data_4WMR
#
_model_server_result.job_id            w0f5uV-deWQblK4OpzUzvQ 
_model_server_result.datetime_utc      '2024-11-28 07:57:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":406}' 
#
_entry.id    4WMR 
#
_exptl.entry_id    4WMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.6 
_cell.angle_gamma         90 
_cell.entry_id            4WMR 
_cell.length_a            72.77 
_cell.length_b            38.41 
_cell.length_c            48.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
A,B,C,D,E,F,G,H 3 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -10.542863 0 47.166057 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 53 A HIS 224 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc2 A NE2 HIS 81 A HIS 252 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc3 A OD2 ASP 85 A ASP 256 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc4 B ZN ZN . A ZN 401 1_555 E N46 865 . A 865 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc5 B ZN ZN . A ZN 401 1_555 F O2 POP . A POP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
metalc ? metalc6 B ZN ZN . A ZN 401 1_555 F O5 POP . A POP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc7 C ZN ZN . A ZN 402 1_555 G O2 POP . A POP 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc8 D ZN ZN . A ZN 403 1_555 F O3 POP . A POP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc9 D ZN ZN . A ZN 403 1_555 F O6 POP . A POP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc10 D ZN ZN . A ZN 403 1_555 F O6 POP . A POP 405 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc11 D ZN ZN . A ZN 403 1_555 F O3 POP . A POP 405 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 349 n n 
P1 O2 POP sing 350 n n 
P1 O3 POP sing 351 n n 
P1 O POP sing 352 n n 
O2 HO2 POP sing 353 n n 
O P2 POP sing 354 n n 
P2 O4 POP doub 355 n n 
P2 O5 POP sing 356 n n 
P2 O6 POP sing 357 n n 
O5 HO5 POP sing 358 n n 
#
_atom_sites.entry_id                     4WMR 
_atom_sites.fract_transf_matrix[1][1]    0.013742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00307 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 1 ZN ZN . 
C 2 ZN A 1 402 2 ZN ZN . 
D 2 ZN A 1 403 3 ZN ZN . 
E 3 865 A 1 404 1 865 865 . 
F 4 POP A 1 405 1 POP POP . 
G 4 POP A 1 406 2 POP POP . 
H 5 HOH A 1 501 50 HOH HOH . 
H 5 HOH A 2 502 139 HOH HOH . 
H 5 HOH A 3 503 96 HOH HOH . 
H 5 HOH A 4 504 71 HOH HOH . 
H 5 HOH A 5 505 144 HOH HOH . 
H 5 HOH A 6 506 73 HOH HOH . 
H 5 HOH A 7 507 11 HOH HOH . 
H 5 HOH A 8 508 132 HOH HOH . 
H 5 HOH A 9 509 106 HOH HOH . 
H 5 HOH A 10 510 60 HOH HOH . 
H 5 HOH A 11 511 86 HOH HOH . 
H 5 HOH A 12 512 115 HOH HOH . 
H 5 HOH A 13 513 14 HOH HOH . 
H 5 HOH A 14 514 92 HOH HOH . 
H 5 HOH A 15 515 44 HOH HOH . 
H 5 HOH A 16 516 12 HOH HOH . 
H 5 HOH A 17 517 118 HOH HOH . 
H 5 HOH A 18 518 1 HOH HOH . 
H 5 HOH A 19 519 37 HOH HOH . 
H 5 HOH A 20 520 69 HOH HOH . 
H 5 HOH A 21 521 99 HOH HOH . 
H 5 HOH A 22 522 15 HOH HOH . 
H 5 HOH A 23 523 18 HOH HOH . 
H 5 HOH A 24 524 45 HOH HOH . 
H 5 HOH A 25 525 81 HOH HOH . 
H 5 HOH A 26 526 17 HOH HOH . 
H 5 HOH A 27 527 28 HOH HOH . 
H 5 HOH A 28 528 52 HOH HOH . 
H 5 HOH A 29 529 5 HOH HOH . 
H 5 HOH A 30 530 147 HOH HOH . 
H 5 HOH A 31 531 53 HOH HOH . 
H 5 HOH A 32 532 102 HOH HOH . 
H 5 HOH A 33 533 138 HOH HOH . 
H 5 HOH A 34 534 23 HOH HOH . 
H 5 HOH A 35 535 10 HOH HOH . 
H 5 HOH A 36 536 21 HOH HOH . 
H 5 HOH A 37 537 142 HOH HOH . 
H 5 HOH A 38 538 16 HOH HOH . 
H 5 HOH A 39 539 137 HOH HOH . 
H 5 HOH A 40 540 125 HOH HOH . 
H 5 HOH A 41 541 117 HOH HOH . 
H 5 HOH A 42 542 41 HOH HOH . 
H 5 HOH A 43 543 128 HOH HOH . 
H 5 HOH A 44 544 80 HOH HOH . 
H 5 HOH A 45 545 74 HOH HOH . 
H 5 HOH A 46 546 29 HOH HOH . 
H 5 HOH A 47 547 56 HOH HOH . 
H 5 HOH A 48 548 136 HOH HOH . 
H 5 HOH A 49 549 121 HOH HOH . 
H 5 HOH A 50 550 70 HOH HOH . 
H 5 HOH A 51 551 46 HOH HOH . 
H 5 HOH A 52 552 7 HOH HOH . 
H 5 HOH A 53 553 88 HOH HOH . 
