data_4WN3
#
_model_server_result.job_id            BKvrkjPfQ33R73CNkEc2lA 
_model_server_result.datetime_utc      '2024-10-19 21:37:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4wn3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4WN3 
#
_exptl.entry_id    4WN3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              389.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4WN3 
_cell.length_a            62.01 
_cell.length_b            62.01 
_cell.length_c            132.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4WN3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 301 1_555 C O3B 3R3 . A 3R3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc2 B MG MG . A MG 301 1_555 C O1 3R3 . A 3R3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 B MG MG . A MG 301 1_555 C O3 3R3 . A 3R3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 C O2 3R3 . A 3R3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc5 B MG MG . A MG 301 1_555 D O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc6 B MG MG . A MG 301 1_555 D O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
#
_chem_comp.formula           'C5 H14 N O13 P3' 
_chem_comp.formula_weight    389.085 
_chem_comp.id                3R3 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '[[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P 3R3 doub 1 n n 
O2P P 3R3 sing 2 n n 
P O5 3R3 sing 3 n n 
P O1P 3R3 sing 4 n n 
O5 C5 3R3 sing 5 n n 
C5 C4 3R3 sing 6 n n 
O3 C3 3R3 sing 7 n n 
C4 C3 3R3 sing 8 n n 
C4 O4 3R3 sing 9 n n 
C3 C2 3R3 sing 10 n n 
O4 C1 3R3 sing 11 n n 
O1A PA 3R3 doub 12 n n 
C2 C1 3R3 sing 13 n n 
C2 O2 3R3 sing 14 n n 
C1 O1 3R3 sing 15 n n 
O1 PA 3R3 sing 16 n n 
PA N3A 3R3 sing 17 n n 
PA O2A 3R3 sing 18 n n 
O3B PB 3R3 doub 19 n n 
N3A PB 3R3 sing 20 n n 
PB O1B 3R3 sing 21 n n 
PB O2B 3R3 sing 22 n n 
O1B H1A 3R3 sing 23 n n 
O2B H2A 3R3 sing 24 n n 
N3A H3A 3R3 sing 25 n n 
O2A H4A 3R3 sing 26 n n 
C1 H1 3R3 sing 27 n n 
C4 H4 3R3 sing 28 n n 
C3 H3 3R3 sing 29 n n 
O3 HO3 3R3 sing 30 n n 
C2 H2 3R3 sing 31 n n 
O2 HO2 3R3 sing 32 n n 
C5 H51 3R3 sing 33 n n 
C5 H52 3R3 sing 34 n n 
O1P H13 3R3 sing 35 n n 
O2P H14 3R3 sing 36 n n 
#
_atom_sites.entry_id                     4WN3 
_atom_sites.fract_transf_matrix[1][1]    0.016126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 0 MG MG . 
C 3 3R3 A 1 302 1 3R3 P7P . 
D 4 HOH A 1 401 102 HOH HOH . 
D 4 HOH A 2 402 84 HOH HOH . 
D 4 HOH A 3 403 32 HOH HOH . 
D 4 HOH A 4 404 39 HOH HOH . 
D 4 HOH A 5 405 53 HOH HOH . 
D 4 HOH A 6 406 18 HOH HOH . 
D 4 HOH A 7 407 31 HOH HOH . 
D 4 HOH A 8 408 26 HOH HOH . 
D 4 HOH A 9 409 70 HOH HOH . 
D 4 HOH A 10 410 108 HOH HOH . 
D 4 HOH A 11 411 73 HOH HOH . 
D 4 HOH A 12 412 6 HOH HOH . 
D 4 HOH A 13 413 79 HOH HOH . 
D 4 HOH A 14 414 12 HOH HOH . 
D 4 HOH A 15 415 65 HOH HOH . 
D 4 HOH A 16 416 36 HOH HOH . 
D 4 HOH A 17 417 7 HOH HOH . 
D 4 HOH A 18 418 105 HOH HOH . 
D 4 HOH A 19 419 37 HOH HOH . 
D 4 HOH A 20 420 47 HOH HOH . 
D 4 HOH A 21 421 85 HOH HOH . 
D 4 HOH A 22 422 34 HOH HOH . 
D 4 HOH A 23 423 72 HOH HOH . 
D 4 HOH A 24 424 3 HOH HOH . 
