 1 
HETATM 34 O O2D NAD . . . H 2 -17.128 4.028 17.54 1 35.7 ? O2D NAD 401 B 1 
HETATM 35 C C1D NAD . . . H 2 -16.571 2.002 16.344 1 34.27 ? C1D NAD 401 B 1 
HETATM 36 N N1N NAD . . . H 2 -17.044 2.211 14.946 1 34.16 ? N1N NAD 401 B 1 
HETATM 37 C C2N NAD . . . H 2 -16.112 2.546 13.943 1 32.91 ? C2N NAD 401 B 1 
HETATM 38 C C3N NAD . . . H 2 -16.507 2.744 12.618 1 32.85 ? C3N NAD 401 B 1 
HETATM 39 C C7N NAD . . . H 2 -15.572 3.075 11.624 1 32 ? C7N NAD 401 B 1 
HETATM 40 O O7N NAD . . . H 2 -16.039 3.655 10.497 1 32.08 ? O7N NAD 401 B 1 
HETATM 41 N N7N NAD . . . H 2 -14.289 2.741 11.827 1 31.47 ? N7N NAD 401 B 1 
HETATM 42 C C4N NAD . . . H 2 -17.856 2.592 12.293 1 33.37 ? C4N NAD 401 B 1 
HETATM 43 C C5N NAD . . . H 2 -18.788 2.255 13.268 1 33.67 ? C5N NAD 401 B 1 
HETATM 44 C C6N NAD . . . H 2 -18.395 2.058 14.591 1 33.84 ? C6N NAD 401 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#