H 5 HOH A 54 554 130 HOH HOH . 
H 5 HOH A 55 555 66 HOH HOH . 
H 5 HOH A 56 556 122 HOH HOH . 
H 5 HOH A 57 557 62 HOH HOH . 
H 5 HOH A 58 558 110 HOH HOH . 
H 5 HOH A 59 559 42 HOH HOH . 
H 5 HOH A 60 560 90 HOH HOH . 
H 5 HOH A 61 561 126 HOH HOH . 
H 5 HOH A 62 562 95 HOH HOH . 
H 5 HOH A 63 563 82 HOH HOH . 
H 5 HOH A 64 564 25 HOH HOH . 
H 5 HOH A 65 565 109 HOH HOH . 
H 5 HOH A 66 566 123 HOH HOH . 
H 5 HOH A 67 567 39 HOH HOH . 
H 5 HOH A 68 568 27 HOH HOH . 
H 5 HOH A 69 569 113 HOH HOH . 
H 5 HOH A 70 570 97 HOH HOH . 
H 5 HOH A 71 571 120 HOH HOH . 
H 5 HOH A 72 572 101 HOH HOH . 
H 5 HOH A 73 573 114 HOH HOH . 
H 5 HOH A 74 574 119 HOH HOH . 
H 5 HOH A 75 575 64 HOH HOH . 
H 5 HOH A 76 576 116 HOH HOH . 
H 5 HOH A 77 577 105 HOH HOH . 
H 5 HOH A 78 578 65 HOH HOH . 
H 5 HOH A 79 579 131 HOH HOH . 
H 5 HOH A 80 580 6 HOH HOH . 
H 5 HOH A 81 581 8 HOH HOH . 
H 5 HOH A 82 582 9 HOH HOH . 
H 5 HOH A 83 583 13 HOH HOH . 
H 5 HOH A 84 584 19 HOH HOH . 
H 5 HOH A 85 585 20 HOH HOH . 
H 5 HOH A 86 586 22 HOH HOH . 
H 5 HOH A 87 587 24 HOH HOH . 
H 5 HOH A 88 588 26 HOH HOH . 
H 5 HOH A 89 589 30 HOH HOH . 
H 5 HOH A 90 590 31 HOH HOH . 
H 5 HOH A 91 591 32 HOH HOH . 
H 5 HOH A 92 592 33 HOH HOH . 
H 5 HOH A 93 593 34 HOH HOH . 
H 5 HOH A 94 594 35 HOH HOH . 
H 5 HOH A 95 595 38 HOH HOH . 
H 5 HOH A 96 596 40 HOH HOH . 
H 5 HOH A 97 597 43 HOH HOH . 
H 5 HOH A 98 598 47 HOH HOH . 
H 5 HOH A 99 599 51 HOH HOH . 
H 5 HOH A 100 600 55 HOH HOH . 
H 5 HOH A 101 601 58 HOH HOH . 
H 5 HOH A 102 602 59 HOH HOH . 
H 5 HOH A 103 603 61 HOH HOH . 
H 5 HOH A 104 604 63 HOH HOH . 
H 5 HOH A 105 605 76 HOH HOH . 
H 5 HOH A 106 606 78 HOH HOH . 
H 5 HOH A 107 607 79 HOH HOH . 
H 5 HOH A 108 608 83 HOH HOH . 
H 5 HOH A 109 609 87 HOH HOH . 
H 5 HOH A 110 610 91 HOH HOH . 
H 5 HOH A 111 611 93 HOH HOH . 
H 5 HOH A 112 612 98 HOH HOH . 
H 5 HOH A 113 613 103 HOH HOH . 
H 5 HOH A 114 614 111 HOH HOH . 
H 5 HOH A 115 615 112 HOH HOH . 
H 5 HOH A 116 616 127 HOH HOH . 
H 5 HOH A 117 617 129 HOH HOH . 
H 5 HOH A 118 618 140 HOH HOH . 
H 5 HOH A 119 619 141 HOH HOH . 
H 5 HOH A 120 620 143 HOH HOH . 
H 5 HOH A 121 621 145 HOH HOH . 
H 5 HOH A 122 622 146 HOH HOH . 
H 5 HOH A 123 623 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . G 4 7.887 -8.54 14.791 1 63.58 ? P1 POP 406 A 1 
HETATM 2 O O1 POP . . . G 4 9.113 -8.406 13.922 1 63.51 ? O1 POP 406 A 1 
HETATM 3 O O2 POP . . . G 4 6.611 -8.113 14.101 1 61.61 ? O2 POP 406 A 1 
HETATM 4 O O3 POP . . . G 4 7.813 -9.854 15.534 1 62.51 ? O3 POP 406 A 1 
HETATM 5 O O POP . . . G 4 8.112 -7.436 15.944 1 60.77 ? O POP 406 A 1 
HETATM 6 P P2 POP . . . G 4 7.107 -7.221 17.189 1 59.83 ? P2 POP 406 A 1 
HETATM 7 O O4 POP . . . G 4 5.707 -7.231 16.63 1 58.25 ? O4 POP 406 A 1 
HETATM 8 O O5 POP . . . G 4 7.497 -5.858 17.709 1 60.51 ? O5 POP 406 A 1 
HETATM 9 O O6 POP . . . G 4 7.408 -8.369 18.123 1 58.64 ? O6 POP 406 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           475 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#