D 4 HOH A 25 425 86 HOH HOH . 
D 4 HOH A 26 426 66 HOH HOH . 
D 4 HOH A 27 427 30 HOH HOH . 
D 4 HOH A 28 428 40 HOH HOH . 
D 4 HOH A 29 429 8 HOH HOH . 
D 4 HOH A 30 430 55 HOH HOH . 
D 4 HOH A 31 431 111 HOH HOH . 
D 4 HOH A 32 432 80 HOH HOH . 
D 4 HOH A 33 433 61 HOH HOH . 
D 4 HOH A 34 434 52 HOH HOH . 
D 4 HOH A 35 435 98 HOH HOH . 
D 4 HOH A 36 436 62 HOH HOH . 
D 4 HOH A 37 437 54 HOH HOH . 
D 4 HOH A 38 438 60 HOH HOH . 
D 4 HOH A 39 439 56 HOH HOH . 
D 4 HOH A 40 440 81 HOH HOH . 
D 4 HOH A 41 441 87 HOH HOH . 
D 4 HOH A 42 442 51 HOH HOH . 
D 4 HOH A 43 443 90 HOH HOH . 
D 4 HOH A 44 444 64 HOH HOH . 
D 4 HOH A 45 445 1 HOH HOH . 
D 4 HOH A 46 446 2 HOH HOH . 
D 4 HOH A 47 447 4 HOH HOH . 
D 4 HOH A 48 448 5 HOH HOH . 
D 4 HOH A 49 449 9 HOH HOH . 
D 4 HOH A 50 450 10 HOH HOH . 
D 4 HOH A 51 451 11 HOH HOH . 
D 4 HOH A 52 452 13 HOH HOH . 
D 4 HOH A 53 453 14 HOH HOH . 
D 4 HOH A 54 454 15 HOH HOH . 
D 4 HOH A 55 455 16 HOH HOH . 
D 4 HOH A 56 456 17 HOH HOH . 
D 4 HOH A 57 457 19 HOH HOH . 
D 4 HOH A 58 458 20 HOH HOH . 
D 4 HOH A 59 459 21 HOH HOH . 
D 4 HOH A 60 460 22 HOH HOH . 
D 4 HOH A 61 461 23 HOH HOH . 
D 4 HOH A 62 462 24 HOH HOH . 
D 4 HOH A 63 463 25 HOH HOH . 
D 4 HOH A 64 464 27 HOH HOH . 
D 4 HOH A 65 465 28 HOH HOH . 
D 4 HOH A 66 466 29 HOH HOH . 
D 4 HOH A 67 467 33 HOH HOH . 
D 4 HOH A 68 468 35 HOH HOH . 
D 4 HOH A 69 469 38 HOH HOH . 
D 4 HOH A 70 470 41 HOH HOH . 
D 4 HOH A 71 471 42 HOH HOH . 
D 4 HOH A 72 472 43 HOH HOH . 
D 4 HOH A 73 473 44 HOH HOH . 
D 4 HOH A 74 474 45 HOH HOH . 
D 4 HOH A 75 475 46 HOH HOH . 
D 4 HOH A 76 476 48 HOH HOH . 
D 4 HOH A 77 477 49 HOH HOH . 
D 4 HOH A 78 478 50 HOH HOH . 
D 4 HOH A 79 479 57 HOH HOH . 
D 4 HOH A 80 480 58 HOH HOH . 
D 4 HOH A 81 481 59 HOH HOH . 
D 4 HOH A 82 482 63 HOH HOH . 
D 4 HOH A 83 483 67 HOH HOH . 
D 4 HOH A 84 484 68 HOH HOH . 
D 4 HOH A 85 485 69 HOH HOH . 
D 4 HOH A 86 486 71 HOH HOH . 
D 4 HOH A 87 487 74 HOH HOH . 
D 4 HOH A 88 488 75 HOH HOH . 
D 4 HOH A 89 489 76 HOH HOH . 
D 4 HOH A 90 490 77 HOH HOH . 
D 4 HOH A 91 491 78 HOH HOH . 
D 4 HOH A 92 492 82 HOH HOH . 
D 4 HOH A 93 493 83 HOH HOH . 
D 4 HOH A 94 494 88 HOH HOH . 
D 4 HOH A 95 495 89 HOH HOH . 
D 4 HOH A 96 496 91 HOH HOH . 
D 4 HOH A 97 497 92 HOH HOH . 
D 4 HOH A 98 498 93 HOH HOH . 
D 4 HOH A 99 499 94 HOH HOH . 
D 4 HOH A 100 500 95 HOH HOH . 
D 4 HOH A 101 501 96 HOH HOH . 
D 4 HOH A 102 502 97 HOH HOH . 
D 4 HOH A 103 503 99 HOH HOH . 
D 4 HOH A 104 504 100 HOH HOH . 
D 4 HOH A 105 505 101 HOH HOH . 
D 4 HOH A 106 506 103 HOH HOH . 
D 4 HOH A 107 507 104 HOH HOH . 
D 4 HOH A 108 508 106 HOH HOH . 
D 4 HOH A 109 509 107 HOH HOH . 
D 4 HOH A 110 510 109 HOH HOH . 
D 4 HOH A 111 511 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3B 3R3 . . . C 3 -7.649 -19.628 -1.52 1 43.96 ? O3B 3R3 302 A 1 
HETATM 2 P PB 3R3 . . . C 3 -8.45 -20.616 -0.623 1 42.99 ? PB 3R3 302 A 1 
HETATM 3 O O1B 3R3 . . . C 3 -9.802 -20.104 -0.448 1 35.88 ? O1B 3R3 302 A 1 
HETATM 4 O O2B 3R3 . . . C 3 -7.712 -21.001 0.61 1 38.22 ? O2B 3R3 302 A 1 
HETATM 5 N N3A 3R3 . . . C 3 -8.668 -21.988 -1.494 1 50.42 ? N3A 3R3 302 A 1 
HETATM 6 P PA 3R3 . . . C 3 -7.566 -23.11 -2.076 1 62.3 ? PA 3R3 302 A 1 
HETATM 7 O O1A 3R3 . . . C 3 -8.222 -23.861 -3.238 1 56.21 ? O1A 3R3 302 A 1 
HETATM 8 O O2A 3R3 . . . C 3 -6.915 -23.884 -0.964 1 55.13 ? O2A 3R3 302 A 1 
HETATM 9 O O1 3R3 . . . C 3 -6.338 -22.233 -2.718 1 53.33 ? O1 3R3 302 A 1 
HETATM 10 C C1 3R3 . . . C 3 -4.964 -22.641 -2.794 1 51.32 ? C1 3R3 302 A 1 
HETATM 11 O O4 3R3 . . . C 3 -4.889 -23.576 -3.866 1 52.83 ? O4 3R3 302 A 1 
HETATM 12 C C4 3R3 . . . C 3 -4.668 -22.832 -5.086 1 56.81 ? C4 3R3 302 A 1 
HETATM 13 C C3 3R3 . . . C 3 -4.293 -21.387 -4.73 1 52.94 ? C3 3R3 302 A 1 
HETATM 14 O O3 3R3 . . . C 3 -5.429 -20.588 -5.181 1 46.02 ? O3 3R3 302 A 1 
HETATM 15 C C2 3R3 . . . C 3 -4.135 -21.418 -3.206 1 51.04 ? C2 3R3 302 A 1 
HETATM 16 O O2 3R3 . . . C 3 -4.688 -20.247 -2.583 1 44.67 ? O2 3R3 302 A 1 
HETATM 17 C C5 3R3 . . . C 3 -3.703 -23.537 -5.994 1 56.22 ? C5 3R3 302 A 1 
HETATM 18 O O5 3R3 . . . C 3 -4.543 -24.523 -6.637 1 59.27 ? O5 3R3 302 A 1 
HETATM 19 P P 3R3 . . . C 3 -3.765 -25.759 -7.279 1 53.53 ? P 3R3 302 A 1 
HETATM 20 O O1P 3R3 . . . C 3 -2.984 -26.403 -6.13 1 63.37 ? O1P 3R3 302 A 1 
HETATM 21 O O2P 3R3 . . . C 3 -4.714 -26.8 -7.832 1 66.77 ? O2P 3R3 302 A 1 
HETATM 22 O O3P 3R3 . . . C 3 -2.818 -25.014 -8.261 1 53.86 ? O3P 3R3 302 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#