data_4WM9 # _model_server_result.job_id CTXSWFKUhWc3w5bP0etVVQ _model_server_result.datetime_utc '2024-11-14 07:06:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4WM9 # _exptl.entry_id 4WM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WM9 _cell.length_a 102.18 _cell.length_b 102.18 _cell.length_c 87.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 81 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.352 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 72 n n C1 C2 EDO sing 73 n n C1 H11 EDO sing 74 n n C1 H12 EDO sing 75 n n O1 HO1 EDO sing 76 n n C2 O2 EDO sing 77 n n C2 H21 EDO sing 78 n n C2 H22 EDO sing 79 n n O2 HO2 EDO sing 80 n n # _atom_sites.entry_id 4WM9 _atom_sites.fract_transf_matrix[1][1] 0.009787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 301 1 NXL NXL . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 EDO A 1 303 1 EDO EDO . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 1 EDO EDO . G 4 EDO A 1 306 1 EDO EDO . H 4 EDO A 1 307 1 EDO EDO . I 5 CO2 A 1 308 1 CO2 CO2 . J 6 HOH A 1 401 22 HOH HOH . J 6 HOH A 2 402 23 HOH HOH . J 6 HOH A 3 403 19 HOH HOH . J 6 HOH A 4 404 51 HOH HOH . J 6 HOH A 5 405 14 HOH HOH . J 6 HOH A 6 406 45 HOH HOH . J 6 HOH A 7 407 50 HOH HOH . J 6 HOH A 8 408 58 HOH HOH . J 6 HOH A 9 409 8 HOH HOH . J 6 HOH A 10 410 16 HOH HOH . J 6 HOH A 11 411 62 HOH HOH . J 6 HOH A 12 412 52 HOH HOH . J 6 HOH A 13 413 53 HOH HOH . J 6 HOH A 14 414 75 HOH HOH . J 6 HOH A 15 415 17 HOH HOH . J 6 HOH A 16 416 11 HOH HOH . J 6 HOH A 17 417 7 HOH HOH . J 6 HOH A 18 418 68 HOH HOH . J 6 HOH A 19 419 74 HOH HOH . J 6 HOH A 20 420 21 HOH HOH . J 6 HOH A 21 421 80 HOH HOH . J 6 HOH A 22 422 38 HOH HOH . J 6 HOH A 23 423 69 HOH HOH . J 6 HOH A 24 424 77 HOH HOH . J 6 HOH A 25 425 57 HOH HOH . J 6 HOH A 26 426 73 HOH HOH . J 6 HOH A 27 427 71 HOH HOH . J 6 HOH A 28 428 24 HOH HOH . J 6 HOH A 29 429 1 HOH HOH . J 6 HOH A 30 430 2 HOH HOH . J 6 HOH A 31 431 3 HOH HOH . J 6 HOH A 32 432 4 HOH HOH . J 6 HOH A 33 433 5 HOH HOH . J 6 HOH A 34 434 6 HOH HOH . J 6 HOH A 35 435 9 HOH HOH . J 6 HOH A 36 436 10 HOH HOH . J 6 HOH A 37 437 12 HOH HOH . J 6 HOH A 38 438 13 HOH HOH . J 6 HOH A 39 439 15 HOH HOH . J 6 HOH A 40 440 18 HOH HOH . J 6 HOH A 41 441 20 HOH HOH . J 6 HOH A 42 442 25 HOH HOH . J 6 HOH A 43 443 26 HOH HOH . J 6 HOH A 44 444 27 HOH HOH . J 6 HOH A 45 445 28 HOH HOH . J 6 HOH A 46 446 29 HOH HOH . J 6 HOH A 47 447 30 HOH HOH . J 6 HOH A 48 448 31 HOH HOH . J 6 HOH A 49 449 32 HOH HOH . J 6 HOH A 50 450 33 HOH HOH . J 6 HOH A 51 451 34 HOH HOH . J 6 HOH A 52 452 35 HOH HOH . J 6 HOH A 53 453 36 HOH HOH . J 6 HOH A 54 454 37 HOH HOH . J 6 HOH A 55 455 39 HOH HOH . J 6 HOH A 56 456 40 HOH HOH . J 6 HOH A 57 457 41 HOH HOH . J 6 HOH A 58 458 42 HOH HOH . J 6 HOH A 59 459 43 HOH HOH . J 6 HOH A 60 460 44 HOH HOH . J 6 HOH A 61 461 46 HOH HOH . J 6 HOH A 62 462 47 HOH HOH . J 6 HOH A 63 463 48 HOH HOH . J 6 HOH A 64 464 49 HOH HOH . J 6 HOH A 65 465 54 HOH HOH . J 6 HOH A 66 466 55 HOH HOH . J 6 HOH A 67 467 56 HOH HOH . J 6 HOH A 68 468 59 HOH HOH . J 6 HOH A 69 469 60 HOH HOH . J 6 HOH A 70 470 61 HOH HOH . J 6 HOH A 71 471 63 HOH HOH . J 6 HOH A 72 472 64 HOH HOH . J 6 HOH A 73 473 65 HOH HOH . J 6 HOH A 74 474 66 HOH HOH . J 6 HOH A 75 475 67 HOH HOH . J 6 HOH A 76 476 70 HOH HOH . J 6 HOH A 77 477 72 HOH HOH . J 6 HOH A 78 478 76 HOH HOH . J 6 HOH A 79 479 78 HOH HOH . J 6 HOH A 80 480 79 HOH HOH . J 6 HOH A 81 481 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 3.27 -5.875 2.068 1 40.81 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 4 2.622 -5.483 3.315 1 36.96 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 4 3.297 -4.752 0.993 1 42.69 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 4 4.595 -4.146 0.659 1 40.1 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #