data_4WM9 # _model_server_result.job_id B5UxJ0JH_M5V-9aRP8bfIw _model_server_result.datetime_utc '2024-11-24 20:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4WM9 # _exptl.entry_id 4WM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WM9 _cell.length_a 102.18 _cell.length_b 102.18 _cell.length_c 87.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 81 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.352 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 235 n n CAJ CAO NXL sing 236 n n CAJ N NXL sing 237 n n OAL SAR NXL sing 238 n n CAO CAH NXL sing 239 n n CAN N NXL sing 240 n n CAN OAC NXL doub 241 n n OAG SAR NXL doub 242 n n N CA NXL sing 243 n n SAR OAE NXL doub 244 n n SAR OAD NXL sing 245 n n O C NXL doub 246 n n CAH CB NXL sing 247 n n CA C NXL sing 248 n n CA CB NXL sing 249 n n C NAA NXL sing 250 n n NAK OAL NXL sing 251 n n CAN H1 NXL sing 252 n n CAJ H2 NXL sing 253 n n CAJ H3 NXL sing 254 n n CA H4 NXL sing 255 n n NAA H5 NXL sing 256 n n NAA H6 NXL sing 257 n n CB H7 NXL sing 258 n n CB H8 NXL sing 259 n n CAH H9 NXL sing 260 n n CAH H10 NXL sing 261 n n CAO H11 NXL sing 262 n n NAK H12 NXL sing 263 n n OAD H13 NXL sing 264 n n # _atom_sites.entry_id 4WM9 _atom_sites.fract_transf_matrix[1][1] 0.009787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 301 1 NXL NXL . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 1 EDO EDO . G 4 EDO A 1 306 1 EDO EDO . H 4 EDO A 1 307 1 EDO EDO . I 5 CO2 A 1 308 1 CO2 CO2 . J 6 HOH A 1 401 22 HOH HOH . J 6 HOH A 2 402 23 HOH HOH . J 6 HOH A 3 403 19 HOH HOH . J 6 HOH A 4 404 51 HOH HOH . J 6 HOH A 5 405 14 HOH HOH . J 6 HOH A 6 406 45 HOH HOH . J 6 HOH A 7 407 50 HOH HOH . J 6 HOH A 8 408 58 HOH HOH . J 6 HOH A 9 409 8 HOH HOH . J 6 HOH A 10 410 16 HOH HOH . J 6 HOH A 11 411 62 HOH HOH . J 6 HOH A 12 412 52 HOH HOH . J 6 HOH A 13 413 53 HOH HOH . J 6 HOH A 14 414 75 HOH HOH . J 6 HOH A 15 415 17 HOH HOH . J 6 HOH A 16 416 11 HOH HOH . J 6 HOH A 17 417 7 HOH HOH . J 6 HOH A 18 418 68 HOH HOH . J 6 HOH A 19 419 74 HOH HOH . J 6 HOH A 20 420 21 HOH HOH . J 6 HOH A 21 421 80 HOH HOH . J 6 HOH A 22 422 38 HOH HOH . J 6 HOH A 23 423 69 HOH HOH . J 6 HOH A 24 424 77 HOH HOH . J 6 HOH A 25 425 57 HOH HOH . J 6 HOH A 26 426 73 HOH HOH . J 6 HOH A 27 427 71 HOH HOH . J 6 HOH A 28 428 24 HOH HOH . J 6 HOH A 29 429 1 HOH HOH . J 6 HOH A 30 430 2 HOH HOH . J 6 HOH A 31 431 3 HOH HOH . J 6 HOH A 32 432 4 HOH HOH . J 6 HOH A 33 433 5 HOH HOH . J 6 HOH A 34 434 6 HOH HOH . J 6 HOH A 35 435 9 HOH HOH . J 6 HOH A 36 436 10 HOH HOH . J 6 HOH A 37 437 12 HOH HOH . J 6 HOH A 38 438 13 HOH HOH . J 6 HOH A 39 439 15 HOH HOH . J 6 HOH A 40 440 18 HOH HOH . J 6 HOH A 41 441 20 HOH HOH . J 6 HOH A 42 442 25 HOH HOH . J 6 HOH A 43 443 26 HOH HOH . J 6 HOH A 44 444 27 HOH HOH . J 6 HOH A 45 445 28 HOH HOH . J 6 HOH A 46 446 29 HOH HOH . J 6 HOH A 47 447 30 HOH HOH . J 6 HOH A 48 448 31 HOH HOH . J 6 HOH A 49 449 32 HOH HOH . J 6 HOH A 50 450 33 HOH HOH . J 6 HOH A 51 451 34 HOH HOH . J 6 HOH A 52 452 35 HOH HOH . J 6 HOH A 53 453 36 HOH HOH . J 6 HOH A 54 454 37 HOH HOH . J 6 HOH A 55 455 39 HOH HOH . J 6 HOH A 56 456 40 HOH HOH . J 6 HOH A 57 457 41 HOH HOH . J 6 HOH A 58 458 42 HOH HOH . J 6 HOH A 59 459 43 HOH HOH . J 6 HOH A 60 460 44 HOH HOH . J 6 HOH A 61 461 46 HOH HOH . J 6 HOH A 62 462 47 HOH HOH . J 6 HOH A 63 463 48 HOH HOH . J 6 HOH A 64 464 49 HOH HOH . J 6 HOH A 65 465 54 HOH HOH . J 6 HOH A 66 466 55 HOH HOH . J 6 HOH A 67 467 56 HOH HOH . J 6 HOH A 68 468 59 HOH HOH . J 6 HOH A 69 469 60 HOH HOH . J 6 HOH A 70 470 61 HOH HOH . J 6 HOH A 71 471 63 HOH HOH . J 6 HOH A 72 472 64 HOH HOH . J 6 HOH A 73 473 65 HOH HOH . J 6 HOH A 74 474 66 HOH HOH . J 6 HOH A 75 475 67 HOH HOH . J 6 HOH A 76 476 70 HOH HOH . J 6 HOH A 77 477 72 HOH HOH . J 6 HOH A 78 478 76 HOH HOH . J 6 HOH A 79 479 78 HOH HOH . J 6 HOH A 80 480 79 HOH HOH . J 6 HOH A 81 481 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 29.788 -1.28 14.699 1 25.02 ? OAC NXL 301 A 1 HETATM 2 C CAN NXL . . . B 2 29.72 -0.18 13.871 1 28.16 ? CAN NXL 301 A 1 HETATM 3 N N NXL . . . B 2 30.575 0.806 13.815 1 28.95 ? N NXL 301 A 1 HETATM 4 C CAJ NXL . . . B 2 30.423 1.953 12.865 1 24.94 ? CAJ NXL 301 A 1 HETATM 5 C CA NXL . . . B 2 31.756 0.894 14.701 1 28.59 ? CA NXL 301 A 1 HETATM 6 C C NXL . . . B 2 31.429 1.825 15.851 1 31.64 ? C NXL 301 A 1 HETATM 7 O O NXL . . . B 2 30.318 2.318 16.007 1 39.74 ? O NXL 301 A 1 HETATM 8 N NAA NXL . . . B 2 32.379 2.1 16.707 1 30.42 ? NAA NXL 301 A 1 HETATM 9 C CB NXL . . . B 2 33.006 1.37 13.969 1 25.54 ? CB NXL 301 A 1 HETATM 10 C CAH NXL . . . B 2 32.876 2.179 12.906 1 26.26 ? CAH NXL 301 A 1 HETATM 11 C CAO NXL . . . B 2 31.665 2.109 11.984 1 25.43 ? CAO NXL 301 A 1 HETATM 12 N NAK NXL . . . B 2 31.79 1.063 10.974 1 31.93 ? NAK NXL 301 A 1 HETATM 13 O OAL NXL . . . B 2 31.759 -0.309 11.388 1 53.21 ? OAL NXL 301 A 1 HETATM 14 S SAR NXL . . . B 2 32.058 -1.786 10.809 1 38.45 ? SAR NXL 301 A 1 HETATM 15 O OAD NXL . . . B 2 31.89 -2.659 11.958 1 39.74 ? OAD NXL 301 A 1 HETATM 16 O OAE NXL . . . B 2 33.43 -2.057 10.342 1 47.03 ? OAE NXL 301 A 1 HETATM 17 O OAG NXL . . . B 2 31.133 -2.152 9.729 1 43.22 ? OAG NXL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #