data_4WMK # _model_server_result.job_id bNwbP4SiCmvIPdqY8QhPKw _model_server_result.datetime_utc '2024-11-04 18:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4wmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 4WMK # _exptl.entry_id 4WMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4WMK _cell.length_a 88.911 _cell.length_b 88.911 _cell.length_c 42.683 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 XYS BGC C1 O1 . O3 HO3 . sing 2 ? 3 3 2 XYS XYS C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C BGC 1 B 1 BGC C 1 GXX 3 n C XYS 2 B 2 XYS C 1 GXX 3 n C XYS 3 B 3 XYS C 1 GXX # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 263 A CYS 349 1_555 A SG CYS 288 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 270 A CYS 356 1_555 A SG CYS 299 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 9 D CYS 51 1_555 B SG CYS 20 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 14 D CYS 56 1_555 B SG CYS 29 D CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 31 D CYS 73 1_555 B SG CYS 40 D CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 B OG SER 11 D SER 53 1_555 C C1 BGC . B BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? covale ? covale2 C O3 BGC . B BGC 1 1_555 C C1 XYS . B XYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 sing covale ? covale3 C O3 XYS . B XYS 2 1_555 C C1 XYS . B XYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 sing metalc ? metalc1 A OD2 ASP 139 A ASP 225 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A OD1 ASP 141 A ASP 227 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A OD2 ASP 141 A ASP 227 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 A NE2 HIS 296 A HIS 382 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 D MN MN . A MN 401 1_555 E O2A UDP . A UDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 D MN MN . A MN 401 1_555 E O3B UDP . A UDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 314 n n S O2 SO4 doub 315 n n S O3 SO4 sing 316 n n S O4 SO4 sing 317 n n # _atom_sites.entry_id 4WMK _atom_sites.fract_transf_matrix[1][1] 0.011247 _atom_sites.fract_transf_matrix[1][2] 0.006494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 401 1 MN MN . E 5 UDP A 1 402 1 UDP UDP . F 6 SO4 A 1 403 1 SO4 SO4 . G 7 HOH A 1 501 77 HOH HOH . G 7 HOH A 2 502 64 HOH HOH . G 7 HOH A 3 503 54 HOH HOH . G 7 HOH A 4 504 14 HOH HOH . G 7 HOH A 5 505 13 HOH HOH . G 7 HOH A 6 506 50 HOH HOH . G 7 HOH A 7 507 49 HOH HOH . G 7 HOH A 8 508 78 HOH HOH . G 7 HOH A 9 509 11 HOH HOH . G 7 HOH A 10 510 55 HOH HOH . G 7 HOH A 11 511 24 HOH HOH . G 7 HOH A 12 512 87 HOH HOH . G 7 HOH A 13 513 102 HOH HOH . G 7 HOH A 14 514 100 HOH HOH . G 7 HOH A 15 515 1 HOH HOH . G 7 HOH A 16 516 2 HOH HOH . G 7 HOH A 17 517 3 HOH HOH . G 7 HOH A 18 518 4 HOH HOH . G 7 HOH A 19 519 5 HOH HOH . G 7 HOH A 20 520 6 HOH HOH . G 7 HOH A 21 521 7 HOH HOH . G 7 HOH A 22 522 8 HOH HOH . G 7 HOH A 23 523 9 HOH HOH . G 7 HOH A 24 524 10 HOH HOH . G 7 HOH A 25 525 12 HOH HOH . G 7 HOH A 26 526 15 HOH HOH . G 7 HOH A 27 527 16 HOH HOH . G 7 HOH A 28 528 17 HOH HOH . G 7 HOH A 29 529 18 HOH HOH . G 7 HOH A 30 530 19 HOH HOH . G 7 HOH A 31 531 20 HOH HOH . G 7 HOH A 32 532 21 HOH HOH . G 7 HOH A 33 533 22 HOH HOH . G 7 HOH A 34 534 23 HOH HOH . G 7 HOH A 35 535 25 HOH HOH . G 7 HOH A 36 536 26 HOH HOH . G 7 HOH A 37 537 27 HOH HOH . G 7 HOH A 38 538 28 HOH HOH . G 7 HOH A 39 539 30 HOH HOH . G 7 HOH A 40 540 31 HOH HOH . G 7 HOH A 41 541 32 HOH HOH . G 7 HOH A 42 542 33 HOH HOH . G 7 HOH A 43 543 34 HOH HOH . G 7 HOH A 44 544 36 HOH HOH . G 7 HOH A 45 545 37 HOH HOH . G 7 HOH A 46 546 38 HOH HOH . G 7 HOH A 47 547 39 HOH HOH . G 7 HOH A 48 548 41 HOH HOH . G 7 HOH A 49 549 43 HOH HOH . G 7 HOH A 50 550 44 HOH HOH . G 7 HOH A 51 551 47 HOH HOH . G 7 HOH A 52 552 48 HOH HOH . G 7 HOH A 53 553 51 HOH HOH . G 7 HOH A 54 554 52 HOH HOH . G 7 HOH A 55 555 56 HOH HOH . G 7 HOH A 56 556 57 HOH HOH . G 7 HOH A 57 557 58 HOH HOH . G 7 HOH A 58 558 59 HOH HOH . G 7 HOH A 59 559 60 HOH HOH . G 7 HOH A 60 560 61 HOH HOH . G 7 HOH A 61 561 62 HOH HOH . G 7 HOH A 62 562 67 HOH HOH . G 7 HOH A 63 563 69 HOH HOH . G 7 HOH A 64 564 70 HOH HOH . G 7 HOH A 65 565 71 HOH HOH . G 7 HOH A 66 566 72 HOH HOH . G 7 HOH A 67 567 73 HOH HOH . G 7 HOH A 68 568 74 HOH HOH . G 7 HOH A 69 569 79 HOH HOH . G 7 HOH A 70 570 81 HOH HOH . G 7 HOH A 71 571 82 HOH HOH . G 7 HOH A 72 572 83 HOH HOH . G 7 HOH A 73 573 91 HOH HOH . G 7 HOH A 74 574 93 HOH HOH . G 7 HOH A 75 575 94 HOH HOH . G 7 HOH A 76 576 99 HOH HOH . G 7 HOH A 77 577 101 HOH HOH . G 7 HOH A 78 578 103 HOH HOH . H 7 HOH D 1 201 84 HOH HOH . H 7 HOH D 2 202 29 HOH HOH . H 7 HOH D 3 203 40 HOH HOH . H 7 HOH D 4 204 45 HOH HOH . H 7 HOH D 5 205 46 HOH HOH . H 7 HOH D 6 206 63 HOH HOH . H 7 HOH D 7 207 66 HOH HOH . H 7 HOH D 8 208 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 6 -3.171 -17.283 0.872 1 42.06 ? S SO4 403 A 1 HETATM 2 O O1 SO4 . . . F 6 -2.53 -16.38 -0.111 1 40.4 ? O1 SO4 403 A 1 HETATM 3 O O2 SO4 . . . F 6 -2.881 -18.706 0.551 1 38.35 ? O2 SO4 403 A 1 HETATM 4 O O3 SO4 . . . F 6 -4.643 -17.049 0.803 1 41.53 ? O3 SO4 403 A 1 HETATM 5 O O4 SO4 . . . F 6 -2.672 -17 2.243 1 36.96 ? O4 SO4 403 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #