data_4WLV # _model_server_result.job_id 2SZkHnk-AkEjpoLNc671iA _model_server_result.datetime_utc '2024-10-13 19:19:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wlv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 4WLV # _exptl.entry_id 4WLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WLV _cell.length_a 59.864 _cell.length_b 152.016 _cell.length_c 155.669 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4WLV _atom_sites.fract_transf_matrix[1][1] 0.016705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 4 NAD NAD . F 3 PO4 A 1 402 3 PO4 PO4 . G 3 PO4 A 1 403 4 PO4 PO4 . H 2 NAD B 1 401 1 NAD NAD . I 3 PO4 B 1 402 1 PO4 PO4 . J 3 PO4 B 1 403 2 PO4 PO4 . K 2 NAD C 1 401 3 NAD NAD . L 3 PO4 C 1 402 7 PO4 PO4 . M 3 PO4 C 1 403 8 PO4 PO4 . N 2 NAD D 1 401 2 NAD NAD . O 3 PO4 D 1 402 5 PO4 PO4 . P 3 PO4 D 1 403 6 PO4 PO4 . Q 4 HOH A 1 501 10 HOH HOH . Q 4 HOH A 2 502 47 HOH HOH . Q 4 HOH A 3 503 3 HOH HOH . Q 4 HOH A 4 504 4 HOH HOH . Q 4 HOH A 5 505 6 HOH HOH . Q 4 HOH A 6 506 11 HOH HOH . Q 4 HOH A 7 507 12 HOH HOH . Q 4 HOH A 8 508 13 HOH HOH . Q 4 HOH A 9 509 15 HOH HOH . Q 4 HOH A 10 510 16 HOH HOH . Q 4 HOH A 11 511 17 HOH HOH . Q 4 HOH A 12 512 18 HOH HOH . Q 4 HOH A 13 513 23 HOH HOH . Q 4 HOH A 14 514 25 HOH HOH . Q 4 HOH A 15 515 26 HOH HOH . Q 4 HOH A 16 516 30 HOH HOH . Q 4 HOH A 17 517 32 HOH HOH . Q 4 HOH A 18 518 33 HOH HOH . Q 4 HOH A 19 519 36 HOH HOH . Q 4 HOH A 20 520 38 HOH HOH . Q 4 HOH A 21 521 39 HOH HOH . R 4 HOH B 1 501 1 HOH HOH . R 4 HOH B 2 502 2 HOH HOH . R 4 HOH B 3 503 8 HOH HOH . R 4 HOH B 4 504 9 HOH HOH . R 4 HOH B 5 505 21 HOH HOH . R 4 HOH B 6 506 22 HOH HOH . R 4 HOH B 7 507 24 HOH HOH . R 4 HOH B 8 508 29 HOH HOH . R 4 HOH B 9 509 31 HOH HOH . R 4 HOH B 10 510 37 HOH HOH . R 4 HOH B 11 511 49 HOH HOH . S 4 HOH C 1 501 48 HOH HOH . S 4 HOH C 2 502 7 HOH HOH . S 4 HOH C 3 503 19 HOH HOH . S 4 HOH C 4 504 20 HOH HOH . S 4 HOH C 5 505 40 HOH HOH . S 4 HOH C 6 506 41 HOH HOH . S 4 HOH C 7 507 42 HOH HOH . S 4 HOH C 8 508 43 HOH HOH . S 4 HOH C 9 509 44 HOH HOH . S 4 HOH C 10 510 45 HOH HOH . S 4 HOH C 11 511 46 HOH HOH . T 4 HOH D 1 501 5 HOH HOH . T 4 HOH D 2 502 14 HOH HOH . T 4 HOH D 3 503 27 HOH HOH . T 4 HOH D 4 504 28 HOH HOH . T 4 HOH D 5 505 34 HOH HOH . T 4 HOH D 6 506 35 HOH HOH . T 4 HOH D 7 507 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . N 2 -30.728 4.264 32 1 31.95 ? PA NAD 401 D 1 HETATM 2 O O1A NAD . . . N 2 -30.174 4.116 30.629 1 32.64 ? O1A NAD 401 D 1 HETATM 3 O O2A NAD . . . N 2 -30.841 3.086 32.888 1 30.1 ? O2A NAD 401 D 1 HETATM 4 O O5B NAD . . . N 2 -32.183 4.902 31.849 1 32.06 ? O5B NAD 401 D 1 HETATM 5 C C5B NAD . . . N 2 -32.334 6.229 31.409 1 33.29 ? C5B NAD 401 D 1 HETATM 6 C C4B NAD . . . N 2 -33.774 6.352 30.889 1 34 ? C4B NAD 401 D 1 HETATM 7 O O4B NAD . . . N 2 -33.888 7.59 30.161 1 35.58 ? O4B NAD 401 D 1 HETATM 8 C C3B NAD . . . N 2 -34.124 5.247 29.878 1 35 ? C3B NAD 401 D 1 HETATM 9 O O3B NAD . . . N 2 -35.276 4.53 30.352 1 34.39 ? O3B NAD 401 D 1 HETATM 10 C C2B NAD . . . N 2 -34.444 6.008 28.603 1 35.38 ? C2B NAD 401 D 1 HETATM 11 O O2B NAD . . . N 2 -35.529 5.393 27.906 1 36.3 ? O2B NAD 401 D 1 HETATM 12 C C1B NAD . . . N 2 -34.88 7.344 29.156 1 35.37 ? C1B NAD 401 D 1 HETATM 13 N N9A NAD . . . N 2 -34.903 8.407 28.118 1 35.89 ? N9A NAD 401 D 1 HETATM 14 C C8A NAD . . . N 2 -33.961 8.755 27.247 1 36.55 ? C8A NAD 401 D 1 HETATM 15 N N7A NAD . . . N 2 -34.436 9.761 26.509 1 36.74 ? N7A NAD 401 D 1 HETATM 16 C C5A NAD . . . N 2 -35.67 10.04 26.921 1 36.55 ? C5A NAD 401 D 1 HETATM 17 C C6A NAD . . . N 2 -36.568 10.947 26.517 1 38.08 ? C6A NAD 401 D 1 HETATM 18 N N6A NAD . . . N 2 -36.218 11.755 25.515 1 39.23 ? N6A NAD 401 D 1 HETATM 19 N N1A NAD . . . N 2 -37.774 11.055 27.089 1 38.41 ? N1A NAD 401 D 1 HETATM 20 C C2A NAD . . . N 2 -38.091 10.174 28.134 1 38.27 ? C2A NAD 401 D 1 HETATM 21 N N3A NAD . . . N 2 -37.143 9.24 28.533 1 36.66 ? N3A NAD 401 D 1 HETATM 22 C C4A NAD . . . N 2 -35.955 9.197 27.916 1 36.7 ? C4A NAD 401 D 1 HETATM 23 O O3 NAD . . . N 2 -29.901 5.424 32.759 1 31.28 ? O3 NAD 401 D 1 HETATM 24 P PN NAD . . . N 2 -29.965 5.666 34.364 1 30.14 ? PN NAD 401 D 1 HETATM 25 O O1N NAD . . . N 2 -28.954 4.807 35.006 1 30.13 ? O1N NAD 401 D 1 HETATM 26 O O2N NAD . . . N 2 -31.383 5.566 34.792 1 29.79 ? O2N NAD 401 D 1 HETATM 27 O O5D NAD . . . N 2 -29.416 7.205 34.452 1 30.6 ? O5D NAD 401 D 1 HETATM 28 C C5D NAD . . . N 2 -30.265 8.268 34.014 1 31.72 ? C5D NAD 401 D 1 HETATM 29 C C4D NAD . . . N 2 -29.509 9.576 34.218 1 32.95 ? C4D NAD 401 D 1 HETATM 30 O O4D NAD . . . N 2 -29.227 9.823 35.621 1 33.59 ? O4D NAD 401 D 1 HETATM 31 C C3D NAD . . . N 2 -28.16 9.566 33.497 1 33.02 ? C3D NAD 401 D 1 HETATM 32 O O3D NAD . . . N 2 -28.059 10.764 32.737 1 32.19 ? O3D NAD 401 D 1 HETATM 33 C C2D NAD . . . N 2 -27.142 9.593 34.607 1 34.27 ? C2D NAD 401 D 1 HETATM 34 O O2D NAD . . . N 2 -25.982 10.322 34.183 1 34.14 ? O2D NAD 401 D 1 HETATM 35 C C1D NAD . . . N 2 -27.901 10.357 35.686 1 34.19 ? C1D NAD 401 D 1 HETATM 36 N N1N NAD . . . N 2 -27.431 10.138 37.083 1 35.16 ? N1N NAD 401 D 1 HETATM 37 C C2N NAD . . . N 2 -27.346 11.243 37.955 1 34.59 ? C2N NAD 401 D 1 HETATM 38 C C3N NAD . . . N 2 -26.923 11.093 39.275 1 35.06 ? C3N NAD 401 D 1 HETATM 39 C C7N NAD . . . N 2 -26.83 12.196 40.141 1 35.86 ? C7N NAD 401 D 1 HETATM 40 O O7N NAD . . . N 2 -26.001 12.076 41.213 1 36.97 ? O7N NAD 401 D 1 HETATM 41 N N7N NAD . . . N 2 -27.589 13.278 39.883 1 35.49 ? N7N NAD 401 D 1 HETATM 42 C C4N NAD . . . N 2 -26.593 9.817 39.728 1 35.53 ? C4N NAD 401 D 1 HETATM 43 C C5N NAD . . . N 2 -26.685 8.714 38.888 1 35.63 ? C5N NAD 401 D 1 HETATM 44 C C6N NAD . . . N 2 -27.106 8.863 37.567 1 35.37 ? C6N NAD 401 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #