data_4WMD # _model_server_result.job_id vMZQAt2nm5uA_tFqm7SYsw _model_server_result.datetime_utc '2024-11-01 13:30:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4WMD # _exptl.entry_id 4WMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4WMD _cell.length_a 81.017 _cell.length_b 168.518 _cell.length_c 250.524 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,K,L 1 1 C,H,I,J,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 81.017 0 125.262 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 I N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 274 n n C1 C2 PEG sing 275 n n C1 H11 PEG sing 276 n n C1 H12 PEG sing 277 n n O1 HO1 PEG sing 278 n n C2 O2 PEG sing 279 n n C2 H21 PEG sing 280 n n C2 H22 PEG sing 281 n n O2 C3 PEG sing 282 n n C3 C4 PEG sing 283 n n C3 H31 PEG sing 284 n n C3 H32 PEG sing 285 n n C4 O4 PEG sing 286 n n C4 H41 PEG sing 287 n n C4 H42 PEG sing 288 n n O4 HO4 PEG sing 289 n n # _atom_sites.entry_id 4WMD _atom_sites.fract_transf_matrix[1][1] 0.012343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PEG A 1 401 3 PEG PEG . E 3 PGE A 1 402 2 PGE PGE . F 2 PEG B 1 401 1 PEG PEG . G 4 PG4 B 1 402 1 PG4 PG4 . H 5 1PE C 1 401 1 1PE 1PE . I 2 PEG C 1 402 2 PEG PEG . J 3 PGE C 1 403 1 PGE PGE . K 6 HOH A 1 501 22 HOH HOH . K 6 HOH A 2 502 125 HOH HOH . K 6 HOH A 3 503 14 HOH HOH . K 6 HOH A 4 504 161 HOH HOH . K 6 HOH A 5 505 19 HOH HOH . K 6 HOH A 6 506 174 HOH HOH . K 6 HOH A 7 507 148 HOH HOH . K 6 HOH A 8 508 318 HOH HOH . K 6 HOH A 9 509 264 HOH HOH . K 6 HOH A 10 510 1 HOH HOH . K 6 HOH A 11 511 7 HOH HOH . K 6 HOH A 12 512 18 HOH HOH . K 6 HOH A 13 513 24 HOH HOH . K 6 HOH A 14 514 25 HOH HOH . K 6 HOH A 15 515 38 HOH HOH . K 6 HOH A 16 516 39 HOH HOH . K 6 HOH A 17 517 45 HOH HOH . K 6 HOH A 18 518 47 HOH HOH . K 6 HOH A 19 519 51 HOH HOH . K 6 HOH A 20 520 52 HOH HOH . K 6 HOH A 21 521 53 HOH HOH . K 6 HOH A 22 522 55 HOH HOH . K 6 HOH A 23 523 73 HOH HOH . K 6 HOH A 24 524 74 HOH HOH . K 6 HOH A 25 525 80 HOH HOH . K 6 HOH A 26 526 86 HOH HOH . K 6 HOH A 27 527 87 HOH HOH . K 6 HOH A 28 528 88 HOH HOH . K 6 HOH A 29 529 94 HOH HOH . K 6 HOH A 30 530 101 HOH HOH . K 6 HOH A 31 531 104 HOH HOH . K 6 HOH A 32 532 105 HOH HOH . K 6 HOH A 33 533 108 HOH HOH . K 6 HOH A 34 534 110 HOH HOH . K 6 HOH A 35 535 114 HOH HOH . K 6 HOH A 36 536 119 HOH HOH . K 6 HOH A 37 537 122 HOH HOH . K 6 HOH A 38 538 124 HOH HOH . K 6 HOH A 39 539 126 HOH HOH . K 6 HOH A 40 540 129 HOH HOH . K 6 HOH A 41 541 139 HOH HOH . K 6 HOH A 42 542 151 HOH HOH . K 6 HOH A 43 543 154 HOH HOH . K 6 HOH A 44 544 160 HOH HOH . K 6 HOH A 45 545 165 HOH HOH . K 6 HOH A 46 546 168 HOH HOH . K 6 HOH A 47 547 170 HOH HOH . K 6 HOH A 48 548 178 HOH HOH . K 6 HOH A 49 549 181 HOH HOH . K 6 HOH A 50 550 183 HOH HOH . K 6 HOH A 51 551 186 HOH HOH . K 6 HOH A 52 552 188 HOH HOH . K 6 HOH A 53 553 189 HOH HOH . K 6 HOH A 54 554 190 HOH HOH . K 6 HOH A 55 555 194 HOH HOH . K 6 HOH A 56 556 197 HOH HOH . K 6 HOH A 57 557 198 HOH HOH . K 6 HOH A 58 558 204 HOH HOH . K 6 HOH A 59 559 207 HOH HOH . K 6 HOH A 60 560 208 HOH HOH . K 6 HOH A 61 561 221 HOH HOH . K 6 HOH A 62 562 222 HOH HOH . K 6 HOH A 63 563 226 HOH HOH . K 6 HOH A 64 564 240 HOH HOH . K 6 HOH A 65 565 244 HOH HOH . K 6 HOH A 66 566 245 HOH HOH . K 6 HOH A 67 567 247 HOH HOH . K 6 HOH A 68 568 254 HOH HOH . K 6 HOH A 69 569 263 HOH HOH . K 6 HOH A 70 570 265 HOH HOH . K 6 HOH A 71 571 267 HOH HOH . K 6 HOH A 72 572 269 HOH HOH . K 6 HOH A 73 573 270 HOH HOH . K 6 HOH A 74 574 272 HOH HOH . K 6 HOH A 75 575 277 HOH HOH . K 6 HOH A 76 576 283 HOH HOH . K 6 HOH A 77 577 286 HOH HOH . K 6 HOH A 78 578 300 HOH HOH . K 6 HOH A 79 579 302 HOH HOH . K 6 HOH A 80 580 313 HOH HOH . K 6 HOH A 81 581 326 HOH HOH . K 6 HOH A 82 582 330 HOH HOH . K 6 HOH A 83 583 336 HOH HOH . K 6 HOH A 84 584 337 HOH HOH . L 6 HOH B 1 501 172 HOH HOH . L 6 HOH B 2 502 212 HOH HOH . L 6 HOH B 3 503 143 HOH HOH . L 6 HOH B 4 504 48 HOH HOH . L 6 HOH B 5 505 50 HOH HOH . L 6 HOH B 6 506 137 HOH HOH . L 6 HOH B 7 507 289 HOH HOH . L 6 HOH B 8 508 211 HOH HOH . L 6 HOH B 9 509 159 HOH HOH . L 6 HOH B 10 510 248 HOH HOH . L 6 HOH B 11 511 2 HOH HOH . L 6 HOH B 12 512 4 HOH HOH . L 6 HOH B 13 513 6 HOH HOH . L 6 HOH B 14 514 9 HOH HOH . L 6 HOH B 15 515 13 HOH HOH . L 6 HOH B 16 516 16 HOH HOH . L 6 HOH B 17 517 17 HOH HOH . L 6 HOH B 18 518 21 HOH HOH . L 6 HOH B 19 519 23 HOH HOH . L 6 HOH B 20 520 28 HOH HOH . L 6 HOH B 21 521 29 HOH HOH . L 6 HOH B 22 522 30 HOH HOH . L 6 HOH B 23 523 31 HOH HOH . L 6 HOH B 24 524 32 HOH HOH . L 6 HOH B 25 525 33 HOH HOH . L 6 HOH B 26 526 34 HOH HOH . L 6 HOH B 27 527 43 HOH HOH . L 6 HOH B 28 528 46 HOH HOH . L 6 HOH B 29 529 59 HOH HOH . L 6 HOH B 30 530 60 HOH HOH . L 6 HOH B 31 531 65 HOH HOH . L 6 HOH B 32 532 66 HOH HOH . L 6 HOH B 33 533 68 HOH HOH . L 6 HOH B 34 534 71 HOH HOH . L 6 HOH B 35 535 76 HOH HOH . L 6 HOH B 36 536 77 HOH HOH . L 6 HOH B 37 537 78 HOH HOH . L 6 HOH B 38 538 82 HOH HOH . L 6 HOH B 39 539 89 HOH HOH . L 6 HOH B 40 540 90 HOH HOH . L 6 HOH B 41 541 91 HOH HOH . L 6 HOH B 42 542 92 HOH HOH . L 6 HOH B 43 543 95 HOH HOH . L 6 HOH B 44 544 96 HOH HOH . L 6 HOH B 45 545 98 HOH HOH . L 6 HOH B 46 546 121 HOH HOH . L 6 HOH B 47 547 127 HOH HOH . L 6 HOH B 48 548 138 HOH HOH . L 6 HOH B 49 549 140 HOH HOH . L 6 HOH B 50 550 141 HOH HOH . L 6 HOH B 51 551 142 HOH HOH . L 6 HOH B 52 552 147 HOH HOH . L 6 HOH B 53 553 150 HOH HOH . L 6 HOH B 54 554 152 HOH HOH . L 6 HOH B 55 555 153 HOH HOH . L 6 HOH B 56 556 156 HOH HOH . L 6 HOH B 57 557 157 HOH HOH . L 6 HOH B 58 558 158 HOH HOH . L 6 HOH B 59 559 162 HOH HOH . L 6 HOH B 60 560 163 HOH HOH . L 6 HOH B 61 561 166 HOH HOH . L 6 HOH B 62 562 169 HOH HOH . L 6 HOH B 63 563 185 HOH HOH . L 6 HOH B 64 564 196 HOH HOH . L 6 HOH B 65 565 200 HOH HOH . L 6 HOH B 66 566 201 HOH HOH . L 6 HOH B 67 567 202 HOH HOH . L 6 HOH B 68 568 203 HOH HOH . L 6 HOH B 69 569 209 HOH HOH . L 6 HOH B 70 570 213 HOH HOH . L 6 HOH B 71 571 214 HOH HOH . L 6 HOH B 72 572 215 HOH HOH . L 6 HOH B 73 573 217 HOH HOH . L 6 HOH B 74 574 223 HOH HOH . L 6 HOH B 75 575 224 HOH HOH . L 6 HOH B 76 576 227 HOH HOH . L 6 HOH B 77 577 228 HOH HOH . L 6 HOH B 78 578 230 HOH HOH . L 6 HOH B 79 579 235 HOH HOH . L 6 HOH B 80 580 250 HOH HOH . L 6 HOH B 81 581 252 HOH HOH . L 6 HOH B 82 582 262 HOH HOH . L 6 HOH B 83 583 271 HOH HOH . L 6 HOH B 84 584 273 HOH HOH . L 6 HOH B 85 585 276 HOH HOH . L 6 HOH B 86 586 278 HOH HOH . L 6 HOH B 87 587 281 HOH HOH . L 6 HOH B 88 588 284 HOH HOH . L 6 HOH B 89 589 287 HOH HOH . L 6 HOH B 90 590 293 HOH HOH . L 6 HOH B 91 591 304 HOH HOH . L 6 HOH B 92 592 308 HOH HOH . L 6 HOH B 93 593 312 HOH HOH . L 6 HOH B 94 594 317 HOH HOH . L 6 HOH B 95 595 319 HOH HOH . L 6 HOH B 96 596 320 HOH HOH . L 6 HOH B 97 597 321 HOH HOH . L 6 HOH B 98 598 322 HOH HOH . L 6 HOH B 99 599 323 HOH HOH . L 6 HOH B 100 600 328 HOH HOH . L 6 HOH B 101 601 333 HOH HOH . L 6 HOH B 102 602 335 HOH HOH . M 6 HOH C 1 501 176 HOH HOH . M 6 HOH C 2 502 113 HOH HOH . M 6 HOH C 3 503 237 HOH HOH . M 6 HOH C 4 504 26 HOH HOH . M 6 HOH C 5 505 251 HOH HOH . M 6 HOH C 6 506 85 HOH HOH . M 6 HOH C 7 507 10 HOH HOH . M 6 HOH C 8 508 27 HOH HOH . M 6 HOH C 9 509 146 HOH HOH . M 6 HOH C 10 510 69 HOH HOH . M 6 HOH C 11 511 72 HOH HOH . M 6 HOH C 12 512 225 HOH HOH . M 6 HOH C 13 513 56 HOH HOH . M 6 HOH C 14 514 249 HOH HOH . M 6 HOH C 15 515 3 HOH HOH . M 6 HOH C 16 516 5 HOH HOH . M 6 HOH C 17 517 8 HOH HOH . M 6 HOH C 18 518 11 HOH HOH . M 6 HOH C 19 519 15 HOH HOH . M 6 HOH C 20 520 20 HOH HOH . M 6 HOH C 21 521 35 HOH HOH . M 6 HOH C 22 522 36 HOH HOH . M 6 HOH C 23 523 37 HOH HOH . M 6 HOH C 24 524 40 HOH HOH . M 6 HOH C 25 525 41 HOH HOH . M 6 HOH C 26 526 42 HOH HOH . M 6 HOH C 27 527 44 HOH HOH . M 6 HOH C 28 528 49 HOH HOH . M 6 HOH C 29 529 54 HOH HOH . M 6 HOH C 30 530 57 HOH HOH . M 6 HOH C 31 531 58 HOH HOH . M 6 HOH C 32 532 61 HOH HOH . M 6 HOH C 33 533 62 HOH HOH . M 6 HOH C 34 534 63 HOH HOH . M 6 HOH C 35 535 64 HOH HOH . M 6 HOH C 36 536 70 HOH HOH . M 6 HOH C 37 537 79 HOH HOH . M 6 HOH C 38 538 83 HOH HOH . M 6 HOH C 39 539 84 HOH HOH . M 6 HOH C 40 540 93 HOH HOH . M 6 HOH C 41 541 97 HOH HOH . M 6 HOH C 42 542 99 HOH HOH . M 6 HOH C 43 543 102 HOH HOH . M 6 HOH C 44 544 106 HOH HOH . M 6 HOH C 45 545 109 HOH HOH . M 6 HOH C 46 546 112 HOH HOH . M 6 HOH C 47 547 115 HOH HOH . M 6 HOH C 48 548 116 HOH HOH . M 6 HOH C 49 549 117 HOH HOH . M 6 HOH C 50 550 123 HOH HOH . M 6 HOH C 51 551 130 HOH HOH . M 6 HOH C 52 552 131 HOH HOH . M 6 HOH C 53 553 132 HOH HOH . M 6 HOH C 54 554 133 HOH HOH . M 6 HOH C 55 555 134 HOH HOH . M 6 HOH C 56 556 135 HOH HOH . M 6 HOH C 57 557 144 HOH HOH . M 6 HOH C 58 558 145 HOH HOH . M 6 HOH C 59 559 149 HOH HOH . M 6 HOH C 60 560 155 HOH HOH . M 6 HOH C 61 561 164 HOH HOH . M 6 HOH C 62 562 167 HOH HOH . M 6 HOH C 63 563 171 HOH HOH . M 6 HOH C 64 564 173 HOH HOH . M 6 HOH C 65 565 175 HOH HOH . M 6 HOH C 66 566 179 HOH HOH . M 6 HOH C 67 567 180 HOH HOH . M 6 HOH C 68 568 191 HOH HOH . M 6 HOH C 69 569 193 HOH HOH . M 6 HOH C 70 570 195 HOH HOH . M 6 HOH C 71 571 210 HOH HOH . M 6 HOH C 72 572 216 HOH HOH . M 6 HOH C 73 573 218 HOH HOH . M 6 HOH C 74 574 220 HOH HOH . M 6 HOH C 75 575 229 HOH HOH . M 6 HOH C 76 576 232 HOH HOH . M 6 HOH C 77 577 233 HOH HOH . M 6 HOH C 78 578 234 HOH HOH . M 6 HOH C 79 579 236 HOH HOH . M 6 HOH C 80 580 243 HOH HOH . M 6 HOH C 81 581 253 HOH HOH . M 6 HOH C 82 582 259 HOH HOH . M 6 HOH C 83 583 266 HOH HOH . M 6 HOH C 84 584 275 HOH HOH . M 6 HOH C 85 585 279 HOH HOH . M 6 HOH C 86 586 285 HOH HOH . M 6 HOH C 87 587 291 HOH HOH . M 6 HOH C 88 588 296 HOH HOH . M 6 HOH C 89 589 298 HOH HOH . M 6 HOH C 90 590 299 HOH HOH . M 6 HOH C 91 591 305 HOH HOH . M 6 HOH C 92 592 311 HOH HOH . M 6 HOH C 93 593 324 HOH HOH . M 6 HOH C 94 594 325 HOH HOH . M 6 HOH C 95 595 329 HOH HOH . M 6 HOH C 96 596 334 HOH HOH . M 6 HOH C 97 597 338 HOH HOH . M 6 HOH C 98 598 339 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 2 30.224 23.626 14.518 1 75.45 ? C1 PEG 401 A 1 HETATM 2 O O1 PEG . . . D 2 29.232 22.679 14.887 1 71.4 ? O1 PEG 401 A 1 HETATM 3 C C2 PEG . . . D 2 29.586 24.708 13.578 1 66.28 ? C2 PEG 401 A 1 HETATM 4 O O2 PEG . . . D 2 30.305 25.944 13.725 1 64.86 ? O2 PEG 401 A 1 HETATM 5 C C3 PEG . . . D 2 29.537 27.115 13.537 1 55.55 ? C3 PEG 401 A 1 HETATM 6 C C4 PEG . . . D 2 29.232 27.723 14.887 1 59.94 ? C4 PEG 401 A 1 HETATM 7 O O4 PEG . . . D 2 29.721 29.044 14.935 1 59.14 ? O4 PEG 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 7 #