data_4WMA # _model_server_result.job_id RPkPbb_JVXBEFJJvUKPeaA _model_server_result.datetime_utc '2024-12-22 11:49:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4WMA # _exptl.entry_id 4WMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WMA _cell.length_a 90.028 _cell.length_b 90.028 _cell.length_c 43.136 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 XYS _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C BGC 1 B 1 BGC E 1 GCX 3 n C XYS 2 B 2 XYS E 1 GCX # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 263 A CYS 349 1_555 A SG CYS 288 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 270 A CYS 356 1_555 A SG CYS 299 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 9 D CYS 51 1_555 B SG CYS 20 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 14 D CYS 56 1_555 B SG CYS 29 D CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 31 D CYS 73 1_555 B SG CYS 40 D CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 B OG SER 11 D SER 53 1_555 C C1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale2 C O3 BGC . B BGC 1 1_555 C C1 XYS . B XYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 sing metalc ? metalc1 A OD2 ASP 139 A ASP 225 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc2 A OD1 ASP 141 A ASP 227 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 A OD2 ASP 141 A ASP 227 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 A NE2 HIS 296 A HIS 382 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 D MN MN . A MN 401 1_555 E O1A UPG . A UPG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 D MN MN . A MN 401 1_555 E O1B UPG . A UPG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4WMA _atom_sites.fract_transf_matrix[1][1] 0.011108 _atom_sites.fract_transf_matrix[1][2] 0.006413 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 401 1 MN MN . E 5 UPG A 1 402 264 UPG UPG . F 6 SO4 A 1 403 1 SO4 SO4 . G 7 HOH A 1 501 1 HOH HOH . G 7 HOH A 2 502 24 HOH HOH . G 7 HOH A 3 503 38 HOH HOH . G 7 HOH A 4 504 60 HOH HOH . G 7 HOH A 5 505 105 HOH HOH . G 7 HOH A 6 506 3 HOH HOH . G 7 HOH A 7 507 97 HOH HOH . G 7 HOH A 8 508 55 HOH HOH . G 7 HOH A 9 509 10 HOH HOH . G 7 HOH A 10 510 66 HOH HOH . G 7 HOH A 11 511 129 HOH HOH . G 7 HOH A 12 512 40 HOH HOH . G 7 HOH A 13 513 91 HOH HOH . G 7 HOH A 14 514 81 HOH HOH . G 7 HOH A 15 515 124 HOH HOH . G 7 HOH A 16 516 125 HOH HOH . G 7 HOH A 17 517 101 HOH HOH . G 7 HOH A 18 518 120 HOH HOH . G 7 HOH A 19 519 119 HOH HOH . G 7 HOH A 20 520 45 HOH HOH . G 7 HOH A 21 521 135 HOH HOH . G 7 HOH A 22 522 2 HOH HOH . G 7 HOH A 23 523 4 HOH HOH . G 7 HOH A 24 524 5 HOH HOH . G 7 HOH A 25 525 7 HOH HOH . G 7 HOH A 26 526 8 HOH HOH . G 7 HOH A 27 527 9 HOH HOH . G 7 HOH A 28 528 11 HOH HOH . G 7 HOH A 29 529 12 HOH HOH . G 7 HOH A 30 530 13 HOH HOH . G 7 HOH A 31 531 14 HOH HOH . G 7 HOH A 32 532 15 HOH HOH . G 7 HOH A 33 533 16 HOH HOH . G 7 HOH A 34 534 17 HOH HOH . G 7 HOH A 35 535 18 HOH HOH . G 7 HOH A 36 536 19 HOH HOH . G 7 HOH A 37 537 20 HOH HOH . G 7 HOH A 38 538 21 HOH HOH . G 7 HOH A 39 539 22 HOH HOH . G 7 HOH A 40 540 23 HOH HOH . G 7 HOH A 41 541 25 HOH HOH . G 7 HOH A 42 542 26 HOH HOH . G 7 HOH A 43 543 27 HOH HOH . G 7 HOH A 44 544 28 HOH HOH . G 7 HOH A 45 545 29 HOH HOH . G 7 HOH A 46 546 31 HOH HOH . G 7 HOH A 47 547 32 HOH HOH . G 7 HOH A 48 548 33 HOH HOH . G 7 HOH A 49 549 34 HOH HOH . G 7 HOH A 50 550 35 HOH HOH . G 7 HOH A 51 551 36 HOH HOH . G 7 HOH A 52 552 37 HOH HOH . G 7 HOH A 53 553 39 HOH HOH . G 7 HOH A 54 554 41 HOH HOH . G 7 HOH A 55 555 42 HOH HOH . G 7 HOH A 56 556 43 HOH HOH . G 7 HOH A 57 557 44 HOH HOH . G 7 HOH A 58 558 46 HOH HOH . G 7 HOH A 59 559 48 HOH HOH . G 7 HOH A 60 560 49 HOH HOH . G 7 HOH A 61 561 50 HOH HOH . G 7 HOH A 62 562 51 HOH HOH . G 7 HOH A 63 563 52 HOH HOH . G 7 HOH A 64 564 53 HOH HOH . G 7 HOH A 65 565 54 HOH HOH . G 7 HOH A 66 566 56 HOH HOH . G 7 HOH A 67 567 57 HOH HOH . G 7 HOH A 68 568 58 HOH HOH . G 7 HOH A 69 569 59 HOH HOH . G 7 HOH A 70 570 62 HOH HOH . G 7 HOH A 71 571 63 HOH HOH . G 7 HOH A 72 572 64 HOH HOH . G 7 HOH A 73 573 65 HOH HOH . G 7 HOH A 74 574 67 HOH HOH . G 7 HOH A 75 575 68 HOH HOH . G 7 HOH A 76 576 70 HOH HOH . G 7 HOH A 77 577 71 HOH HOH . G 7 HOH A 78 578 72 HOH HOH . G 7 HOH A 79 579 73 HOH HOH . G 7 HOH A 80 580 75 HOH HOH . G 7 HOH A 81 581 77 HOH HOH . G 7 HOH A 82 582 78 HOH HOH . G 7 HOH A 83 583 79 HOH HOH . G 7 HOH A 84 584 80 HOH HOH . G 7 HOH A 85 585 82 HOH HOH . G 7 HOH A 86 586 83 HOH HOH . G 7 HOH A 87 587 84 HOH HOH . G 7 HOH A 88 588 85 HOH HOH . G 7 HOH A 89 589 86 HOH HOH . G 7 HOH A 90 590 87 HOH HOH . G 7 HOH A 91 591 88 HOH HOH . G 7 HOH A 92 592 89 HOH HOH . G 7 HOH A 93 593 90 HOH HOH . G 7 HOH A 94 594 92 HOH HOH . G 7 HOH A 95 595 93 HOH HOH . G 7 HOH A 96 596 94 HOH HOH . G 7 HOH A 97 597 95 HOH HOH . G 7 HOH A 98 598 96 HOH HOH . G 7 HOH A 99 599 98 HOH HOH . G 7 HOH A 100 600 99 HOH HOH . G 7 HOH A 101 601 100 HOH HOH . G 7 HOH A 102 602 102 HOH HOH . G 7 HOH A 103 603 103 HOH HOH . G 7 HOH A 104 604 104 HOH HOH . G 7 HOH A 105 605 106 HOH HOH . G 7 HOH A 106 606 107 HOH HOH . G 7 HOH A 107 607 108 HOH HOH . G 7 HOH A 108 608 109 HOH HOH . G 7 HOH A 109 609 110 HOH HOH . G 7 HOH A 110 610 111 HOH HOH . G 7 HOH A 111 611 112 HOH HOH . G 7 HOH A 112 612 113 HOH HOH . G 7 HOH A 113 613 114 HOH HOH . G 7 HOH A 114 614 115 HOH HOH . G 7 HOH A 115 615 116 HOH HOH . G 7 HOH A 116 616 117 HOH HOH . G 7 HOH A 117 617 118 HOH HOH . G 7 HOH A 118 618 121 HOH HOH . G 7 HOH A 119 619 122 HOH HOH . G 7 HOH A 120 620 123 HOH HOH . G 7 HOH A 121 621 126 HOH HOH . G 7 HOH A 122 622 128 HOH HOH . G 7 HOH A 123 623 131 HOH HOH . G 7 HOH A 124 624 133 HOH HOH . G 7 HOH A 125 625 134 HOH HOH . G 7 HOH A 126 626 136 HOH HOH . G 7 HOH A 127 627 137 HOH HOH . H 7 HOH D 1 201 6 HOH HOH . H 7 HOH D 2 202 30 HOH HOH . H 7 HOH D 3 203 47 HOH HOH . H 7 HOH D 4 204 61 HOH HOH . H 7 HOH D 5 205 69 HOH HOH . H 7 HOH D 6 206 74 HOH HOH . H 7 HOH D 7 207 76 HOH HOH . H 7 HOH D 8 208 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -19.03 _atom_site.Cartn_y -21.707 _atom_site.Cartn_z -8.611 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 281 _model_server_stats.parse_time_ms 661 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 1546 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #